Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G014700 Prunus persica HOM05D005127 ORTHO05D006022 1.3e-213 746.1 370 100.0
MD09G1279600 Malus domestica HOM05D005127 ORTHO05D006022 2.4e-188 662.1 370 88.6
RcHm_v2.0_Chr3g0488741 Rosa chinensis HOM05D005127 ORTHO05D006022 2.8e-160 568.9 370 77.6
FAN23G3138 Fragaria x ananassa HOM05D005127 ORTHO05D006022 9.9e-158 560.5 371 75.5
CsaV3_3G021100 Cucumis sativus L. HOM05D005127 ORTHO05D006022 2.9e-157 558.9 370 73.8
FvH4_1g27360 Fragaria vesca HOM05D005127 ORTHO05D006022 3.8e-157 558.5 373 75.3
FAN28G1653 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.8e-157 558.5 373 75.3
FAN28G2393 Fragaria x ananassa HOM05D005127 ORTHO05D006022 3.8e-157 558.5 373 75.3
FAN19G2113 Fragaria x ananassa HOM05D005127 ORTHO05D006022 8.4e-157 557.4 373 75.1
ClCG05G011360 Citrullus lanatus HOM05D005127 ORTHO05D006022 2.4e-156 555.8 370 72.7
MELO3C020241.2 Cucumis melo HOM05D005127 ORTHO05D006022 5.4e-156 554.7 370 73.2
Sed0023234 Sechium edule HOM05D005127 ORTHO05D006022 1.0e-154 550.4 370 73.5
FAN26G1075 Fragaria x ananassa HOM05D005127 ORTHO05D006022 8.7e-154 547.4 373 74.3
CiPaw.03G076300 Carya illinoinensis HOM05D005127 ORTHO05D006022 5.8e-150 534.6 370 71.6
Manes.10G079000 Manihot esculenta HOM05D005127 ORTHO05D006022 5.5e-148 528.1 377 69.5
CANSAT21G1480 Cannabis sativa HOM05D005127 ORTHO05D006022 7.9e-147 524.2 370 73.0
Sabra04G0053400 Salix brachista HOM05D005127 ORTHO05D006022 7.9e-147 524.2 372 69.1
Cfa007754 Carpinus fangiana HOM05D005127 ORTHO05D006022 1.3e-146 523.5 370 71.1
Potri.017G139800 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.3e-146 523.5 369 68.6
Haze_14318 Corylus avellana HOM05D005127 ORTHO05D006022 2.3e-146 522.7 370 70.5
Potri.004G080600 Populus trichocarpa HOM05D005127 ORTHO05D006022 1.5e-145 520.0 372 68.3
VMungo0647G1176 Vigna mungo HOM05D005127 ORTHO05D006022 1.4e-143 513.5 373 69.2
Sabra17G0118000 Salix brachista HOM05D005127 ORTHO05D006022 3.1e-143 512.3 369 66.9
Lalb_Chr10g0104061 Lupinus albus HOM05D005127 ORTHO05D006022 6.9e-143 511.1 373 66.8
TAR371G0217 Trochodendron aralioides HOM05D005127 ORTHO05D006022 3.4e-142 508.8 370 68.6
Phvul.008G240900 Phaseolus vulgaris HOM05D005127 ORTHO05D006022 2.2e-141 506.1 373 67.8
Glyma.14G210400 Glycine max HOM05D005127 ORTHO05D006022 5.0e-141 505.0 375 68.0
Cpa.g.sc178.24 Carica papaya HOM05D005127 ORTHO05D006022 4.2e-140 501.9 375 66.9
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla HOM05D005127 ORTHO05D006022 1.2e-139 500.4 370 66.8
Atru.chr1.2154 Acer truncatum HOM05D005127 ORTHO05D006022 1.6e-139 500.0 370 67.8
CSS0034699 Camellia sinensis var. sinensis HOM05D005127 ORTHO05D006022 1.3e-138 496.9 370 68.4
Glyma.02G240800 Glycine max HOM05D005127 ORTHO05D006022 2.3e-138 496.1 376 67.8
Psat2g042880 Pisum sativum HOM05D005127 ORTHO05D006022 1.9e-137 493.0 377 66.3
QL02p064340 Quercus lobata HOM05D005127 ORTHO05D006022 2.5e-137 492.7 362 68.5
Lalb_Chr17g0345881 Lupinus albus HOM05D005127 ORTHO05D006022 3.3e-137 492.3 375 66.9
Ca_05761_v3 Cicer arietinum L. HOM05D005127 ORTHO05D006022 4.8e-136 488.4 380 65.0
Ciclev10012019m.g Citrus clementina HOM05D005127 ORTHO05D006022 1.1e-135 487.3 372 65.3
Duzib138G1903 Durio zibethinus HOM05D005127 ORTHO05D006022 1.4e-135 486.9 375 65.3
