Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 6.7e-97 357.5 193 100.0
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 1.0e-68 263.8 201 75.6
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 3.6e-66 255.4 199 73.9
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 5.7e-48 194.9 195 65.1
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 3.7e-47 192.2 195 64.6
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 6.3e-47 191.4 195 64.1
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 2.0e-45 186.4 168 68.5
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 5.9e-45 184.9 195 63.6
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 5.0e-36 155.2 141 68.8
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.1e-35 154.1 210 51.9
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 5.5e-35 151.8 193 52.3
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 2.1e-34 149.8 198 53.0
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 2.1e-34 149.8 202 52.0
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.4e-33 147.1 196 54.1
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.8e-33 146.7 202 53.5
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 6.8e-33 144.8 200 51.5
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.9e-31 138.7 202 51.0
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 1.1e-30 137.5 208 48.6
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.8e-30 136.7 187 54.5
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 5.4e-30 135.2 205 49.3
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 8.6e-28 127.9 216 44.4
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 5.6e-27 125.2 199 43.7
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 1.6e-26 123.6 200 46.0
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 3.6e-26 122.5 180 49.4
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 6.1e-26 121.7 167 47.9
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 1.4e-25 120.6 169 46.7
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 4.0e-25 119.0 194 45.4
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 6.8e-25 118.2 193 46.6
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 1.2e-24 117.5 191 42.9
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 2.0e-24 116.7 188 44.7
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 2.0e-24 116.7 185 45.4
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 2.0e-24 116.7 194 44.8
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 3.4e-24 115.9 200 43.0
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 4.4e-24 115.5 172 44.8
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 7.5e-24 114.8 172 44.8
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 7.5e-24 114.8 187 47.6
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.7e-23 113.6 211 45.5
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 1.7e-23 113.6 208 44.7
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.7e-23 113.6 180 42.8
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 1.7e-23 113.6 162 46.9
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 2.2e-23 113.2 216 44.9
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 2.9e-23 112.8 192 44.3
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 4.9e-23 112.1 200 45.0
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 6.4e-23 111.7 188 47.9
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 6.4e-23 111.7 171 44.4
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 6.4e-23 111.7 187 46.5
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 1.1e-22 110.9 196 45.9
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.1e-22 110.9 180 43.9
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.1e-22 110.9 180 43.9
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 1.4e-22 110.5 186 46.2
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 1.4e-22 110.5 192 45.3
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 1.9e-22 110.2 193 44.0
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 2.4e-22 109.8 173 45.7
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 3.2e-22 109.4 190 42.1
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 5.4e-22 108.6 199 41.7
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 2.0e-21 106.7 213 43.7
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 2.7e-21 106.3 143 51.7
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 7.8e-21 104.8 203 41.9
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 1.0e-20 104.4 212 41.5
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 1.3e-20 104.0 204 42.6
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 1.3e-20 104.0 205 38.5
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 2.3e-20 103.2 208 38.9
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 3.9e-20 102.4 204 38.7
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 3.9e-20 102.4 204 38.7
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 8.6e-20 101.3 207 42.5
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.1e-19 100.9 203 41.4
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 2.5e-19 99.8 192 40.6
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 3.3e-19 99.4 209 40.2
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 4.3e-19 99.0 216 37.5
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 5.6e-19 98.6 199 39.2
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 5.6e-19 98.6 194 39.7
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 7.3e-19 98.2 187 42.8
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 9.5e-19 97.8 81 65.4
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 4.7e-18 95.5 204 39.7
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.2e-18 95.1 192 38.5
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 8.1e-18 94.7 196 39.8
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 2.3e-17 93.2 173 43.9
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 4.0e-17 92.4 195 40.0
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 5.2e-17 92.0 203 38.4
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 5.2e-17 92.0 203 38.4
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 1.5e-16 90.5 209 39.7
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 2.0e-16 90.1 216 35.6
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.0e-16 90.1 194 40.7
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 2.6e-16 89.7 201 38.8
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 2.6e-16 89.7 200 40.5
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 3.4e-16 89.4 183 41.5
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 3.4e-16 89.4 231 35.1
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 5.8e-16 88.6 181 42.0
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 7.5e-16 88.2 184 39.7
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 9.8e-16 87.8 182 39.0
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.3e-15 87.4 211 39.8
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 2.2e-15 86.7 209 38.3
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 2.2e-15 86.7 150 44.0
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 2.9e-15 86.3 113 48.7
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 3.7e-15 85.9 210 39.0
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 4.9e-15 85.5 214 35.0
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 4.9e-15 85.5 223 36.8
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 4.9e-15 85.5 229 36.2
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 4.9e-15 85.5 172 40.1
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 6.4e-15 85.1 174 40.8
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 6.4e-15 85.1 195 41.0
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 6.4e-15 85.1 201 38.3
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 6.4e-15 85.1 208 38.0
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 6.4e-15 85.1 182 37.4
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 8.3e-15 84.7 229 36.2
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 1.1e-14 84.3 225 32.9
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 2.4e-14 83.2 220 36.4
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 4.1e-14 82.4 217 37.8
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 4.1e-14 82.4 211 37.0
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 5.4e-14 82.0 177 38.4
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 7.1e-14 81.6 224 36.6
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 9.2e-14 81.3 204 35.3
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.2e-13 80.9 214 36.9
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 1.2e-13 80.9 226 36.3
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.2e-13 80.9 222 36.5
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.6e-13 80.5 212 36.8
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 1.6e-13 80.5 144 38.2
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 4.6e-13 79.0 188 35.1
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 4.6e-13 79.0 211 36.0
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 6.0e-13 78.6 69 60.9
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 7.8e-13 78.2 222 36.5
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 1.0e-12 77.8 198 40.9
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 1.0e-12 77.8 172 39.0
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.7e-12 77.0 208 35.1
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.7e-12 77.0 165 36.4
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 3.9e-12 75.9 193 35.8
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 3.3e-11 72.8 48 68.8
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 4.3e-11 72.4 163 40.5
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 4.3e-11 72.4 191 35.6
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 5.6e-11 72.0 91 47.3
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 7.3e-11 71.6 67 55.2
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 7.3e-11 71.6 193 34.7
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 1.6e-10 70.5 79 50.6
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 2.1e-10 70.1 70 54.3
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 6.2e-10 68.6 180 34.4
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 1.1e-09 67.8 214 31.3
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 1.1e-09 67.8 210 31.9
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 2.3e-09 66.6 173 35.8
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 6.8e-09 65.1 151 36.4
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 8.9e-09 64.7 87 49.4
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 4.4e-08 62.4 198 37.9
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 5.8e-08 62.0 220 32.3
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 5.8e-08 62.0 186 34.9
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 7.6e-08 61.6 231 32.0
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 9.9e-08 61.2 78 48.7
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 9.9e-08 61.2 74 47.3
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 6.4e-07 58.5 183 33.3
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 1.1e-06 57.8 193 34.2
Peaxi162Scf00784g00044 Petunia axillaris HOM05D004654 ORTHO05D005414 3.2e-06 56.2 79 44.3


User provided reference genes

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