Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G008300 Prunus persica HOM05D005852 ORTHO05D006688 3.8e-263 911.0 465 100.0
MD17G1278200 Malus domestica HOM05D005852 ORTHO05D006688 4.1e-233 811.2 465 88.4
RcHm_v2.0_Chr3g0487181 Rosa chinensis HOM05D005852 ORTHO05D006688 1.5e-227 792.7 465 86.7
MD09G1285600 Malus domestica HOM05D005852 ORTHO05D006688 9.7e-227 790.0 467 86.3
FAN28G0451 Fragaria x ananassa HOM05D005852 ORTHO05D006688 2.3e-220 768.8 465 84.7
FAN23G1709 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.0e-220 768.5 465 84.7
FAN26G2795 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.0e-220 768.5 465 84.5
FvH4_1g26940 Fragaria vesca HOM05D005852 ORTHO05D006688 6.7e-220 767.3 465 84.5
FAN19G1535 Fragaria x ananassa HOM05D005852 ORTHO05D006688 1.1e-219 766.5 465 84.5
FAN28G0588 Fragaria x ananassa HOM05D005852 ORTHO05D006688 3.3e-219 765.0 465 84.1
GSVIVG01028150001 Vitis vinifera HOM05D005852 ORTHO05D006688 4.5e-200 701.4 466 77.0
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 7.7e-200 700.7 470 77.2
Thecc.01G317000 Theobroma cacao HOM05D005852 ORTHO05D006688 1.9e-198 696.0 465 75.7
COL.COLO4_23201 Corchorus olitorius HOM05D005852 ORTHO05D006688 2.5e-198 695.7 466 76.2
Duzib138G0780 Durio zibethinus HOM05D005852 ORTHO05D006688 8.8e-196 687.2 467 75.4
Ciclev10023332m.g Citrus clementina HOM05D005852 ORTHO05D006688 3.4e-195 685.3 465 75.1
Manes.01G230200 Manihot esculenta HOM05D005852 ORTHO05D006688 2.8e-194 682.2 468 76.1
Atru.chr5.963 Acer truncatum HOM05D005852 ORTHO05D006688 9.1e-193 677.2 465 75.7
Gohir.D07G133700 Gossypium hirsutum HOM05D005852 ORTHO05D006688 6.6e-191 671.0 465 73.8
Gorai.001G145000 Gossypium raimondii HOM05D005852 ORTHO05D006688 5.5e-190 667.9 467 73.7
Haze_05075 Corylus avellana HOM05D005852 ORTHO05D006688 2.0e-187 659.4 496 70.8
CSS0024762 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 7.5e-187 657.5 469 74.2
Dinv33136 Davidia involucrata HOM05D005852 ORTHO05D006688 6.3e-186 654.4 429 78.8
Phvul.001G214600 Phaseolus vulgaris HOM05D005852 ORTHO05D006688 5.4e-185 651.4 466 73.0
Duzib133G0199 Durio zibethinus HOM05D005852 ORTHO05D006688 1.6e-184 649.8 467 72.4
Hma1.2p1_0408F.1_g146510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 3.3e-182 642.1 466 73.2
Actinidia17918 Actinidia chinensis HOM05D005852 ORTHO05D006688 2.1e-181 639.4 467 72.4
arahy.Tifrunner.gnm1.ann1.BXR415 Arachis hypogaea HOM05D005852 ORTHO05D006688 3.6e-181 638.6 466 71.7
CsaV3_3G026570 Cucumis sativus L. HOM05D005852 ORTHO05D006688 5.2e-180 634.8 466 70.2
Potri.002G192800 Populus trichocarpa HOM05D005852 ORTHO05D006688 8.9e-180 634.0 465 71.6
VMungo1383G3312 Vigna mungo HOM05D005852 ORTHO05D006688 4.4e-179 631.7 469 71.9
Glyma.03G221000 Glycine max HOM05D005852 ORTHO05D006688 1.7e-178 629.8 468 71.6
Glyma.19G218000 Glycine max HOM05D005852 ORTHO05D006688 1.7e-178 629.8 468 71.4
