Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 5.6e-228 794.7 664 100.0
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 3.4e-140 503.1 640 81.4
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 6.2e-110 402.5 669 69.7
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 1.1e-103 381.7 662 53.9
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 3.4e-100 370.2 229 77.3
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 4.8e-94 349.7 663 62.9
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 4.8e-94 349.7 624 68.6
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 4.0e-93 346.7 649 65.2
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 2.0e-92 344.4 625 53.6
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 1.7e-91 341.3 635 57.3
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 1.1e-90 338.6 640 59.8
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 1.4e-90 338.2 446 76.2
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 6.0e-89 332.8 446 76.5
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 1.3e-86 325.1 662 60.9
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 9.0e-85 318.9 660 64.5
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 7.6e-84 315.8 667 60.9
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 2.5e-79 300.8 635 62.2
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 5.7e-79 299.7 662 59.8
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 1.3e-78 298.5 439 65.1
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 3.7e-78 297.0 628 63.7
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 2.2e-75 287.7 611 67.3
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 7.2e-74 282.7 662 51.4
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 9.4e-74 282.3 601 57.1
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 1.2e-73 282.0 441 63.0
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 1.6e-73 281.6 441 58.5
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 1.6e-73 281.6 365 82.5
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 1.6e-73 281.6 613 61.5
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 2.1e-73 281.2 611 66.8
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 2.7e-73 280.8 613 56.0
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 3.6e-73 280.4 667 61.3
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 6.1e-73 279.6 441 62.4
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.3e-72 277.7 607 61.8
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 3.3e-71 273.9 637 59.7
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 2.0e-68 264.6 434 66.8
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 3.8e-67 260.4 390 66.9
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 2.5e-66 257.7 449 62.8
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.5e-66 257.7 566 62.9
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 4.7e-65 253.4 390 66.7
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 1.4e-64 251.9 392 64.0
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 1.4e-64 251.9 573 56.2
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 8.8e-64 249.2 443 66.4
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 7.4e-63 246.1 419 65.2
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 8.2e-62 242.7 419 64.2
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 3.1e-61 240.7 397 60.5
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 1.0e-59 235.7 435 60.5
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 4.7e-57 226.9 674 46.6
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.3e-54 218.8 492 60.8
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 1.3e-54 218.8 564 62.6
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 3.7e-54 217.2 628 56.5
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.1e-53 215.7 492 62.8
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 1.0e-51 209.1 429 63.2
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 1.0e-51 209.1 292 74.3
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 3.8e-51 207.2 424 64.9
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 5.0e-51 206.8 612 51.8
