Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G023400 Prunus persica HOM05D005569 ORTHO05D007052 1.0e-88 330.1 172 100.0
MD17G1161700 Malus domestica HOM05D005569 ORTHO05D007052 3.2e-82 308.5 171 91.2
MD09G1166000 Malus domestica HOM05D005569 ORTHO05D007052 4.6e-81 304.7 170 90.0
RcHm_v2.0_Chr2g0149331 Rosa chinensis HOM05D005569 ORTHO05D007052 4.7e-78 294.7 171 89.5
FvH4_6g36900 Fragaria vesca HOM05D005569 ORTHO05D007052 9.8e-76 287.0 173 87.9
FAN14G0087 Fragaria x ananassa HOM05D000810 ORTHO05D003737 9.8e-76 287.0 173 87.9
FAN09G0120 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.9e-75 284.6 173 87.3
FAN05G2575 Fragaria x ananassa HOM05D005569 ORTHO05D007052 4.7e-70 268.1 202 74.8
GSVIVG01029554001 Vitis vinifera HOM05D005569 ORTHO05D007052 5.2e-69 264.6 160 82.5
TAR626G0082 Trochodendron aralioides HOM05D005569 ORTHO05D007052 1.3e-67 260.0 172 79.7
arahy.Tifrunner.gnm1.ann1.DT0EHL Arachis hypogaea HOM05D005569 ORTHO05D007052 4.9e-67 258.1 166 80.7
Ciclev10032913m.g Citrus clementina HOM05D005569 ORTHO05D007052 1.4e-66 256.5 162 83.3
arahy.Tifrunner.gnm1.ann1.0XD544 Arachis hypogaea HOM05D005569 ORTHO05D007052 4.1e-66 255.0 166 80.1
Manes.06G179601 Manihot esculenta HOM05D005569 ORTHO05D007052 4.1e-66 255.0 155 83.2
Potri.008G004200 Populus trichocarpa HOM05D005569 ORTHO05D007052 5.4e-66 254.6 156 83.3
ClCG09G020780 Citrullus lanatus HOM05D005569 ORTHO05D007052 7.1e-66 254.2 156 81.4
Gohir.A05G114900 Gossypium hirsutum HOM05D005569 ORTHO05D007052 9.2e-66 253.8 161 80.7
Gohir.D05G115300 Gossypium hirsutum HOM05D005569 ORTHO05D007052 1.6e-65 253.1 161 80.7
Gorai.009G119400 Gossypium raimondii HOM05D005569 ORTHO05D007052 1.6e-65 253.1 161 80.7
Sed0017383 Sechium edule HOM05D005569 ORTHO05D007052 2.1e-65 252.7 166 77.1
Thecc.06G056000 Theobroma cacao HOM05D005569 ORTHO05D007052 3.5e-65 251.9 164 78.7
MELO3C002923.2 Cucumis melo HOM05D005569 ORTHO05D007052 1.3e-64 250.0 156 80.1
Cpa.g.sc176.7 Carica papaya HOM05D005569 ORTHO05D007052 1.7e-64 249.6 159 81.8
CsaV3_5G025600 Cucumis sativus L. HOM05D005569 ORTHO05D007052 2.3e-64 249.2 156 79.5
COL.COLO4_31145 Corchorus olitorius HOM05D000810 ORTHO05D003737 3.9e-64 248.4 165 77.6
Medtr4g005340 Medicago truncatula HOM05D005569 ORTHO05D007052 5.1e-64 248.1 168 76.2
Eucgr.J00350 Eucalyptus grandis HOM05D005569 ORTHO05D007052 1.1e-63 246.9 162 79.0
Hma1.2p1_1111F.1_g258450 Hydrangea macrophylla HOM05D005569 ORTHO05D007052 7.3e-63 244.2 169 79.3
CiPaw.02G129100 Carya illinoinensis HOM05D005569 ORTHO05D007052 2.1e-62 242.7 160 79.4
Nn8g41003 Nelumbo nucifera HOM05D005569 ORTHO05D007052 2.8e-62 242.3 169 75.1
Psat7g265160 Pisum sativum HOM05D005569 ORTHO05D007052 3.6e-62 241.9 167 75.4
Aqoxy7G02714 Aquilegia oxysepala HOM05D005569 ORTHO05D007052 4.7e-62 241.5 162 76.5
Ca_20982_v3 Cicer arietinum L. HOM05D005569 ORTHO05D007052 4.7e-62 241.5 167 74.3
TWI75G0478 Tripterygium wilfordii HOM05D005569 ORTHO05D007052 1.1e-61 240.4 152 82.9
