Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G008400 Prunus persica HOM05D003465 ORTHO05D004034 2.2e-70 268.9 134 100.0
MD10G1094900 Malus domestica HOM05D003465 ORTHO05D004034 8.6e-27 124.0 97 70.1
MD05G1081600 Malus domestica HOM05D003465 ORTHO05D004034 1.2e-25 120.2 97 69.1
FAN15G0414 Fragaria x ananassa HOM05D003465 ORTHO05D004034 1.3e-22 110.2 97 59.8
FAN20G2338 Fragaria x ananassa HOM05D003465 ORTHO05D004034 1.3e-22 110.2 97 59.8
FAN27G0960 Fragaria x ananassa HOM05D003465 ORTHO05D004034 1.3e-22 110.2 97 59.8
FvH4_2g05930 Fragaria vesca HOM05D003465 ORTHO05D004034 2.2e-22 109.4 97 58.8
GSVIVG01031736001 Vitis vinifera HOM05D003465 ORTHO05D004034 9.2e-21 104.0 81 66.7
Potri.009G101500 Populus trichocarpa HOM05D003465 ORTHO05D004034 6.6e-19 97.8 90 60.0
CANSAT25G3338 Cannabis sativa HOM05D003465 ORTHO05D004034 8.6e-19 97.4 87 58.6
CANSAT25G3355 Cannabis sativa HOM05D003465 ORTHO05D004034 8.6e-19 97.4 87 58.6
ClCG02G005960 Citrullus lanatus HOM05D003465 ORTHO05D004034 1.9e-18 96.3 79 55.7
CsaV3_3G018500 Cucumis sativus L. HOM05D003465 ORTHO05D004034 1.9e-18 96.3 87 57.5
RcHm_v2.0_Chr6g0257471 Rosa chinensis HOM05D003465 ORTHO05D004034 2.5e-18 95.9 102 54.9
ClCG05G010040 Citrullus lanatus HOM05D003465 ORTHO05D004034 4.3e-18 95.1 87 56.3
Sabra09G0077300 Salix brachista HOM05D003465 ORTHO05D004034 9.5e-18 94.0 90 57.8
CsaV3_7G008560 Cucumis sativus L. HOM05D003465 ORTHO05D004034 1.6e-17 93.2 87 51.7
QL11p035314 Quercus lobata HOM05D003465 ORTHO05D004034 2.8e-17 92.4 80 62.5
MELO3C019516.2 Cucumis melo HOM05D003465 ORTHO05D004034 3.6e-17 92.0 87 55.2
PGR142G0601 Punica granatum HOM05D003465 ORTHO05D004034 4.7e-17 91.7 90 57.8
Eucgr.I01147 Eucalyptus grandis HOM05D003465 ORTHO05D004034 8.1e-17 90.9 89 55.1
Sed0016548 Sechium edule HOM05D003465 ORTHO05D004034 1.1e-16 90.5 88 52.3
Cfa004534 Carpinus fangiana HOM05D003465 ORTHO05D004034 1.4e-16 90.1 80 60.0
CiPaw.05G007600 Carya illinoinensis HOM05D003465 ORTHO05D004034 1.4e-16 90.1 87 56.3
MELO3C014990.2 Cucumis melo HOM05D003465 ORTHO05D004034 1.4e-16 90.1 87 54.0
VMungo0251G1706 Vigna mungo HOM05D003465 ORTHO05D004034 1.4e-16 90.1 87 59.8
Haze_10093 Corylus avellana HOM05D003465 ORTHO05D004034 1.8e-16 89.7 80 58.8
Dinv42161 Davidia involucrata HOM05D003465 ORTHO05D004034 1.8e-16 89.7 88 56.8
Dinv15715 Davidia involucrata HOM05D003465 ORTHO05D004034 2.3e-16 89.4 97 50.5
TWI31G0519 Tripterygium wilfordii HOM05D003465 ORTHO05D004034 3.1e-16 89.0 87 52.9
Sed0008599 Sechium edule HOM05D003465 ORTHO05D004034 4.0e-16 88.6 88 51.1
TWI79G0501 Tripterygium wilfordii HOM05D003465 ORTHO05D004034 5.2e-16 88.2 87 51.7
Glyma.07G212900 Glycine max HOM05D003465 ORTHO05D004034 6.8e-16 87.8 93 53.8
Phvul.003G292000 Phaseolus vulgaris HOM05D003465 ORTHO05D004034 1.5e-15 86.7 88 55.7