Medtr5g076930 Medicago truncatula HOM05D005127 ORTHO05D006022 4.1e-135 485.3 374 66.3
Thecc.04G065100 Theobroma cacao HOM05D005127 ORTHO05D006022 4.1e-135 485.3 373 66.0
PSO724G0684 Papaver somniferum HOM05D005127 ORTHO05D006022 1.5e-134 483.4 375 64.5
TWI74G1018 Tripterygium wilfordii HOM05D005127 ORTHO05D006022 3.4e-134 482.3 372 64.8
COL.COLO4_19768 Corchorus olitorius HOM05D005127 ORTHO05D006022 4.5e-134 481.9 377 63.7
PGR042G2448 Punica granatum HOM05D005127 ORTHO05D006022 4.5e-134 481.9 380 65.3
TPR.G5353 Trifolium pratense HOM05D005127 ORTHO05D006022 4.5e-134 481.9 387 64.6
Rhsim08G0021200 Rhododendron simsii HOM05D005127 ORTHO05D006022 5.9e-134 481.5 374 65.5
MBI06_g13889_MAGBIO Magnolia biondii HOM05D005127 ORTHO05D006022 7.7e-134 481.1 369 65.0
PSO729G0281 Papaver somniferum HOM05D005127 ORTHO05D006022 1.1e-132 477.2 375 63.5
Gohir.A07G074000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.5e-132 476.1 379 63.6
Gorai.001G083200 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.6e-131 473.4 379 63.6
Gohir.D07G078700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 2.7e-131 472.6 379 63.3
Eucgr.H04888 Eucalyptus grandis HOM05D005127 ORTHO05D006022 7.9e-131 471.1 381 64.0
Aqoxy3G04119 Aquilegia oxysepala HOM05D005127 ORTHO05D006022 2.3e-130 469.5 370 63.2
CARHR077230 Cardamine hirsuta HOM05D005127 ORTHO05D006022 1.5e-129 466.8 376 62.5
Sp3g02250 Schrenkiella parvula HOM05D005127 ORTHO05D006022 1.7e-128 463.4 376 61.7
ATR0807G162 Amborella trichopoda HOM05D005127 ORTHO05D006022 3.1e-127 459.1 370 61.6
AT3G03210 Arabidopsis thaliana HOM05D005127 ORTHO05D006022 4.1e-127 458.8 377 61.3
AL3G12820 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 6.9e-127 458.0 377 61.3
Aa31LG5G13690 Aethionema arabicum HOM05D005127 ORTHO05D006022 1.2e-126 457.2 376 61.4
Thhalv10020974m.g Eutrema salsugineum HOM05D005127 ORTHO05D006022 1.5e-126 456.8 376 61.4
Carub.0003s0236 Capsella rubella HOM05D005127 ORTHO05D006022 4.5e-126 455.3 377 61.5
BcaC05g30317 Brassica carinata HOM05D005127 ORTHO05D006022 5.0e-125 451.8 372 61.3
LjContig00141g0000865 Lotus japonicus HOM05D005127 ORTHO05D006022 5.0e-125 451.8 375 63.7
BcaC05g30528 Brassica carinata HOM05D005127 ORTHO05D006022 1.1e-124 450.7 372 60.2
C05p63600 Brassica napus HOM05D005127 ORTHO05D006022 9.4e-124 447.6 372 59.7
BolC5t35029H Brassica oleracea HOM05D005127 ORTHO05D006022 9.4e-124 447.6 372 59.7
Gorai.002G111000 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.1e-123 446.4 381 60.1
Lj4P252T15 Lonicera japonica HOM05D005127 ORTHO05D006022 2.1e-123 446.4 356 64.6
GSVIVG01035235001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.1e-123 444.9 371 63.6
A05p43980 Brassica napus HOM05D005127 ORTHO05D006022 1.4e-122 443.7 373 59.5
Gohir.D01G085400 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.8e-122 443.4 381 59.6
Gohir.A01G100900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.1e-121 440.7 381 59.6
BraSC90t46712Z Brassica rapa HOM05D005127 ORTHO05D006022 2.0e-121 439.9 376 58.2
Sc09g0004500 Simmondsia chinensis HOM05D005127 ORTHO05D006022 1.3e-120 437.2 376 60.9
Dinv19078 Davidia involucrata HOM05D005127 ORTHO05D006022 1.1e-119 434.1 370 62.2
Actinidia35707 Actinidia chinensis HOM05D005127 ORTHO05D006022 2.6e-118 429.5 372 60.5
