Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G018200 Prunus persica HOM05D007551 ORTHO05D009424 5.9e-158 562.4 284 100.0
MD06G1022200 Malus domestica HOM05D007551 ORTHO05D009424 1.4e-119 434.9 285 80.7
FvH4_5g24430 Fragaria vesca HOM05D007551 ORTHO05D009424 9.5e-108 395.6 282 73.0
FAN13G0867 Fragaria x ananassa HOM05D007551 ORTHO05D009424 7.1e-103 379.4 285 70.2
RcHm_v2.0_Chr7g0214821 Rosa chinensis HOM05D007551 ORTHO05D009424 7.6e-97 359.4 256 71.9
CiPaw.12G053700 Carya illinoinensis HOM05D007551 ORTHO05D009424 8.4e-96 355.9 281 67.3
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 3.5e-94 350.5 287 65.2
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 2.3e-93 347.8 289 66.8
Ciclev10000274m.g Citrus clementina HOM05D007551 ORTHO05D009424 6.6e-93 346.3 282 66.0
Dinv37453 Davidia involucrata HOM05D007551 ORTHO05D009424 3.6e-91 340.5 282 64.9
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 2.1e-86 324.7 288 60.1
Atru.chr6.2125 Acer truncatum HOM05D007551 ORTHO05D009424 5.6e-84 316.6 231 67.5
GSVIVG01036918001 Vitis vinifera HOM05D007551 ORTHO05D009424 1.6e-83 315.1 278 62.6
RcHm_v2.0_Chr7g0219861 Rosa chinensis HOM05D007551 ORTHO05D009424 4.5e-81 307.0 281 62.3
FvH4_4g10440 Fragaria vesca HOM05D007551 ORTHO05D009424 3.2e-79 300.8 285 60.4
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 5.5e-79 300.1 282 58.2
FvH4_4g10410 Fragaria vesca HOM05D007551 ORTHO05D009424 1.2e-78 298.9 285 60.0
TWI60G1073 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 1.2e-78 298.9 284 59.2
RcHm_v2.0_Chr4g0405931 Rosa chinensis HOM05D007551 ORTHO05D009424 1.0e-77 295.8 285 60.0
TWI34G0706 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 3.0e-77 294.3 287 59.9
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 3.9e-77 293.9 282 59.6
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 1.1e-76 292.4 206 71.4
Sed0011000 Sechium edule HOM05D007551 ORTHO05D009424 1.6e-75 288.5 281 56.9
ClCG07G011220 Citrullus lanatus HOM05D007551 ORTHO05D009424 3.1e-74 284.3 281 55.5
Sed0007434 Sechium edule HOM05D007551 ORTHO05D009424 4.0e-74 283.9 268 58.6
MELO3C016242.2 Cucumis melo HOM05D007551 ORTHO05D009424 1.5e-73 282.0 281 55.9
CsaV3_4G007030 Cucumis sativus L. HOM05D007551 ORTHO05D009424 2.0e-73 281.6 281 56.2
EL10Ac5g11872 Beta vulgaris HOM05D007551 ORTHO05D009424 1.3e-72 278.9 279 54.1
Rhsim04G0146500 Rhododendron simsii HOM05D007551 ORTHO05D009424 1.3e-72 278.9 281 54.1
VMungo0251G2062 Vigna mungo HOM05D007551 ORTHO05D009424 1.7e-72 278.5 296 53.4
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 8.4e-72 276.2 295 53.2
Solyc11g005940.3 Solanum lycopersicum HOM05D007551 ORTHO05D009424 5.5e-71 273.5 289 52.6
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 7.1e-71 273.1 285 55.1
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 7.1e-71 273.1 285 53.7
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 1.2e-70 272.3 287 53.0
Potri.003G105700 Populus trichocarpa HOM05D007551 ORTHO05D009424 2.1e-70 271.6 250 58.8
PGSC0003DMG402028683 Solanum tuberosum HOM05D007551 ORTHO05D009424 6.0e-70 270.0 289 51.9
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 1.3e-69 268.9 283 52.3
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 2.3e-69 268.1 289 51.6
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 3.0e-69 267.7 232 56.9
Ah.12g056170 Amaranthus hybridus HOM05D000351 ORTHO05D009424 6.7e-69 266.5 285 52.3