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 4.2e-50 203.8 651 48.2
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 5.5e-50 203.4 565 46.2
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 1.8e-48 198.4 596 53.0
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 3.0e-48 197.6 165 52.7
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 4.0e-48 197.2 496 63.3
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 5.4e-45 186.8 197 48.7
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 1.3e-43 182.2 344 69.2
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 8.5e-43 179.5 559 54.0
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 2.0e-39 168.3 201 40.3
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 3.7e-38 164.1 211 41.2
MD17G1163000 Malus domestica HOM05D007552 ORTHO05D009397 7.0e-37 159.8 114 76.3
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 2.0e-36 158.3 547 48.1
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 1.0e-35 156.0 391 61.1
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 1.7e-35 155.2 193 40.4
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 1.9e-34 151.8 171 40.4
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 2.1e-33 148.3 520 27.9
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 2.3e-32 144.8 617 45.1
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 5.2e-32 143.7 111 59.5
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 8.9e-32 142.9 535 48.4
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 5.7e-31 140.2 170 40.6
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 2.2e-30 138.3 171 37.4
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 3.7e-30 137.5 228 33.8
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 7.3e-26 123.2 176 36.9
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 7.3e-26 123.2 176 36.9
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 9.5e-26 122.9 177 36.2
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 9.5e-26 122.9 602 32.7
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 1.8e-24 118.6 173 36.4
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 1.8e-24 118.6 173 36.4
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 2.3e-24 118.2 245 31.0
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 4.0e-24 117.5 171 33.9
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 7.5e-23 113.2 226 33.2
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 4.9e-22 110.5 83 63.9
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.4e-21 109.0 293 29.4
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 5.4e-21 107.1 507 44.4
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 1.6e-20 105.5 581 36.3
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 5.6e-18 97.1 73 65.8
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 4.9e-14 84.0 65 55.4
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 1.6e-09 68.9 158 27.8
Carub.0005s1609 Capsella rubella HOM05D000424 ORTHO05D000355 2.1e-09 68.6 158 28.5
CARHR158820 Cardamine hirsuta HOM05D000424 ORTHO05D000355 2.8e-09 68.2 158 27.2
AL5G29690 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 8.1e-09 66.6 158 25.9
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.4e-08 65.9 158 27.2
Solyc01g007267.1 Solanum lycopersicum HOM05D000424 ORTHO05D000355 1.8e-08 65.5 156 26.3
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 2.4e-08 65.1 158 26.6
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 2.4e-08 65.1 158 26.6
CiPaw.08G090200 Carya illinoinensis HOM05D000424 ORTHO05D002854 2.4e-08 65.1 156 25.6
MD12G1138900 Malus domestica HOM05D006895 ORTHO05D008605 2.4e-08 65.1 116 30.2
SEGI_35089 Sequoiadendron giganteum HOM05D007552 ORTHO05D009397 4.0e-08 64.3 94 30.9
TAR365G0924 Trochodendron aralioides HOM05D000424 ORTHO05D002854 5.2e-08 63.9 198 23.7
Thhalv10010190m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 6.8e-08 63.5 158 25.9
SEGI_31641 Sequoiadendron giganteum HOM05D000424 ORTHO05D002854 6.8e-08 63.5 156 25.6
ATR0680G314 Amborella trichopoda HOM05D000424 ORTHO05D002854 8.9e-08 63.2 153 26.1
Nn2g14733 Nelumbo nucifera HOM05D000424 ORTHO05D000355 8.9e-08 63.2 158 24.7