TPR.G25433 Trifolium pratense HOM05D003465 ORTHO05D004034 2.0e-15 86.3 114 52.6
Nn5g30308 Nelumbo nucifera HOM05D003465 ORTHO05D004034 5.8e-15 84.7 109 47.7
Cpa.g.sc62.7 Carica papaya HOM05D003465 ORTHO05D004034 7.6e-15 84.3 88 52.3
Lj4g0026387 Lotus japonicus HOM05D003465 ORTHO05D004034 7.6e-15 84.3 87 58.6
DCAR_022021 Daucus carota HOM05D003465 ORTHO05D004034 9.9e-15 84.0 114 44.7
Lalb_Chr16g0384751 Lupinus albus HOM05D003465 ORTHO05D004034 9.9e-15 84.0 89 51.7
Ca_18690_v3 Cicer arietinum L. HOM05D003465 ORTHO05D004034 1.3e-14 83.6 89 57.3
Lalb_Chr09g0328341 Lupinus albus HOM05D003465 ORTHO05D004034 1.7e-14 83.2 117 43.6
Sopen01g050340 Solanum pennellii HOM05D003465 ORTHO05D004034 4.9e-14 81.6 91 49.5
EL10Ac9g21840 Beta vulgaris HOM05D003465 ORTHO05D004034 6.4e-14 81.3 92 51.1
Glyma.02G131900 Glycine max HOM05D003465 ORTHO05D004034 6.4e-14 81.3 91 54.9
Nn1g04851 Nelumbo nucifera HOM05D003465 ORTHO05D004034 6.4e-14 81.3 87 48.3
Solyc01g108110.4 Solanum lycopersicum HOM05D003465 ORTHO05D004034 6.4e-14 81.3 91 49.5
PGSC0003DMG400025789 Solanum tuberosum HOM05D003465 ORTHO05D004034 6.4e-14 81.3 91 49.5
Duzib052G0281 Durio zibethinus HOM05D003465 ORTHO05D004034 8.4e-14 80.9 110 45.5
Gohir.A12G024000 Gossypium hirsutum HOM05D003465 ORTHO05D004034 8.4e-14 80.9 88 52.3
Gohir.D13G039450 Gossypium hirsutum HOM05D003465 ORTHO05D004034 1.4e-13 80.1 87 50.6
Gorai.013G044300 Gossypium raimondii HOM05D003465 ORTHO05D004034 1.4e-13 80.1 87 50.6
Hund00338 Selenicereus undatus HOM05D003465 ORTHO05D004034 1.4e-13 80.1 80 53.8
CSS0040219 Camellia sinensis var. sinensis HOM05D003465 ORTHO05D004034 1.9e-13 79.7 88 55.7
AUR62011449 Chenopodium quinoa HOM05D003465 ORTHO05D004034 1.9e-13 79.7 87 50.6
Hma1.2p1_0474F.1_g160420 Hydrangea macrophylla HOM05D003465 ORTHO05D004034 1.9e-13 79.7 86 52.3
Medtr4g086010 Medicago truncatula HOM05D003465 ORTHO05D004034 3.2e-13 79.0 119 47.9
Gohir.A13G040700 Gossypium hirsutum HOM05D003465 ORTHO05D004034 4.1e-13 78.6 87 49.4
Peaxi162Scf00003g02335 Petunia axillaris HOM05D003465 ORTHO05D004034 4.1e-13 78.6 95 46.3
Cc02_g18830 Coffea canephora HOM05D003465 ORTHO05D004034 7.1e-13 77.8 82 51.2
Nitab4.5_0007480g0040 Nicotiana tabacum HOM05D003465 ORTHO05D004034 7.1e-13 77.8 92 48.9
MELO3C019684.2 Cucumis melo HOM05D003465 ORTHO05D004034 9.2e-13 77.4 80 52.5
Ciclev10028212m.g Citrus clementina HOM05D003465 ORTHO05D004034 1.2e-12 77.0 87 50.6
Gohir.D12G024600 Gossypium hirsutum HOM05D003465 ORTHO05D004034 1.2e-12 77.0 88 50.0
Gorai.008G024900 Gossypium raimondii HOM05D003465 ORTHO05D004034 1.2e-12 77.0 88 50.0
Thecc.02G101300 Theobroma cacao HOM05D003465 ORTHO05D004034 1.6e-12 76.6 88 48.9
CAN.G1707.1 Capsicum annuum HOM05D003465 ORTHO05D004034 2.1e-12 76.3 86 50.0