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 5.7e-68 263.5 285 52.3
PGR042G1889 Punica granatum HOM05D007551 ORTHO05D009424 1.6e-67 261.9 251 54.2
Nitab4.5_0002667g0100 Nicotiana tabacum HOM05D007551 ORTHO05D009424 4.8e-67 260.4 289 49.8
Nitab4.5_0000856g0020 Nicotiana tabacum HOM05D007551 ORTHO05D009424 1.1e-66 259.2 289 49.8
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 2.4e-66 258.1 231 57.6
Glyma.16G058700 Glycine max HOM05D007551 ORTHO05D009424 1.2e-65 255.8 293 51.5
Lj4g0019089 Lotus japonicus HOM05D007551 ORTHO05D009424 1.5e-65 255.4 277 53.1
CAN.G652.9 Capsicum annuum HOM05D007551 ORTHO05D009424 4.5e-65 253.8 288 51.0
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 5.9e-65 253.4 284 50.7
Sabra03G0072700 Salix brachista HOM05D007551 ORTHO05D009424 1.0e-64 252.7 246 57.3
FAN04G0939 Fragaria x ananassa HOM05D007551 ORTHO05D009424 1.3e-64 252.3 284 51.8
Peaxi162Scf00619g00022 Petunia axillaris HOM05D007551 ORTHO05D009424 1.7e-64 251.9 283 49.1
Manes.17G006200 Manihot esculenta HOM05D007551 ORTHO05D009424 2.9e-64 251.1 240 57.5
Eucgr.E01036 Eucalyptus grandis HOM05D007551 ORTHO05D009424 4.2e-63 247.3 302 50.0
Phvul.003G277400 Phaseolus vulgaris HOM05D007551 ORTHO05D009424 5.5e-63 246.9 290 50.0
AT4G19440 Arabidopsis thaliana HOM05D007551 ORTHO05D009424 2.7e-62 244.6 291 50.2
Lsat_1_v5_gn_6_75081 Lactuca sativa HOM05D007551 ORTHO05D009424 2.7e-62 244.6 277 50.2
AL7G34670 Arabidopsis lyrata HOM05D007551 ORTHO05D009424 7.9e-62 243.0 296 49.7
Carub.0007s2177 Capsella rubella HOM05D007551 ORTHO05D009424 1.8e-61 241.9 286 51.0
Thhalv10024401m.g Eutrema salsugineum HOM05D007551 ORTHO05D009424 1.1e-60 239.2 285 49.1
BcaB03g11619 Brassica carinata HOM05D007551 ORTHO05D009424 2.0e-60 238.4 230 56.5
Sp7g18060 Schrenkiella parvula HOM05D007551 ORTHO05D009424 3.7e-59 234.2 283 50.2
Oeu040609.1 Olea europaea HOM05D007551 ORTHO05D009424 1.2e-57 229.2 228 51.3
Aa31LG6G2050 Aethionema arabicum HOM05D007551 ORTHO05D009424 2.6e-57 228.0 285 48.1
Oeu029773.2 Olea europaea HOM05D007551 ORTHO05D009424 3.8e-56 224.2 305 44.9
Cc00_g20060 Coffea canephora HOM05D007551 ORTHO05D009424 2.7e-54 218.0 262 48.1
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 1.0e-53 216.1 223 49.3
PSO210G4217 Papaver somniferum HOM05D007551 ORTHO05D009424 3.0e-53 214.5 288 45.5
Medtr8g071970 Medicago truncatula HOM05D007551 ORTHO05D009424 3.9e-53 214.2 264 48.9
ECA240G1023 Erigeron canadensis HOM05D000046 ORTHO05D000457 6.7e-53 213.4 205 52.2
PSO210G5788 Papaver somniferum HOM05D007551 ORTHO05D009424 1.5e-52 212.2 239 49.8
Migut.E01387 Erythranthe guttata HOM05D007551 ORTHO05D009424 2.8e-51 208.0 274 45.3
AUR62044750 Chenopodium quinoa HOM05D007551 ORTHO05D009424 5.9e-49 200.3 174 56.3
SalBow1G3247 Salvia bowleyana HOM05D007551 ORTHO05D009424 7.7e-49 199.9 288 43.4
SalBow8G4006 Salvia bowleyana HOM05D007551 ORTHO05D009424 7.7e-49 199.9 288 43.4
SGA_v2.0_scaffold121G33050 Striga asiatica HOM05D007551 ORTHO05D009424 2.9e-48 198.0 297 42.1
TPR.G16813 Trifolium pratense HOM05D007551 ORTHO05D009424 7.2e-47 193.4 225 50.2
MSTRG.1750 Avicennia marina HOM05D007551 ORTHO05D009424 1.6e-46 192.2 303 40.3
Psat4g109680 Pisum sativum HOM05D007551 ORTHO05D009424 3.6e-46 191.0 239 49.0
Cpa.g.c44844 Carica papaya HOM05D007551 ORTHO05D009424 8.0e-46 189.9 216 51.4
CSS0048505 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 5.7e-44 183.7 134 64.9