PSO170G0292 Papaver somniferum HOM05D005569 ORTHO05D007052 1.4e-61 240.0 169 72.8
Lj6P639T26 Lonicera japonica HOM05D005569 ORTHO05D007052 1.8e-61 239.6 143 86.0
QL05p088862 Quercus lobata HOM05D005569 ORTHO05D007052 1.8e-61 239.6 159 80.5
TPR.G38774 Trifolium pratense HOM05D005569 ORTHO05D007052 2.4e-61 239.2 166 75.9
PSO063G3520 Papaver somniferum HOM05D005569 ORTHO05D007052 4.0e-61 238.4 169 72.2
FAN02G3798 Fragaria x ananassa HOM05D005569 ORTHO05D007052 6.9e-61 237.7 145 86.9
Lj3g0021821 Lotus japonicus HOM05D005569 ORTHO05D007052 1.2e-60 236.9 153 78.4
Actinidia00647 Actinidia chinensis HOM05D005569 ORTHO05D007052 1.3e-59 233.4 148 85.1
Lsat_1_v5_gn_5_137201 Lactuca sativa HOM05D005569 ORTHO05D007052 2.2e-59 232.6 156 76.3
CSS0046788 Camellia sinensis var. sinensis HOM05D005569 ORTHO05D007052 2.9e-59 232.3 164 76.2
Nitab4.5_0001708g0020 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.9e-59 231.5 156 78.8
VMungo0331G1663 Vigna mungo HOM05D005569 ORTHO05D007052 4.9e-59 231.5 164 72.6
HanXRQChr10g0311221 Helianthus annuus HOM05D005569 ORTHO05D007052 6.4e-59 231.1 160 75.6
THA.LOC104808103 Tarenaya hassleriana HOM05D005569 ORTHO05D007052 6.4e-59 231.1 159 76.7
CiPaw.01G208600 Carya illinoinensis HOM05D005569 ORTHO05D007052 8.4e-59 230.7 148 81.1
Nitab4.5_0007226g0010 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.1e-58 230.3 156 78.8
HanXRQChr12g0359721 Helianthus annuus HOM05D005569 ORTHO05D007052 2.4e-58 229.2 152 76.3
Sc15g0001130 Simmondsia chinensis HOM05D005569 ORTHO05D007052 3.2e-58 228.8 153 77.8
Nitab4.5_0002354g0080 Nicotiana tabacum HOM05D005569 ORTHO05D007052 4.2e-58 228.4 147 78.9
CAN.G1445.2 Capsicum annuum HOM05D005569 ORTHO05D007052 7.1e-58 227.6 141 83.0
vmacro12582 Vaccinium macrocarpon HOM05D005569 ORTHO05D007052 7.1e-58 227.6 148 81.1
CDE04G0659 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 9.3e-58 227.3 156 71.8
Sopen08g026060 Solanum pennellii HOM05D005569 ORTHO05D007052 9.3e-58 227.3 159 76.1
CDE07G0675 Ceratophyllum demersum HOM05D005569 ORTHO05D007052 1.6e-57 226.5 156 73.1
PGSC0003DMG400001840 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.6e-57 226.5 156 76.3
Sp5g33910 Schrenkiella parvula HOM05D005569 ORTHO05D007052 2.1e-57 226.1 160 72.5
AL2G39310 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 3.5e-57 225.3 165 72.1
AT1G78895 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 4.6e-57 224.9 165 72.1
ECA234G1813 Erigeron canadensis HOM05D005569 ORTHO05D007052 1.3e-56 223.4 149 76.5
Solyc08g077470.4 Solanum lycopersicum HOM05D005569 ORTHO05D007052 1.3e-56 223.4 141 80.9
Thhalv10019242m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 3.0e-56 222.2 165 70.9
Glyma.07G001900 Glycine max HOM05D005569 ORTHO05D007052 3.0e-56 222.2 158 73.4
PGR031G1139 Punica granatum HOM05D005569 ORTHO05D007052 3.9e-56 221.9 193 64.2
HPP92_023863 Vanilla planifolia HOM05D005569 ORTHO05D007052 6.6e-56 221.1 163 69.9
PGSC0003DMG400026509 Solanum tuberosum HOM05D005569 ORTHO05D007052 1.9e-55 219.5 141 78.0