PGSC0003DMG401006223 Solanum tuberosum HOM05D003465 ORTHO05D004034 2.1e-12 76.3 95 44.2
TAR381G0440 Trochodendron aralioides HOM05D003465 ORTHO05D004034 2.1e-12 76.3 89 50.6
AUR62016610 Chenopodium quinoa HOM05D003465 ORTHO05D004034 3.5e-12 75.5 85 49.4
Nitab4.5_0002543g0080 Nicotiana tabacum HOM05D003465 ORTHO05D004034 3.5e-12 75.5 92 44.6
Lsat_1_v5_gn_5_112540 Lactuca sativa HOM05D003465 ORTHO05D004034 7.8e-12 74.3 95 47.4
Psat7g125480 Pisum sativum HOM05D003465 ORTHO05D004034 1.0e-11 73.9 89 52.8
Lalb_Chr05g0219201 Lupinus albus HOM05D003465 ORTHO05D004034 1.3e-11 73.6 91 49.5
Sc18g0004110 Simmondsia chinensis HOM05D003465 ORTHO05D004034 1.3e-11 73.6 90 48.9
TAR625G0342 Trochodendron aralioides HOM05D003465 ORTHO05D004034 1.3e-11 73.6 95 45.3
Hund06174 Selenicereus undatus HOM05D003465 ORTHO05D004034 3.0e-11 72.4 85 48.2
Sopen10g021410 Solanum pennellii HOM05D003465 ORTHO05D004034 3.0e-11 72.4 96 45.8
Lsat_1_v5_gn_7_86701 Lactuca sativa HOM05D003465 ORTHO05D004034 6.6e-11 71.2 96 41.7
Lj9C358T1 Lonicera japonica HOM05D003465 ORTHO05D004034 6.6e-11 71.2 76 52.6
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 1.1e-10 70.5 79 48.1
arahy.Tifrunner.gnm1.ann1.5RT47R Arachis hypogaea HOM05D003465 ORTHO05D004034 1.5e-10 70.1 89 49.4
arahy.Tifrunner.gnm1.ann1.PPSU1J Arachis hypogaea HOM05D003465 ORTHO05D004034 1.5e-10 70.1 89 49.4
Thhalv10011402m.g Eutrema salsugineum HOM05D003465 ORTHO05D004034 1.5e-10 70.1 80 51.2
MBI03_g13465_MAGBIO Magnolia biondii HOM05D003465 ORTHO05D004034 1.5e-10 70.1 90 44.4
Gohir.A01G007100 Gossypium hirsutum HOM05D003465 ORTHO05D004034 2.5e-10 69.3 88 44.3
Gorai.002G008200 Gossypium raimondii HOM05D003465 ORTHO05D004034 2.5e-10 69.3 88 44.3
Actinidia27958 Actinidia chinensis HOM05D003465 ORTHO05D004034 5.6e-10 68.2 78 50.0
HanXRQChr04g0128181 Helianthus annuus HOM05D003465 ORTHO05D004034 5.6e-10 68.2 94 42.6
SalBow6G3816 Salvia bowleyana HOM05D003465 ORTHO05D004034 5.6e-10 68.2 85 47.1
CAN.G1041.31 Capsicum annuum HOM05D003465 ORTHO05D004034 7.3e-10 67.8 90 46.7
Gohir.D01G007200 Gossypium hirsutum HOM05D003465 ORTHO05D004034 7.3e-10 67.8 88 43.2
Nitab4.5_0003503g0030 Nicotiana tabacum HOM05D003465 ORTHO05D004034 7.3e-10 67.8 96 45.8
ATR0009G025 Amborella trichopoda HOM05D003465 ORTHO05D004034 9.6e-10 67.4 86 44.2
CDE08G1667 Ceratophyllum demersum HOM05D003465 ORTHO05D004034 9.6e-10 67.4 75 49.3
Sp1g36600 Schrenkiella parvula HOM05D003465 ORTHO05D004034 9.6e-10 67.4 80 48.8
BcaB07g33651 Brassica carinata HOM05D003465 ORTHO05D004034 1.2e-09 67.0 106 45.3
A06p03720 Brassica napus HOM05D003465 ORTHO05D004034 1.6e-09 66.6 80 47.5
BraA06t23577Z Brassica rapa HOM05D003465 ORTHO05D004034 1.6e-09 66.6 80 47.5