CSS0008559 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 1.7e-43 182.2 134 64.2
Aqoxy2G03897 Aquilegia oxysepala HOM05D007551 ORTHO05D009424 9.1e-42 176.4 179 50.8
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 6.5e-40 170.2 195 48.2
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 1.2e-38 166.0 195 46.7
Cpa.g.sc3.432 Carica papaya HOM05D007551 ORTHO05D009424 3.6e-38 164.5 122 61.5
Lalb_Chr05g0229381 Lupinus albus HOM05D007551 ORTHO05D009424 2.3e-37 161.8 145 58.6
Lj8C372G5 Lonicera japonica HOM05D007551 ORTHO05D009424 1.2e-33 149.4 111 62.2
CARHR226230 Cardamine hirsuta HOM05D007551 ORTHO05D009424 1.2e-30 139.4 268 37.3
MD16G1287400 Malus domestica HOM05D007551 ORTHO05D009424 2.6e-28 131.7 72 88.9
Oeu044967.1 Olea europaea HOM05D007551 ORTHO05D009424 1.8e-26 125.6 124 47.6
HPP92_013860 Vanilla planifolia HOM05D007551 ORTHO05D009424 2.4e-26 125.2 223 35.9
FAN17G3133 Fragaria x ananassa HOM05D007551 ORTHO05D009424 2.0e-20 105.5 117 47.9
Ca_22472_v3 Cicer arietinum L. HOM05D007551 ORTHO05D009424 5.7e-20 104.0 94 54.3
ATR0626G221 Amborella trichopoda HOM05D007551 ORTHO05D009424 3.7e-19 101.3 195 39.0
SalBow8G0178 Salvia bowleyana HOM05D007551 ORTHO05D009424 1.4e-13 82.8 75 50.7
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 5.8e-12 77.4 216 26.9
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.7e-11 75.9 250 27.2
HPP92_013845 Vanilla planifolia HOM05D007551 ORTHO05D009424 1.7e-11 75.9 101 39.6
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 2.9e-11 75.1 183 31.7
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 2.9e-11 75.1 183 33.3
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 8.3e-11 73.6 193 32.1
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.9e-10 72.4 240 28.3
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.4e-10 72.0 192 32.3
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 7.0e-10 70.5 286 27.6
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 1.2e-09 69.7 184 28.3
CDE09G0292 Ceratophyllum demersum HOM05D007212 ORTHO05D009094 2.7e-09 68.6 185 29.2
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 2.7e-09 68.6 185 27.6
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 2.7e-09 68.6 206 28.6
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 3.5e-09 68.2 194 29.9
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 3.5e-09 68.2 206 28.6
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 4.6e-09 67.8 203 26.6
Phvul.004G009945 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 6.0e-09 67.4 293 27.6
Phvul.004G009809 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 1.0e-08 66.6 273 28.2
Rhsim06G0174700 Rhododendron simsii HOM05D005287 ORTHO05D006893 1.3e-08 66.2 252 30.6
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 1.7e-08 65.9 184 28.8
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 1.7e-08 65.9 172 31.4
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 1.7e-08 65.9 192 28.1
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 1.7e-08 65.9 197 28.4
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 3.0e-08 65.1 192 31.2
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 3.9e-08 64.7 188 23.9
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 3.9e-08 64.7 188 23.9
Phvul.004G009900 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 5.0e-08 64.3 276 28.3
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 5.0e-08 64.3 188 30.3