THA.LOC104827223 Tarenaya hassleriana HOM05D005127 ORTHO05D006022 4.5e-118 428.7 381 59.1
MSTRG.15431 Avicennia marina HOM05D005127 ORTHO05D006022 3.2e-116 422.5 371 58.5
Cc07_g12800 Coffea canephora HOM05D005127 ORTHO05D006022 1.6e-115 420.2 377 58.6
PGSC0003DMG400016729 Solanum tuberosum HOM05D005127 ORTHO05D006022 1.6e-115 420.2 378 58.7
Nitab4.5_0000091g0380 Nicotiana tabacum HOM05D005127 ORTHO05D006022 2.7e-115 419.5 383 59.0
Nitab4.5_0004645g0030 Nicotiana tabacum HOM05D005127 ORTHO05D006022 4.7e-115 418.7 383 58.2
Solyc03g031850.1 Solanum lycopersicum HOM05D005127 ORTHO05D006022 1.8e-114 416.8 374 59.4
Sopen03g005720 Solanum pennellii HOM05D005127 ORTHO05D006022 8.8e-114 414.5 374 58.8
CAN.G404.4 Capsicum annuum HOM05D005127 ORTHO05D006022 1.1e-113 414.1 374 59.4
Peaxi162Scf00521g00053 Petunia axillaris HOM05D005127 ORTHO05D006022 2.0e-113 413.3 371 59.8
Gorai.007G188500 Gossypium raimondii HOM05D005127 ORTHO05D006022 7.4e-113 411.4 376 53.7
PGSC0003DMG400042292 Solanum tuberosum HOM05D005127 ORTHO05D006022 7.4e-113 411.4 379 58.6
SGA_v2.0_scaffold135G34932 Striga asiatica HOM05D005127 ORTHO05D006022 9.7e-113 411.0 372 58.1
HanXRQChr14g0443471 Helianthus annuus HOM05D005127 ORTHO05D006022 1.3e-112 410.6 372 59.1
Sopen02g025870 Solanum pennellii HOM05D005127 ORTHO05D006022 2.2e-112 409.8 378 57.4
Oeu012525.1 Olea europaea HOM05D005127 ORTHO05D006022 6.3e-112 408.3 389 56.6
Migut.H02248 Erythranthe guttata HOM05D005127 ORTHO05D006022 3.5e-110 402.5 376 56.9
Nitab4.5_0007410g0020 Nicotiana tabacum HOM05D005127 ORTHO05D006022 3.5e-110 402.5 371 57.4
AUR62037482 Chenopodium quinoa HOM05D005127 ORTHO05D009825 7.7e-110 401.4 375 57.6
Gohir.A11G169700 Gossypium hirsutum HOM05D005127 ORTHO05D006022 1.7e-109 400.2 363 53.4
DCAR_003746 Daucus carota HOM05D005127 ORTHO05D006022 6.5e-109 398.3 357 56.3
Lsat_1_v5_gn_2_71721 Lactuca sativa HOM05D005127 ORTHO05D006022 2.7e-107 392.9 362 58.8
Gohir.D11G175900 Gossypium hirsutum HOM05D005127 ORTHO05D006022 6.8e-106 388.3 370 52.7
Oeu039702.1 Olea europaea HOM05D005127 ORTHO05D006022 6.8e-106 388.3 389 53.2
Nitab4.5_0010422g0010 Nicotiana tabacum HOM05D005127 ORTHO05D006022 7.5e-105 384.8 368 56.0
CAN.G1681.7 Capsicum annuum HOM05D005127 ORTHO05D006022 2.2e-104 383.3 371 55.8
SHI30090 Sapria himalayana HOM05D005127 ORTHO05D006022 4.5e-102 375.6 387 53.0
SalBow3G2114 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.2e-96 356.7 340 54.7
SalBow3G1912 Salvia bowleyana HOM05D005127 ORTHO05D006022 2.8e-96 356.3 340 54.7
SEGI_34462 Sequoiadendron giganteum HOM05D005127 ORTHO05D006022 9.8e-89 331.3 465 43.0
Zm00001eb393730 Zea mays HOM05D005127 ORTHO05D006022 2.9e-88 329.7 378 47.4
CDE01G0221 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 1.1e-87 327.8 298 54.4
Os10g0539400 Oryza sativa ssp. japonica HOM05D005127 ORTHO05D006022 1.6e-86 323.9 378 46.8
ECA238G3642 Erigeron canadensis HOM05D005127 ORTHO05D006022 3.5e-86 322.8 285 59.3
CDE02G3442 Ceratophyllum demersum HOM05D005127 ORTHO05D006022 2.5e-84 316.6 369 45.8
Mapoly0003s0310 Marchantia polymorpha HOM05D005127 ORTHO05D006022 5.8e-81 305.4 379 44.6
Zm00001eb022160 Zea mays HOM05D005127 ORTHO05D006022 1.9e-79 300.4 358 46.1
