Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G021100 Prunus persica HOM05D019125 ORTHO05D022577 1.0e-86 323.6 185 100.0
PGSC0003DMG400026512 Solanum tuberosum HOM05D009551 ORTHO05D008048 9.4e-16 87.8 147 40.8
Sopen06g022770 Solanum pennellii HOM05D009551 ORTHO05D008048 4.0e-14 82.4 148 38.5
Nitab4.5_0003757g0050 Nicotiana tabacum HOM05D006700 ORTHO05D008196 1.2e-13 80.9 131 41.2
Nitab4.5_0002354g0030 Nicotiana tabacum HOM05D006700 ORTHO05D008196 1.5e-13 80.5 128 42.2
Lj3g0024474 Lotus japonicus HOM05D014935 ORTHO05D008048 2.6e-13 79.7 121 43.0
Manes.14G007700 Manihot esculenta HOM05D009551 ORTHO05D008048 3.4e-13 79.3 102 48.0
Solyc06g063300.4 Solanum lycopersicum HOM05D006700 ORTHO05D008196 4.4e-13 79.0 150 38.7
Potri.010G252700 Populus trichocarpa HOM05D009551 ORTHO05D008048 2.2e-12 76.6 149 39.6
FAN02G0436 Fragaria x ananassa HOM05D019125 ORTHO05D022577 1.1e-11 74.3 92 45.7
TWI12G0637 Tripterygium wilfordii HOM05D009551 ORTHO05D008048 1.1e-11 74.3 147 37.4
Atru.chr1.2734 Acer truncatum HOM05D009551 ORTHO05D008048 1.8e-11 73.6 93 48.4
FAN09G2347 Fragaria x ananassa HOM05D019125 ORTHO05D022577 3.1e-11 72.8 90 46.7
FAN05G1857 Fragaria x ananassa HOM05D019125 ORTHO05D022577 1.6e-10 70.5 92 44.6
QL06p031965 Quercus lobata HOM05D008407 ORTHO05D008048 2.0e-10 70.1 127 41.7
FAN14G3334 Fragaria x ananassa HOM05D019125 ORTHO05D022577 2.7e-10 69.7 90 44.4
FvH4_6g37070 Fragaria vesca HOM05D019125 ORTHO05D022577 4.5e-10 68.9 90 44.4
Medtr4g005500 Medicago truncatula HOM05D014935 ORTHO05D008048 5.9e-10 68.6 134 37.3
BcaC05g25541 Brassica carinata HOM05D009551 ORTHO05D008048 7.7e-10 68.2 99 40.4
C05p15070 Brassica napus HOM05D009551 ORTHO05D008048 7.7e-10 68.2 99 40.4
BolC5t30222H Brassica oleracea HOM05D009551 ORTHO05D008048 7.7e-10 68.2 99 40.4
A06p12760 Brassica napus HOM05D009551 ORTHO05D008048 1.0e-09 67.8 101 40.6
BraA06t24436Z Brassica rapa HOM05D009551 ORTHO05D008048 1.0e-09 67.8 101 40.6
BcaC07g41453 Brassica carinata HOM05D009551 ORTHO05D008048 1.7e-09 67.0 101 40.6
Lj4g0011503 Lotus japonicus HOM05D008407 ORTHO05D008048 2.3e-09 66.6 151 37.7
TPR.G38723 Trifolium pratense HOM05D014935 ORTHO05D008048 2.9e-09 66.2 127 38.6
TWI79G0560 Tripterygium wilfordii HOM05D008407 ORTHO05D008048 2.9e-09 66.2 96 43.8
BcaB02g06671 Brassica carinata HOM05D009551 ORTHO05D008048 5.0e-09 65.5 101 38.6
Medtr4g094508 Medicago truncatula HOM05D014935 ORTHO05D008048 5.0e-09 65.5 140 36.4
PGSC0003DMG400031207 Solanum tuberosum HOM05D017188 ORTHO05D008048 5.0e-09 65.5 135 37.8
QL05p083981 Quercus lobata HOM05D009551 ORTHO05D008048 1.1e-08 64.3 70 57.1
C08p44220 Brassica napus HOM05D009551 ORTHO05D008048 1.5e-08 63.9 101 39.6
BolC8t51968H Brassica oleracea HOM05D009551 ORTHO05D008048 1.5e-08 63.9 101 39.6
TPR.G2192 Trifolium pratense HOM05D008407 ORTHO05D008048 1.5e-08 63.9 141 38.3
Hma1.2p1_0375F.1_g138780 Hydrangea macrophylla HOM05D008407 ORTHO05D008048 4.2e-08 62.4 99 40.4
A09p60720 Brassica napus HOM05D009551 ORTHO05D008048 5.5e-08 62.0 100 39.0
Dinv19478 Davidia involucrata HOM05D008407 ORTHO05D008048 7.2e-08 61.6 126 36.5
Thhalv10008985m.g Eutrema salsugineum HOM05D009551 ORTHO05D008048 7.2e-08 61.6 100 38.0
Carub.0001s1659 Capsella rubella HOM05D009551 ORTHO05D008048 9.5e-08 61.2 103 38.8
CARHR017320 Cardamine hirsuta HOM05D009551 ORTHO05D008048 1.6e-07 60.5 102 39.2
Gohir.A02G135700 Gossypium hirsutum HOM05D008407 ORTHO05D008048 2.8e-07 59.7 114 39.5
PGR102G1446 Punica granatum HOM05D008407 ORTHO05D008048 6.1e-07 58.5 100 45.0
Psat7g264320 Pisum sativum HOM05D014935 ORTHO05D008048 1.0e-06 57.8 121 33.9
AT1G16850 Arabidopsis thaliana HOM05D009551 ORTHO05D008048 1.4e-06 57.4 95 36.8
Lsat_1_v5_gn_4_89161 Lactuca sativa HOM05D014935 ORTHO05D008048 1.4e-06 57.4 75 44.0
CiPaw.03G133800 Carya illinoinensis HOM05D008407 ORTHO05D008048 3.0e-06 56.2 100 40.0
Psat7g050960 Pisum sativum HOM05D008407 ORTHO05D008048 3.0e-06 56.2 131 35.9
Glyma.08G142200 Glycine max HOM05D008407 ORTHO05D008048 5.2e-06 55.5 72 50.0
FAN23G0665 Fragaria x ananassa HOM05D008407 ORTHO05D008048 8.8e-06 54.7 96 37.5


User provided reference genes

Program Settings