ClCG01G008820 Citrullus lanatus HOM05D007291 ORTHO05D009038 6.6e-08 63.9 221 24.4
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 8.6e-08 63.5 240 25.8
Zm00001eb151970 Zea mays HOM05D059268 ORTHO05D009424 8.6e-08 63.5 101 35.6
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 1.1e-07 63.2 246 27.6
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 1.1e-07 63.2 196 26.0
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 1.1e-07 63.2 220 24.1
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 1.5e-07 62.8 190 25.3
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 1.5e-07 62.8 184 29.9
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 1.5e-07 62.8 193 28.5
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 1.5e-07 62.8 186 28.5
C04p47210 Brassica napus HOM05D007358 ORTHO05D009117 1.9e-07 62.4 261 27.2
SHI30104 Sapria himalayana HOM05D007291 ORTHO05D009038 2.5e-07 62.0 193 28.0
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 2.5e-07 62.0 193 25.9
MD07G1079700 Malus domestica HOM05D007455 ORTHO05D009431 3.3e-07 61.6 170 27.1
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 3.3e-07 61.6 188 23.4
BolC4t26320H Brassica oleracea HOM05D007358 ORTHO05D009117 4.3e-07 61.2 261 26.8
Ah.02g128350 Amaranthus hybridus HOM05D007212 ORTHO05D009094 5.6e-07 60.8 191 27.2
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 5.6e-07 60.8 102 35.3
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 9.5e-07 60.1 187 27.8
Phvul.004G009341 Phaseolus vulgaris HOM05D007358 ORTHO05D009117 9.5e-07 60.1 276 27.2
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 1.2e-06 59.7 176 29.0
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 1.2e-06 59.7 217 27.2
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 1.2e-06 59.7 275 26.2
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 1.6e-06 59.3 179 27.9
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 2.1e-06 58.9 210 25.2
SEGI_07640 Sequoiadendron giganteum HOM05D007763 ORTHO05D009537 2.1e-06 58.9 190 27.4
CAN.G569.38 Capsicum annuum HOM05D007956 ORTHO05D010152 2.8e-06 58.5 188 26.1
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 2.8e-06 58.5 189 26.5
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 2.8e-06 58.5 225 26.7
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 3.6e-06 58.2 256 23.8
PSO339G3988 Papaver somniferum HOM05D007212 ORTHO05D009094 3.6e-06 58.2 187 27.3
PGR119G1050 Punica granatum HOM05D007212 ORTHO05D009094 3.6e-06 58.2 206 27.7
Ca_00776_v3 Cicer arietinum L. HOM05D000091 ORTHO05D009038 4.7e-06 57.8 197 25.9
Gorai.003G135500 Gossypium raimondii HOM05D007212 ORTHO05D009094 6.2e-06 57.4 212 26.9
TAR374G1349 Trochodendron aralioides HOM05D007893 ORTHO05D010042 6.2e-06 57.4 197 27.9
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 8.0e-06 57.0 174 31.0
CDE02G2785 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 8.0e-06 57.0 81 38.3
AUR62040786 Chenopodium quinoa HOM05D001653 ORTHO05D001751 8.0e-06 57.0 190 27.4
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 8.0e-06 57.0 192 27.6
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 8.0e-06 57.0 249 26.9
SGA_v2.0_scaffold25G10745 Striga asiatica HOM05D007893 ORTHO05D010042 8.0e-06 57.0 110 31.8
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 8.0e-06 57.0 189 27.5


User provided reference genes

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