Migut.H02247 Erythranthe guttata HOM05D005127 ORTHO05D006022 4.6e-70 269.2 347 43.5
Oeu045801.1 Olea europaea HOM05D005127 ORTHO05D006022 2.5e-68 263.5 347 43.2
Pp3c8_14800 Physcomitrium patens HOM05D005127 ORTHO05D006022 1.1e-66 258.1 377 39.0
SMO141G0134 Selaginella moellendorffii HOM05D005127 ORTHO05D006022 6.8e-66 255.4 376 40.4
unitig_699.g19573 Utricularia gibba HOM05D005127 ORTHO05D006022 8.1e-59 231.9 229 55.0
AUR62004769 Chenopodium quinoa HOM05D005127 ORTHO05D006022 7.6e-57 225.3 205 55.1
Solyc02g081230.4 Solanum lycopersicum HOM05D005127 ORTHO05D006022 6.4e-56 222.2 186 59.7
HPP92_020636 Vanilla planifolia HOM05D005127 ORTHO05D006022 5.1e-53 212.6 206 49.0
PSO063G7663 Papaver somniferum HOM05D005127 ORTHO05D006022 2.8e-51 206.8 174 60.3
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis HOM05D005127 ORTHO05D006022 5.4e-47 192.6 288 37.5
Lsat_1_v5_gn_2_6720 Lactuca sativa HOM05D005127 ORTHO05D006022 4.3e-44 183.0 167 57.5
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis HOM05D005127 ORTHO05D006022 1.2e-41 174.9 248 39.9
RcHm_v2.0_Chr5g0027411 Rosa chinensis HOM05D005127 ORTHO05D006022 1.5e-41 174.5 234 47.4
CBR_g39794 Chara braunii HOM05D005127 ORTHO05D006022 6.4e-40 169.1 301 31.9
Lsat_1_v5_gn_5_127001 Lactuca sativa HOM05D005127 ORTHO05D006022 1.2e-38 164.9 148 56.8
Gorai.004G162300 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.7e-38 163.7 129 60.5
Gorai.009G350000 Gossypium raimondii HOM05D000154 ORTHO05D006022 3.9e-37 159.8 129 58.9
Gorai.005G117100 Gossypium raimondii HOM05D005127 ORTHO05D006022 1.4e-34 151.4 129 58.9
RcHm_v2.0_Chr4g0398381 Rosa chinensis HOM05D005127 ORTHO05D006022 1.9e-31 141.0 95 78.9
Medtr5g076940 Medicago truncatula HOM05D005127 ORTHO05D006022 2.1e-30 137.5 109 66.1
Gorai.011G105200 Gossypium raimondii HOM05D000154 ORTHO05D006022 1.1e-26 125.2 92 59.8
Gohir.D05G325801 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.4e-26 124.0 92 59.8
RcHm_v2.0_Chr5g0042551 Rosa chinensis HOM05D005127 ORTHO05D006022 2.4e-26 124.0 115 56.5
Gohir.D08G156000 Gossypium hirsutum HOM05D005127 ORTHO05D006022 5.3e-26 122.9 92 58.7
Gorai.002G056700 Gossypium raimondii HOM05D005127 ORTHO05D006022 2.6e-25 120.6 92 58.7
Gohir.D04G098033 Gossypium hirsutum HOM05D005127 ORTHO05D006022 4.2e-23 113.2 97 54.6
MCO15G483 Micromonas commoda HOM05D005127 ORTHO05D006022 1.3e-19 101.7 286 26.6
AL3G25840 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 6.9e-18 95.9 94 53.2
AL8G37650 Arabidopsis lyrata HOM05D005127 ORTHO05D006022 6.9e-18 95.9 94 53.2
Gohir.D02G103100 Gossypium hirsutum HOM05D000154 ORTHO05D006022 2.6e-17 94.0 69 59.4
Dinv28241 Davidia involucrata HOM05D005127 ORTHO05D006022 2.5e-15 87.4 109 47.7
GSVIVG01034874001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.1e-14 82.8 79 57.0
vmacro09980 Vaccinium macrocarpon HOM05D000060 ORTHO05D003150 1.4e-13 81.6 78 55.1
GSVIVG01000363001 Vitis vinifera HOM05D005127 ORTHO05D006022 6.7e-13 79.3 65 61.5
A09p28600 Brassica napus HOM05D005127 ORTHO05D006022 7.4e-12 75.9 58 65.5
GSVIVG01038053001 Vitis vinifera HOM05D005127 ORTHO05D006022 9.7e-12 75.5 73 54.8
Nn2g14442 Nelumbo nucifera HOM05D005127 ORTHO05D006022 1.4e-10 71.6 45 80.0


User provided reference genes

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