Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 2.7e-294 1014.6 529 100.0
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 6.2e-270 933.7 529 91.1
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 9.9e-252 873.2 530 85.1
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 1.1e-250 869.8 529 83.9
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 1.2e-249 866.3 529 83.6
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 6.6e-248 860.5 536 82.1
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 1.5e-247 859.4 529 82.8
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 1.9e-247 859.0 531 82.5
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 9.6e-247 856.7 548 81.2
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 1.3e-246 856.3 527 83.3
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 1.3e-246 856.3 518 83.6
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 1.6e-246 855.9 539 82.4
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 2.4e-245 852.0 552 80.6
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 3.1e-245 851.7 518 83.8
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 1.5e-244 849.4 540 81.1
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.3e-243 846.3 516 84.7
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 2.2e-243 845.5 521 83.5
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 2.9e-243 845.1 518 82.8
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 4.9e-243 844.3 523 82.8
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 4.9e-243 844.3 518 84.7
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 5.4e-242 840.9 518 82.4
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 9.3e-242 840.1 518 82.2
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.2e-241 839.7 533 80.3
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 3.5e-241 838.2 522 83.5
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 4.6e-241 837.8 542 81.0
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 5.1e-240 834.3 536 81.5
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 1.5e-239 832.8 531 80.2
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 4.3e-239 831.2 531 79.1
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 5.6e-239 830.9 531 80.0
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 8.1e-238 827.0 529 78.8
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 1.8e-237 825.9 502 83.5
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 2.4e-237 825.5 529 78.8
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 4.0e-237 824.7 529 78.8
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 5.3e-237 824.3 536 79.5
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 9.0e-237 823.5 525 80.6
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 2.0e-236 822.4 516 79.7
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 3.4e-236 821.6 525 79.6
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 1.1e-234 816.6 539 77.7
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.1e-234 816.6 522 82.2
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 1.9e-234 815.8 530 79.1
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.0e-232 810.1 522 81.2
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.3e-232 809.7 524 80.0
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.3e-232 808.9 522 81.2
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 3.9e-232 808.1 537 77.8
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 3.3e-231 805.1 533 77.5
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 1.1e-229 800.0 529 79.8
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 6.9e-229 797.3 542 74.9
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 3.8e-227 791.6 501 79.2
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 6.5e-227 790.8 519 76.3
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 1.9e-226 789.3 501 79.6
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 2.5e-226 788.9 501 79.2
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 5.5e-226 787.7 543 75.3
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 7.1e-226 787.3 501 79.0
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 1.6e-225 786.2 518 80.1
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 4.6e-225 784.6 503 78.7
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 6.0e-225 784.3 501 78.6
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.3e-224 783.1 529 78.1
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 1.3e-224 783.1 509 79.0
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 6.7e-224 780.8 508 78.1
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 6.7e-224 780.8 535 75.0
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 2.5e-223 778.9 500 78.2
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 3.3e-223 778.5 503 78.3
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 5.7e-223 777.7 529 75.6
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 2.1e-222 775.8 527 75.7
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 7.6e-220 767.3 503 77.5
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 1.0e-219 766.9 532 75.0
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 1.7e-219 766.1 545 73.4
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 2.9e-219 765.4 531 74.4
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 5.5e-218 761.1 525 74.3
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 1.6e-217 759.6 527 75.5
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 2.3e-216 755.7 540 72.8
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 2.3e-216 755.7 547 72.2
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 5.1e-216 754.6 501 77.0
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 1.1e-215 753.4 541 73.4
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 4.8e-214 748.0 526 73.8
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 5.3e-213 744.6 475 80.2
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 5.3e-213 744.6 521 72.6
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 1.5e-212 743.0 541 71.0
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 2.9e-211 738.8 504 76.2
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 1.1e-210 736.9 623 65.3
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 4.2e-210 734.9 502 75.7
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.6e-209 733.0 630 64.8
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 7.4e-207 724.2 521 71.6
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 2.4e-197 692.6 493 72.2
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 2.9e-195 685.6 519 67.2
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 3.8e-195 685.3 519 68.2
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 6.5e-195 684.5 500 72.4
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 8.5e-195 684.1 592 64.5
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 9.4e-194 680.6 535 68.2
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.3e-192 676.0 560 65.2
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.0e-187 660.6 525 64.2
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.3e-184 649.4 424 78.5
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 1.2e-183 647.1 448 74.8
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 4.2e-178 628.6 536 60.8
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 4.2e-178 628.6 536 60.8
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 4.9e-174 615.1 470 70.0
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 4.1e-173 612.1 480 65.2
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 5.0e-163 578.6 400 73.2
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 2.1e-161 573.2 487 60.4
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 5.4e-157 558.5 521 54.9
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 6.6e-155 551.6 360 77.2
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 3.1e-152 542.7 361 77.8
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 2.6e-151 539.7 382 74.1
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 7.1e-141 505.0 328 77.1
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 2.3e-131 473.4 320 75.9
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 2.4e-120 436.8 249 86.3
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 4.0e-120 436.0 249 86.3
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 1.5e-114 417.5 456 55.9
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 7.9e-108 395.2 509 43.8
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.7e-102 377.5 240 79.2
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 1.0e-99 368.2 486 43.4
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 1.1e-90 338.2 495 40.6
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 3.0e-75 287.0 328 51.8
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 5.2e-75 286.2 173 81.5
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 5.9e-55 219.5 498 34.3
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 6.6e-54 216.1 199 60.8
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 4.7e-52 209.9 118 90.7
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 7.5e-50 202.6 504 33.5
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 5.4e-48 196.4 493 34.1
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 2.1e-39 167.9 293 41.0
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 2.1e-39 167.9 467 32.8
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 2.3e-38 164.5 115 73.9
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 2.8e-36 157.5 463 32.4
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 3.6e-36 157.1 493 31.4
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.5e-29 134.4 298 36.6
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 5.6e-29 133.3 277 38.6
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 5.6e-29 133.3 86 74.4
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 4.7e-28 130.2 335 34.3
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 4.4e-26 123.6 300 33.7
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 9.9e-26 122.5 233 39.9
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 4.9e-25 120.2 210 41.0
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 2.7e-23 114.4 353 32.0
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 7.8e-23 112.8 157 43.9
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 8.7e-22 109.4 275 30.9
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 2.5e-21 107.8 157 42.7
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 4.3e-21 107.1 209 39.2
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 4.3e-21 107.1 208 40.4
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 4.8e-20 103.6 417 29.7
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 6.2e-20 103.2 358 29.9
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 8.1e-20 102.8 63 74.6
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 2.4e-19 101.3 303 29.7
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 5.3e-19 100.1 416 29.1
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 5.3e-19 100.1 74 63.5
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 9.9e-18 95.9 239 30.5
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 6.0e-15 86.7 326 29.8
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 3.6e-12 77.4 288 30.2
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-10 72.4 140 39.3
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 2.7e-07 61.2 32 87.5
FAN21G2314 Fragaria x ananassa HOM05D027463 ORTHO05D206097 1.3e-06 58.9 48 64.6
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 2.3e-06 58.2 45 66.7
arahy.Tifrunner.gnm1.ann1.0EHY87 Arachis hypogaea HOM05D004017 ORTHO05D004612 6.7e-06 56.6 57 52.6
FvH4_2g02220 Fragaria vesca HOM05D027463 ORTHO05D035425 8.7e-06 56.2 44 65.9


User provided reference genes

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