TAR362G0299 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.7e-178 629.8 465 69.7
TWI75G1100 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 6.4e-178 627.9 467 69.8
Hma1.2p1_0486F.1_g163510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 1.1e-177 627.1 466 71.0
Lj1g0015719 Lotus japonicus HOM05D005852 ORTHO05D006688 9.2e-177 624.0 466 69.5
arahy.Tifrunner.gnm1.ann1.8ZIL5S Arachis hypogaea HOM05D005852 ORTHO05D006688 2.0e-176 622.9 492 67.7
Eucgr.K03554 Eucalyptus grandis HOM05D005852 ORTHO05D006688 2.7e-176 622.5 465 69.0
Potri.014G118100 Populus trichocarpa HOM05D005852 ORTHO05D006688 1.0e-175 620.5 466 71.0
Lalb_Chr18g0046571 Lupinus albus HOM05D005852 ORTHO05D006688 2.3e-175 619.4 469 70.1
ClCG10G011590 Citrullus lanatus HOM05D005852 ORTHO05D006688 1.5e-174 616.7 487 66.9
TWI36G1268 Tripterygium wilfordii HOM05D005852 ORTHO05D006688 4.0e-172 608.6 467 69.6
Cc08_g12410 Coffea canephora HOM05D005852 ORTHO05D006688 7.5e-171 604.4 468 67.9
Sopen08g027090 Solanum pennellii HOM05D005852 ORTHO05D006688 2.4e-169 599.4 468 67.5
Rhsim13G0003100 Rhododendron simsii HOM05D005852 ORTHO05D006688 4.1e-169 598.6 490 66.7
PGSC0003DMG400004761 Solanum tuberosum HOM05D005852 ORTHO05D006688 4.6e-168 595.1 468 67.3
PGR044G1849 Punica granatum HOM05D005852 ORTHO05D006688 5.1e-167 591.7 466 67.4
Solyc08g078610.4 Solanum lycopersicum HOM05D005852 ORTHO05D006688 9.5e-166 587.4 470 66.6
DCAR_002882 Daucus carota HOM05D005852 ORTHO05D006688 1.2e-165 587.0 466 65.5
vmacro02386 Vaccinium macrocarpon HOM05D005852 ORTHO05D006688 4.0e-164 582.0 489 64.8
CAN.G1058.28 Capsicum annuum HOM05D005852 ORTHO05D006688 8.9e-164 580.9 474 66.5
Nitab4.5_0000312g0040 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.9e-162 575.9 522 60.7
CSS0026378 Camellia sinensis var. sinensis HOM05D005852 ORTHO05D006688 1.4e-161 573.5 532 61.7
TPR.G4094 Trifolium pratense HOM05D005852 ORTHO05D006688 5.4e-161 571.6 500 62.0
Peaxi162Scf00174g00140 Petunia axillaris HOM05D005852 ORTHO05D006688 7.1e-161 571.2 509 61.5
CiPaw.08G087500 Carya illinoinensis HOM05D005852 ORTHO05D006688 7.8e-160 567.8 469 65.9
CANSAT25G1874 Cannabis sativa HOM05D005852 ORTHO05D006688 6.6e-159 564.7 508 63.0
Nitab4.5_0014313g0030 Nicotiana tabacum HOM05D005852 ORTHO05D006688 2.5e-158 562.8 474 63.5
Aqoxy5G02690 Aquilegia oxysepala HOM05D005852 ORTHO05D006688 1.2e-157 560.5 480 63.8
Ca_09223_v3 Cicer arietinum L. HOM05D005852 ORTHO05D006688 1.6e-157 560.1 504 60.9
MSTRG.12100 Avicennia marina HOM05D005852 ORTHO05D006688 3.6e-157 558.9 479 63.7
Sabra02G0163100 Salix brachista HOM05D005852 ORTHO05D006688 1.5e-155 553.5 497 62.8
Oeu002340.2 Olea europaea HOM05D005852 ORTHO05D006688 1.6e-149 533.5 435 67.4
Sc05g0000300 Simmondsia chinensis HOM05D005852 ORTHO05D006688 2.4e-148 529.6 467 61.9
Oeu040211.2 Olea europaea HOM05D005852 ORTHO05D006688 1.3e-146 523.9 491 60.7
Psat3g018920 Pisum sativum HOM05D005852 ORTHO05D006688 1.3e-146 523.9 477 60.0