Migut.L00219 Erythranthe guttata HOM05D000424 ORTHO05D000355 1.2e-07 62.8 155 25.2
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 1.2e-07 62.8 89 30.3
Haze_20748 Corylus avellana HOM05D006895 ORTHO05D008605 1.5e-07 62.4 146 30.8
Nitab4.5_0002247g0010 Nicotiana tabacum HOM05D000424 ORTHO05D002854 1.5e-07 62.4 150 25.3
Thecc.09G185200 Theobroma cacao HOM05D000424 ORTHO05D002854 1.5e-07 62.4 153 24.8
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 2.0e-07 62.0 148 25.0
Glyma.13G227000 Glycine max HOM05D000424 ORTHO05D002854 2.0e-07 62.0 153 24.8
MBI19_g17402_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D002854 2.0e-07 62.0 198 22.7
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.6e-07 61.6 51 52.9
CAN.G134.73 Capsicum annuum HOM05D000424 ORTHO05D002854 3.4e-07 61.2 150 24.7
Ciclev10031257m.g Citrus clementina HOM05D000424 ORTHO05D008586 3.4e-07 61.2 156 25.0
Gohir.D04G119700 Gossypium hirsutum HOM05D006895 ORTHO05D008605 3.4e-07 61.2 145 24.8
Gorai.012G101800 Gossypium raimondii HOM05D006895 ORTHO05D008605 3.4e-07 61.2 145 24.8
Sopen01g003270 Solanum pennellii HOM05D000424 ORTHO05D000355 3.4e-07 61.2 156 25.6
PGSC0003DMG400027516 Solanum tuberosum HOM05D000424 ORTHO05D002854 4.4e-07 60.8 150 24.0
AT5G65820 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 5.8e-07 60.5 158 24.1
Cfa017422 Carpinus fangiana HOM05D006895 ORTHO05D008605 5.8e-07 60.5 143 30.1
Eucgr.K03543 Eucalyptus grandis HOM05D000424 ORTHO05D002854 5.8e-07 60.5 149 24.2
Thhalv10005842m.g Eutrema salsugineum HOM05D000424 ORTHO05D002854 5.8e-07 60.5 153 23.5
PGSC0003DMG400034554 Solanum tuberosum HOM05D000424 ORTHO05D000355 5.8e-07 60.5 156 25.6
arahy.Tifrunner.gnm1.ann1.I4YG6Q Arachis hypogaea HOM05D000424 ORTHO05D000355 7.6e-07 60.1 170 24.1
CDE02G4775 Ceratophyllum demersum HOM05D000424 ORTHO05D002854 7.6e-07 60.1 150 23.3
Manes.12G118100 Manihot esculenta HOM05D000424 ORTHO05D000355 7.6e-07 60.1 156 25.0
Hma1.2p1_1041F.1_g251090 Hydrangea macrophylla HOM05D006503 ORTHO05D008116 1.3e-06 59.3 188 25.0
Lj6g0020430 Lotus japonicus HOM05D000424 ORTHO05D000355 1.3e-06 59.3 158 25.3
Prupe.6G215900 Prunus persica HOM05D000424 ORTHO05D000355 1.3e-06 59.3 158 25.3
SEGI_36564 Sequoiadendron giganteum HOM05D000424 ORTHO05D002854 1.3e-06 59.3 175 21.7
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 1.3e-06 59.3 153 23.5
CAN.G574.31 Capsicum annuum HOM05D000424 ORTHO05D000355 1.7e-06 58.9 167 25.1
Ciclev10019225m.g Citrus clementina HOM05D000424 ORTHO05D002854 1.7e-06 58.9 156 23.7
Haze_05033 Corylus avellana HOM05D000424 ORTHO05D002854 1.7e-06 58.9 153 24.2
Sp2g28910 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.7e-06 58.9 156 24.4
CiPaw.10G143400 Carya illinoinensis HOM05D006895 ORTHO05D008605 2.2e-06 58.5 119 28.6
COL.COLO4_09255 Corchorus olitorius HOM05D000424 ORTHO05D002854 2.2e-06 58.5 156 23.7
TWI36G1650 Tripterygium wilfordii HOM05D000424 ORTHO05D002854 2.2e-06 58.5 153 25.5
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 2.9e-06 58.2 156 23.7
AL8G43540 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 2.9e-06 58.2 158 23.4
Hma1.2p1_0212F.1_g089980 Hydrangea macrophylla HOM05D000424 ORTHO05D002854 2.9e-06 58.2 153 23.5
Sc05g0000430 Simmondsia chinensis HOM05D000424 ORTHO05D002854 2.9e-06 58.2 153 24.2
Aqoxy2G03436 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 3.8e-06 57.8 156 25.6
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 3.8e-06 57.8 141 28.4
MELO3C004182.2 Cucumis melo HOM05D000424 ORTHO05D002854 4.9e-06 57.4 154 24.0
Phvul.006G173400 Phaseolus vulgaris HOM05D000424 ORTHO05D002854 4.9e-06 57.4 153 21.6
Prupe.6G250800 Prunus persica HOM05D006895 ORTHO05D008605 4.9e-06 57.4 116 25.9
Sp5g00960 Schrenkiella parvula HOM05D000424 ORTHO05D002854 4.9e-06 57.4 139 23.7
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 6.4e-06 57.0 150 26.7
Lj2P994T16 Lonicera japonica HOM05D000424 ORTHO05D002854 6.4e-06 57.0 156 23.7
BcaC07g39437 Brassica carinata HOM05D000424 ORTHO05D000355 8.4e-06 56.6 158 25.3
CiPaw.07G116900 Carya illinoinensis HOM05D000424 ORTHO05D002854 8.4e-06 56.6 156 23.1


User provided reference genes

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