Sp1g14960 Schrenkiella parvula HOM05D005569 ORTHO05D007052 3.3e-55 218.8 153 74.5
Aa31LG4G2110 Aethionema arabicum HOM05D005569 ORTHO05D007052 4.3e-55 218.4 165 72.1
Hund05672 Selenicereus undatus HOM05D005569 ORTHO05D007052 4.3e-55 218.4 159 72.3
BcaB02g07184 Brassica carinata HOM05D005569 ORTHO05D007052 5.6e-55 218.0 164 69.5
Sopen06g022820 Solanum pennellii HOM05D005569 ORTHO05D007052 1.3e-54 216.9 147 74.1
BcaC07g41383 Brassica carinata HOM05D005569 ORTHO05D007052 1.6e-54 216.5 153 73.9
CARHR072480 Cardamine hirsuta HOM05D005569 ORTHO05D007052 2.1e-54 216.1 165 69.1
AUR62025672 Chenopodium quinoa HOM05D005569 ORTHO05D007052 2.8e-54 215.7 155 71.0
BraA07t30385Z Brassica rapa HOM05D005569 ORTHO05D007052 4.8e-54 214.9 166 69.9
Carub.0002s2572 Capsella rubella HOM05D005569 ORTHO05D007052 8.1e-54 214.2 167 70.1
CAN.G308.17 Capsicum annuum HOM05D005569 ORTHO05D007052 1.1e-53 213.8 147 72.1
A07p27440 Brassica napus HOM05D005569 ORTHO05D007052 1.4e-53 213.4 166 69.9
BcaC08g45404 Brassica carinata HOM05D005569 ORTHO05D007052 9.0e-53 210.7 166 68.7
C06p30360 Brassica napus HOM05D005569 ORTHO05D007052 9.0e-53 210.7 166 68.7
Carub.0001s1656 Capsella rubella HOM05D005569 ORTHO05D007052 9.0e-53 210.7 138 77.5
BcaC07g41456 Brassica carinata HOM05D005569 ORTHO05D007052 2.0e-52 209.5 158 70.9
BolC6t38199H Brassica oleracea HOM05D005569 ORTHO05D007052 2.0e-52 209.5 166 68.7
BolC8t51973H Brassica oleracea HOM05D005569 ORTHO05D007052 2.0e-52 209.5 158 70.9
Lalb_Chr01g0011651 Lupinus albus HOM05D005569 ORTHO05D007052 2.0e-52 209.5 165 69.7
Actinidia31124 Actinidia chinensis HOM05D005569 ORTHO05D007052 7.6e-52 207.6 131 84.7
BraA09t41445Z Brassica rapa HOM05D005569 ORTHO05D007052 7.6e-52 207.6 158 70.3
CARHR017290 Cardamine hirsuta HOM05D005569 ORTHO05D007052 9.9e-52 207.2 153 69.9
Migut.D00888 Erythranthe guttata HOM05D005569 ORTHO05D007052 9.9e-52 207.2 140 74.3
MSTRG.9559 Avicennia marina HOM05D005569 ORTHO05D007052 1.7e-51 206.5 148 70.9
AT1G16825 Arabidopsis thaliana HOM05D005569 ORTHO05D007052 2.9e-51 205.7 138 76.1
SGA_v2.0_scaffold4G02105 Striga asiatica HOM05D005569 ORTHO05D007052 3.8e-51 205.3 146 71.9
AL1G28990 Arabidopsis lyrata HOM05D005569 ORTHO05D007052 6.4e-51 204.5 137 75.9
Oeu049628.2 Olea europaea HOM05D005569 ORTHO05D007052 2.7e-49 199.1 124 80.6
MSTRG.4523 Avicennia marina HOM05D005569 ORTHO05D007052 1.8e-48 196.4 144 72.9
Nitab4.5_0003757g0060 Nicotiana tabacum HOM05D005569 ORTHO05D007052 1.8e-48 196.4 158 67.7
Zm00001eb414080 Zea mays HOM05D005569 ORTHO05D007052 6.7e-48 194.5 136 72.8
SEGI_33936 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 5.6e-47 191.4 152 63.8
Hund18590 Selenicereus undatus HOM05D005569 ORTHO05D007052 9.6e-47 190.7 153 63.4
Phvul.010G164400 Phaseolus vulgaris HOM05D005569 ORTHO05D007052 8.1e-46 187.6 163 61.3
SalBow4G0561 Salvia bowleyana HOM05D005569 ORTHO05D007052 8.1e-46 187.6 167 60.5
EL10Ac7g18137 Beta vulgaris HOM05D005569 ORTHO05D007052 1.1e-45 187.2 127 74.0