MBI18_g35540_MAGBIO Magnolia biondii HOM05D005852 ORTHO05D006688 4.2e-145 518.8 502 56.6
THA.LOC104802145 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 4.2e-145 518.8 452 61.9
Migut.A00953 Erythranthe guttata HOM05D005852 ORTHO05D006688 7.3e-142 508.1 480 60.8
EL10Ac1g01717 Beta vulgaris HOM05D005852 ORTHO05D006688 2.1e-141 506.5 516 56.4
Sp5g01060 Schrenkiella parvula HOM05D005852 ORTHO05D006688 4.0e-140 502.3 477 60.8
Hund17504 Selenicereus undatus HOM05D005852 ORTHO05D006688 6.9e-140 501.5 490 58.2
AL2G23460 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 9.0e-140 501.1 478 61.3
AL5G45080 Arabidopsis lyrata HOM05D005852 ORTHO05D006688 5.8e-139 498.4 478 61.1
PSO761G0671 Papaver somniferum HOM05D005852 ORTHO05D006688 2.2e-138 496.5 545 56.0
MSTRG.25523 Avicennia marina HOM05D005852 ORTHO05D006688 2.9e-138 496.1 478 58.6
THA.LOC104817449 Tarenaya hassleriana HOM05D005852 ORTHO05D006688 3.8e-138 495.7 464 59.7
ATR0693G434 Amborella trichopoda HOM05D005852 ORTHO05D006688 1.4e-137 493.8 482 57.9
TAR365G0405 Trochodendron aralioides HOM05D005852 ORTHO05D006688 2.4e-137 493.0 419 65.2
Lj1A15T56 Lonicera japonica HOM05D005852 ORTHO05D006688 3.2e-137 492.7 480 61.0
Carub.0005s2904 Capsella rubella HOM05D005852 ORTHO05D006688 4.2e-137 492.3 477 59.5
AT3G62330 Arabidopsis thaliana HOM05D005852 ORTHO05D006688 7.1e-137 491.5 479 60.5
ECA247G2785 Erigeron canadensis HOM05D005852 ORTHO05D006688 3.5e-136 489.2 468 57.9
PSO210G2075 Papaver somniferum HOM05D005852 ORTHO05D006688 3.5e-136 489.2 545 55.2
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 1.3e-135 487.3 486 59.1
CARHR172660 Cardamine hirsuta HOM05D005852 ORTHO05D006688 6.7e-135 485.0 480 59.8
Cpa.g.sc18.85 Carica papaya HOM05D005852 ORTHO05D006688 8.7e-135 484.6 368 70.7
Sed0012344 Sechium edule HOM05D005852 ORTHO05D006688 3.3e-134 482.6 351 71.2
MELO3C012930.2 Cucumis melo HOM05D005852 ORTHO05D006688 9.6e-134 481.1 351 70.4
SHI33189 Sapria himalayana HOM05D005852 ORTHO05D006688 2.8e-133 479.6 534 52.8
A09p54330 Brassica napus HOM05D005852 ORTHO05D006688 1.7e-130 470.3 494 55.9
BolC8t51298H Brassica oleracea HOM05D005852 ORTHO05D006688 4.2e-129 465.7 487 56.1
Aa31LG10G16270 Aethionema arabicum HOM05D005852 ORTHO05D006688 8.7e-127 458.0 556 49.8
Ah.05g168400 Amaranthus hybridus HOM05D005852 ORTHO05D006688 1.1e-126 457.6 556 51.6
Lsat_1_v5_gn_8_166621 Lactuca sativa HOM05D005852 ORTHO05D006688 4.3e-126 455.7 480 59.6
C08p37210 Brassica napus HOM05D005852 ORTHO05D006688 5.7e-126 455.3 487 55.0
BraA09t40845Z Brassica rapa HOM05D005852 ORTHO05D006688 5.7e-126 455.3 511 53.4
SGA_v2.0_scaffold146G36149 Striga asiatica HOM05D005852 ORTHO05D006688 1.9e-121 440.3 440 58.6
HanXRQChr10g0284731 Helianthus annuus HOM05D005852 ORTHO05D006688 5.5e-121 438.7 473 54.1
Gohir.A07G129400 Gossypium hirsutum HOM05D005852 ORTHO05D006688 2.1e-120 436.8 317 71.0
CDE02G4238 Ceratophyllum demersum HOM05D005852 ORTHO05D006688 6.7e-119 431.8 487 54.8
