Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 1.3e-91 339.7 169 100.0
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 1.2e-78 296.6 184 83.7
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 3.6e-78 295.0 171 87.1
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.4e-77 293.1 172 86.6
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.5e-76 288.9 174 84.5
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 3.3e-76 288.5 172 84.3
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.3e-75 286.6 172 84.3
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 2.8e-75 285.4 171 81.3
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.5e-73 279.6 172 83.7
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 3.4e-73 278.5 171 82.5
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.1e-71 273.5 170 81.2
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 2.1e-70 269.2 172 77.9
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 3.6e-70 268.5 170 78.8
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 6.1e-70 267.7 172 76.7
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 1.0e-69 266.9 169 79.3
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.4e-69 266.5 170 77.6
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.4e-69 266.5 172 77.3
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 1.4e-69 266.5 168 76.8
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 1.4e-69 266.5 179 74.3
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.3e-69 265.8 158 85.4
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 2.3e-69 265.8 173 75.1
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 2.3e-69 265.8 169 76.9
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 2.3e-69 265.8 173 76.9
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 2.3e-69 265.8 171 77.2
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 6.7e-69 264.2 176 75.6
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 6.7e-69 264.2 172 76.7
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 6.7e-69 264.2 169 78.7
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 1.1e-68 263.5 171 77.2
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 1.1e-68 263.5 171 75.4
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.5e-68 263.1 172 80.2
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 2.0e-68 262.7 179 73.7
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 2.0e-68 262.7 168 74.4
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 2.0e-68 262.7 168 75.0
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 3.3e-68 261.9 172 77.3
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 7.4e-68 260.8 173 75.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.3e-67 260.0 162 77.2
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.7e-67 259.6 172 75.6
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 2.2e-67 259.2 169 76.9
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 8.2e-67 257.3 176 73.9
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 8.2e-67 257.3 172 73.8
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.1e-66 256.9 171 73.7
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.4e-66 256.5 171 73.7
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 1.8e-66 256.1 161 78.9
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.8e-66 256.1 172 76.2
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 4.1e-66 255.0 167 74.3
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.1e-66 255.0 171 74.9
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.1e-66 255.0 171 74.9
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.1e-66 255.0 171 74.9
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 9.1e-66 253.8 194 68.6
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.2e-65 253.4 173 74.0
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.5e-65 253.1 168 73.8
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.5e-65 253.1 167 74.3
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.0e-65 252.7 170 74.7
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 3.5e-65 251.9 170 72.9
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 3.5e-65 251.9 170 72.4
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 3.5e-65 251.9 171 71.9
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 5.9e-65 251.1 169 71.0
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.9e-65 251.1 199 66.8
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.9e-65 251.1 199 66.8
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.9e-65 251.1 199 66.8
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 5.9e-65 251.1 171 73.1
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 1.3e-64 250.0 171 70.8
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.3e-64 250.0 171 72.5
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.3e-64 250.0 162 77.8
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 2.2e-64 249.2 170 71.8
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 2.2e-64 249.2 170 71.8
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 2.2e-64 249.2 161 76.4
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 3.8e-64 248.4 173 73.4
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 5.0e-64 248.1 170 70.0
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 5.0e-64 248.1 170 71.2
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 1.1e-63 246.9 171 70.8
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.4e-63 246.5 170 70.6
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.4e-63 246.5 170 70.6
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.4e-63 246.5 170 71.2
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.5e-63 245.7 170 70.0
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 2.5e-63 245.7 170 70.0
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 2.5e-63 245.7 170 70.0
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 3.2e-63 245.4 170 70.0
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 3.2e-63 245.4 171 69.6
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 5.5e-63 244.6 171 69.0
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 5.5e-63 244.6 167 73.1
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 5.5e-63 244.6 169 70.4
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 7.2e-63 244.2 166 73.5
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 1.2e-62 243.4 167 70.1
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.2e-62 243.4 169 70.4
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.6e-62 243.0 173 71.1
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.6e-62 243.0 168 71.4
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.1e-62 242.7 157 75.8
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 3.6e-62 241.9 168 71.4
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 6.1e-62 241.1 157 75.2
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 8.0e-62 240.7 159 72.3
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 8.8e-61 237.3 170 67.6
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 8.8e-61 237.3 170 67.6
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 1.5e-60 236.5 170 67.6
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.6e-60 235.7 170 68.8
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 2.6e-60 235.7 175 71.4
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 4.4e-60 235.0 170 67.6
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 1.7e-59 233.0 170 67.6
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.4e-58 229.9 163 68.7
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.4e-58 229.9 163 68.7
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.4e-58 229.9 163 68.7
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.4e-58 229.9 166 67.5
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 7.0e-58 227.6 162 67.9
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.2e-57 226.9 166 65.7
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.5e-57 225.3 137 81.0
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 7.7e-57 224.2 262 50.0
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 5.0e-56 221.5 206 56.3
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 6.5e-56 221.1 208 58.7
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 1.5e-55 219.9 225 53.3
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 2.5e-55 219.2 187 64.2
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.2e-55 218.4 208 58.2
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 2.1e-54 216.1 169 62.7
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 5.2e-53 211.5 142 72.5
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 4.8e-51 204.9 183 63.4
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 4.5e-49 198.4 172 61.0
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.6e-46 189.9 118 77.1
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 2.2e-43 179.5 109 78.0
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 8.3e-43 177.6 170 60.0
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 9.1e-42 174.1 166 54.8
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.1e-38 162.9 113 69.0
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 1.4e-37 160.2 110 70.0
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 6.3e-35 151.4 107 70.1
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.4e-34 150.2 119 63.0
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.8e-34 149.8 112 63.4
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 3.1e-34 149.1 103 72.8
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 5.4e-34 148.3 98 70.4
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 7.0e-34 147.9 140 49.3
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.2e-33 147.1 96 71.9
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 4.5e-33 145.2 149 44.3
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 2.3e-29 132.9 116 59.5
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.3e-29 132.9 105 60.0
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.1e-26 124.0 100 62.0
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 1.3e-24 117.1 72 76.4
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 1.3e-24 117.1 72 76.4
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.6e-22 110.2 98 59.2
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 2.8e-22 109.4 127 38.6
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 4.7e-22 108.6 61 88.5
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.8e-21 106.7 72 75.0
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.8e-21 106.7 106 43.4
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 1.2e-20 104.0 79 70.9
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.2e-20 104.0 93 57.0
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.3e-19 100.5 62 79.0
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 2.2e-19 99.8 104 41.3
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 8.3e-19 97.8 63 73.0
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 9.2e-18 94.4 60 75.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 2.1e-17 93.2 140 39.3
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 6.6e-16 88.2 92 45.7
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 1.9e-15 86.7 106 40.6
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 9.5e-15 84.3 104 51.9
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 4.0e-13 79.0 50 76.0
Phvul.001G073900 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.1e-06 56.6 36 77.8
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 2.8e-06 56.2 32 84.4


User provided reference genes

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