AL1G57150 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 2.1e-09 66.2 81 49.4
AT1G49710 Arabidopsis thaliana HOM05D003465 ORTHO05D004034 2.8e-09 65.9 82 48.8
Rhsim05G0084700 Rhododendron simsii HOM05D003465 ORTHO05D004034 2.8e-09 65.9 86 47.7
Aqoxy6G01316 Aquilegia oxysepala HOM05D003465 ORTHO05D004034 3.6e-09 65.5 112 36.6
Aa31LG10G4340 Aethionema arabicum HOM05D003465 ORTHO05D004034 4.7e-09 65.1 105 43.8
CDE06G1279 Ceratophyllum demersum HOM05D003465 ORTHO05D004034 6.2e-09 64.7 78 46.2
unitig_744.g24234 Utricularia gibba HOM05D003465 ORTHO05D004034 6.2e-09 64.7 80 45.0
SGA_v2.0_scaffold90G27641 Striga asiatica HOM05D003465 ORTHO05D004034 8.1e-09 64.3 93 46.2
Carub.0001s3892 Capsella rubella HOM05D003465 ORTHO05D004034 1.8e-08 63.2 81 48.1
COL.COLO4_32743 Corchorus olitorius HOM05D003465 ORTHO05D004034 1.8e-08 63.2 84 44.0
vmacro19503 Vaccinium macrocarpon HOM05D003465 ORTHO05D004034 1.8e-08 63.2 89 47.2
Lj5A209T84 Lonicera japonica HOM05D003465 ORTHO05D004034 3.1e-08 62.4 100 40.0
THA.LOC104798796 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 4.0e-08 62.0 78 47.4
A08p03730 Brassica napus HOM05D003465 ORTHO05D004034 5.2e-08 61.6 78 46.2
THA.LOC104803455 Tarenaya hassleriana HOM05D003465 ORTHO05D004034 6.8e-08 61.2 78 48.7
BcaB04g17304 Brassica carinata HOM05D003465 ORTHO05D004034 8.9e-08 60.8 78 47.4
BcaC08g43160 Brassica carinata HOM05D003465 ORTHO05D004034 8.9e-08 60.8 83 45.8
C06p04480 Brassica napus HOM05D003465 ORTHO05D004034 8.9e-08 60.8 83 45.8
BolC6t35578H Brassica oleracea HOM05D003465 ORTHO05D004034 8.9e-08 60.8 83 45.8
Os08g0472600 Oryza sativa ssp. japonica HOM05D003465 ORTHO05D004034 8.9e-08 60.8 98 37.8
SHI05356 Sapria himalayana HOM05D003465 ORTHO05D004034 8.9e-08 60.8 94 40.4
Sp3g17360 Schrenkiella parvula HOM05D003465 ORTHO05D004034 8.9e-08 60.8 80 43.8
Zm00001eb176710 Zea mays HOM05D003465 ORTHO05D004034 8.9e-08 60.8 86 40.7
BcaC07g37019 Brassica carinata HOM05D003465 ORTHO05D004034 1.5e-07 60.1 76 46.1
C08p03870 Brassica napus HOM05D003465 ORTHO05D004034 1.5e-07 60.1 76 46.1
BolC8t47184H Brassica oleracea HOM05D003465 ORTHO05D004034 1.5e-07 60.1 76 46.1
BraA08t32401Z Brassica rapa HOM05D003465 ORTHO05D004034 4.4e-07 58.5 76 46.1
CSS0046899 Camellia sinensis var. sinensis HOM05D003465 ORTHO05D004034 4.4e-07 58.5 77 44.2
A05p30320 Brassica napus HOM05D003465 ORTHO05D004034 7.6e-07 57.8 80 40.0
BraA05t21870Z Brassica rapa HOM05D003465 ORTHO05D004034 7.6e-07 57.8 80 40.0
Carub.0003s1911 Capsella rubella HOM05D003465 ORTHO05D004034 9.9e-07 57.4 76 48.7
AT3G19280 Arabidopsis thaliana HOM05D003465 ORTHO05D004034 1.7e-06 56.6 80 46.2
AL3G32680 Arabidopsis lyrata HOM05D003465 ORTHO05D004034 2.9e-06 55.8 80 45.0


User provided reference genes

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