AUR62034930 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.5e-118 430.6 514 49.4
AUR62022309 Chenopodium quinoa HOM05D005852 ORTHO05D006688 9.7e-118 427.9 518 49.0
TAR633G0114 Trochodendron aralioides HOM05D005852 ORTHO05D006688 1.3e-114 417.5 309 71.8
unitig_21.g20328 Utricularia gibba HOM05D005852 ORTHO05D006688 4.3e-110 402.5 435 53.8
CiPaw.07G119700 Carya illinoinensis HOM05D005852 ORTHO05D006688 3.8e-98 362.8 258 76.4
HPP92_012784 Vanilla planifolia HOM05D005852 ORTHO05D006688 8.0e-80 302.0 355 48.2
Hma1.2p1_0055F.1_g031510 Hydrangea macrophylla HOM05D005852 ORTHO05D006688 5.9e-75 285.8 215 67.0
C02p35770 Brassica napus HOM05D005852 ORTHO05D006688 8.0e-72 275.4 196 71.9
C02p58000 Brassica napus HOM05D005852 ORTHO05D006688 1.2e-70 271.6 196 70.9
Nn3g21757 Nelumbo nucifera HOM05D005852 ORTHO05D006688 3.7e-69 266.5 174 74.1
BolC2t11869H Brassica oleracea HOM05D005852 ORTHO05D006688 9.2e-68 261.9 195 69.7
Zm00001eb333730 Zea mays HOM05D005852 ORTHO05D006688 4.6e-67 259.6 269 55.0
Os01g0252900 Oryza sativa ssp. japonica HOM05D005852 ORTHO05D006688 1.7e-66 257.7 254 57.9
SEGI_21105 Sequoiadendron giganteum HOM05D005852 ORTHO05D006688 5.2e-63 246.1 490 38.2
AUR62032106 Chenopodium quinoa HOM05D005852 ORTHO05D006688 1.4e-52 211.5 366 39.3
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 4.6e-51 206.5 530 34.2
Nn4g25538 Nelumbo nucifera HOM05D005852 ORTHO05D006688 4.6e-51 206.5 465 32.7
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 1.5e-46 191.4 426 38.7
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 1.4e-44 184.9 461 34.3
CDE08G0400 Ceratophyllum demersum HOM05D004749 ORTHO05D005995 1.4e-36 158.3 180 49.4
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 4.2e-36 156.8 467 33.4
BcaNung00812 Brassica carinata HOM05D005852 ORTHO05D006688 1.6e-35 154.8 105 74.3
Pp3c1_21140 Physcomitrium patens HOM05D005852 ORTHO05D006688 3.3e-33 147.1 429 33.6
SGA_v2.0_scaffold120G32887 Striga asiatica HOM05D005852 ORTHO05D006688 9.6e-33 145.6 164 52.4
Actinidia20978 Actinidia chinensis HOM05D005852 ORTHO05D006688 1.1e-31 142.1 136 55.1
Pp3c2_16330 Physcomitrium patens HOM05D005852 ORTHO05D006688 9.0e-31 139.0 498 29.7
Nn3g21758 Nelumbo nucifera HOM05D005852 ORTHO05D006688 5.1e-26 123.2 114 51.8
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 3.1e-23 114.0 455 27.9
BolC5t33669H Brassica oleracea HOM05D005852 ORTHO05D006688 2.1e-19 101.3 81 65.4
Lsat_1_v5_gn_3_89981 Lactuca sativa HOM05D005852 ORTHO05D006688 7.9e-11 72.8 41 80.5
HPP92_012783 Vanilla planifolia HOM05D005852 ORTHO05D006688 8.2e-08 62.8 91 48.4
C06p28210 Brassica napus HOM05D005852 ORTHO05D041612 1.2e-06 58.9 59 54.2
BolC6t37987H Brassica oleracea HOM05D005852 ORTHO05D041612 1.2e-06 58.9 59 54.2
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.5e-06 58.5 156 30.8


User provided reference genes

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