Peaxi162Scf00084g00024 Petunia axillaris HOM05D005569 ORTHO05D007052 6.9e-45 184.5 129 76.7
C08p44280 Brassica napus HOM05D005569 ORTHO05D007052 1.5e-44 183.3 128 75.0
Haze_16187 Corylus avellana HOM05D005569 ORTHO05D007052 2.6e-44 182.6 103 89.3
A09p60680 Brassica napus HOM05D005569 ORTHO05D007052 5.8e-44 181.4 128 74.2
MBI16_g18210_MAGBIO Magnolia biondii HOM05D005569 ORTHO05D007052 6.4e-43 177.9 107 84.1
CANSAT01G2461 Cannabis sativa HOM05D005569 ORTHO05D007052 1.4e-42 176.8 150 64.7
DCAR_028944 Daucus carota HOM05D005569 ORTHO05D007052 6.7e-40 167.9 103 83.5
Sabra08G0001800 Salix brachista HOM05D005569 ORTHO05D007052 1.5e-39 166.8 103 84.5
SEGI_27689 Sequoiadendron giganteum HOM05D005569 ORTHO05D007052 9.6e-39 164.1 120 67.5
Os08g0225100 Oryza sativa ssp. japonica HOM05D005569 ORTHO05D007052 2.1e-38 162.9 105 80.0
AUR62001332 Chenopodium quinoa HOM05D005569 ORTHO05D007052 3.7e-38 162.2 108 79.6
Thhalv10009539m.g Eutrema salsugineum HOM05D005569 ORTHO05D007052 3.4e-36 155.6 101 78.2
Cc04_g00060 Coffea canephora HOM05D005569 ORTHO05D007052 3.8e-35 152.1 101 79.2
SMO215G0002 Selaginella moellendorffii HOM05D005569 ORTHO05D007052 8.4e-35 151.0 118 66.1
Pp3c8_16360 Physcomitrium patens HOM05D005569 ORTHO05D007052 1.9e-34 149.8 141 58.2
ATR0626G016 Amborella trichopoda HOM05D005569 ORTHO05D007052 4.2e-34 148.7 100 72.0
Prupe.3G058300 Prunus persica HOM05D005569 ORTHO05D007052 4.6e-33 145.2 96 83.3
Duzib192G1047 Durio zibethinus HOM05D005569 ORTHO05D007052 7.9e-33 144.4 84 85.7
Mapoly0045s0143 Marchantia polymorpha HOM05D005569 ORTHO05D007052 2.3e-32 142.9 147 48.3
Atru.chr1.2818 Acer truncatum HOM05D005569 ORTHO05D007052 6.3e-30 134.8 82 84.1
Pp3c24_12140 Physcomitrium patens HOM05D005569 ORTHO05D007052 2.4e-21 106.3 107 56.1
BcaC07g41384 Brassica carinata HOM05D005569 ORTHO05D007052 2.6e-20 102.8 111 53.2
CBR_g40779 Chara braunii HOM05D005569 ORTHO05D007052 1.0e-19 100.9 128 47.7
CBR_g49429 Chara braunii HOM05D005569 ORTHO05D007052 6.5e-19 98.2 130 42.3
Duzib235G0081 Durio zibethinus HOM05D005569 ORTHO05D007052 2.5e-18 96.3 60 81.7
CBR_g41646 Chara braunii HOM05D000785 ORTHO05D000231 7.9e-17 91.3 125 40.0
HPP92_023858 Vanilla planifolia HOM05D005569 ORTHO05D007052 1.0e-16 90.9 58 74.1
unitig_899.g14763 Utricularia gibba HOM05D000070 ORTHO05D003301 1.5e-12 77.0 53 69.8
Prupe.5G038700 Prunus persica HOM05D005569 ORTHO05D007052 2.2e-11 73.2 46 80.4
SEGI_34083 Sequoiadendron giganteum HOM05D000074 ORTHO05D000220 9.4e-10 67.8 47 70.2
C08p44240 Brassica napus HOM05D005569 ORTHO05D007052 2.7e-09 66.2 48 68.8
BolC8t51970H Brassica oleracea HOM05D005569 ORTHO05D007052 2.7e-09 66.2 48 68.8
C08p44260 Brassica napus HOM05D005569 ORTHO05D007052 2.2e-06 56.6 39 79.5
Glyma.08G224900 Glycine max HOM05D005569 ORTHO05D007052 2.8e-06 56.2 30 80.0
CsaV3_3G034220 Cucumis sativus L. HOM05D000289 ORTHO05D000208 6.3e-06 55.1 123 30.9


User provided reference genes

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