Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 6.6e-125 450.7 220 100.0
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 6.2e-107 391.0 223 87.0
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 2.7e-102 375.6 220 84.5
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.4e-98 363.2 220 82.3
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.3e-96 356.7 242 75.6
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 9.6e-92 340.5 273 66.3
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.2e-88 329.3 274 66.1
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 1.3e-85 320.1 188 83.0
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 3.7e-83 312.0 220 72.3
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.4e-82 310.1 189 81.0
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 4.0e-82 308.5 194 77.8
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 6.9e-82 307.8 188 78.7
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 1.2e-81 307.0 184 77.2
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.5e-81 306.6 215 72.1
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 2.6e-81 305.8 213 71.4
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 4.5e-81 305.1 184 78.3
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.3e-80 303.5 187 79.1
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 2.2e-80 302.8 187 79.1
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 3.2e-79 298.9 185 79.5
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.2e-79 298.9 169 82.2
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 4.2e-79 298.5 200 74.0
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.6e-78 296.6 228 64.9
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 6.0e-78 294.7 161 83.9
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 7.9e-78 294.3 176 79.0
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.0e-77 293.9 226 69.9
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 1.8e-77 293.1 216 70.4
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 2.3e-77 292.7 170 80.6
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 3.0e-77 292.4 222 69.8
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 5.1e-77 291.6 220 68.2
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.9e-76 289.7 212 69.3
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.5e-76 289.3 222 69.4
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 3.3e-76 288.9 173 81.5
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 7.4e-76 287.7 156 86.5
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 9.6e-76 287.3 193 73.6
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 3.7e-75 285.4 179 74.3
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 4.8e-75 285.0 156 83.3
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.8e-74 283.1 188 71.8
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 2.4e-74 282.7 156 82.7
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 2.4e-74 282.7 191 73.8
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 4.1e-74 282.0 218 65.6
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 4.1e-74 282.0 156 82.7
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 5.3e-74 281.6 224 65.2
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 5.3e-74 281.6 198 70.2
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.5e-73 280.0 217 65.4
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.6e-73 279.3 217 65.4
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.6e-73 279.3 221 67.0
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.5e-73 278.5 217 65.0
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 7.6e-73 277.7 168 78.0
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.3e-72 276.9 156 81.4
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.3e-72 276.9 151 82.8
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 3.8e-72 275.4 223 64.1
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 5.0e-72 275.0 223 64.1
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 1.4e-71 273.5 217 64.5
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.9e-71 273.1 160 86.2
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 3.2e-71 272.3 186 69.4
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 4.2e-71 271.9 149 86.6
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 5.5e-71 271.6 145 84.8
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 5.5e-71 271.6 165 75.8
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 7.2e-71 271.2 168 76.8
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.2e-70 270.4 165 75.8
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.2e-70 270.4 227 63.0
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 4.6e-70 268.5 165 81.2
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 4.6e-70 268.5 234 61.5
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 4.6e-70 268.5 157 79.0
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 1.5e-68 263.5 142 85.2
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.5e-68 263.5 181 70.7
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 1.5e-68 263.5 143 85.3
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 1.3e-67 260.4 204 67.6
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.6e-67 260.0 205 62.4
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.6e-67 260.0 162 71.0
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 6.3e-67 258.1 150 76.7
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-66 256.5 205 61.5
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.8e-66 256.5 180 67.8
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.1e-66 255.4 208 62.0
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 5.3e-66 255.0 176 65.9
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 9.0e-66 254.2 206 61.7
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 9.0e-66 254.2 151 74.8
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.2e-65 253.8 198 68.2
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 2.0e-65 253.1 155 78.1
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 3.4e-65 252.3 145 82.1
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 5.9e-65 251.5 204 60.8
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.0e-64 250.8 236 57.6
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.0e-64 250.8 152 77.0
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 3.8e-64 248.8 216 58.3
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.9e-63 246.5 140 77.9
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.2e-62 243.8 209 56.5
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 1.6e-62 243.4 201 60.7
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 2.1e-62 243.0 175 68.6
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 7.9e-62 241.1 222 61.3
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 1.4e-61 240.4 206 59.7
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 3.9e-61 238.8 197 64.5
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 1.1e-60 237.3 131 83.2
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 7.4e-60 234.6 244 52.0
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 8.2e-59 231.1 168 60.7
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 8.2e-59 231.1 212 56.1
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 1.4e-58 230.3 216 57.9
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 2.4e-58 229.6 209 57.4
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.4e-58 229.6 204 56.4
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 1.2e-57 227.3 209 57.4
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 4.5e-57 225.3 160 65.0
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.5e-57 225.3 183 57.9
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.5e-57 225.3 183 57.9
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.0e-56 224.2 165 65.5
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.3e-56 223.8 187 56.7
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 2.2e-56 223.0 178 62.9
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 2.9e-56 222.6 205 57.6
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 2.9e-56 222.6 148 65.5
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.4e-55 220.3 218 52.3
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 6.1e-54 214.9 154 61.0
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.9e-53 212.2 128 77.3
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 2.6e-52 209.5 138 68.1
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 2.6e-52 209.5 158 59.5
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 4.4e-52 208.8 158 60.8
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 4.4e-52 208.8 158 60.1
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.2e-51 206.5 189 54.0
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 4.8e-51 205.3 148 60.8
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 1.1e-50 204.1 195 52.3
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.1e-50 204.1 214 54.2
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.6e-49 199.5 145 58.6
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.5e-49 199.1 145 58.6
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 3.8e-48 195.7 109 79.8
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 6.5e-48 194.9 222 48.2
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 8.5e-48 194.5 158 56.3
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.1e-47 194.1 219 47.5
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.5e-47 193.7 185 50.8
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 2.5e-47 193.0 217 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 7.2e-47 191.4 143 57.3
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 9.4e-47 191.0 226 45.1
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 9.4e-47 191.0 226 45.1
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.2e-46 190.7 233 48.9
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 2.1e-46 189.9 226 44.7
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 2.1e-46 189.9 226 44.7
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 3.6e-46 189.1 145 55.2
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 3.6e-46 189.1 145 55.2
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 6.1e-46 188.3 145 55.2
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 1.8e-45 186.8 96 86.5
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 1.5e-44 183.7 143 53.1
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 3.3e-44 182.6 136 58.1
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 9.7e-44 181.0 91 87.9
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.1e-42 177.6 91 85.7
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.1e-39 167.5 121 61.2
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 1.5e-39 167.2 202 44.6
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 4.2e-39 165.6 179 50.8
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.2e-38 164.1 166 56.6
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 1.8e-37 160.2 185 48.1
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.3e-37 159.8 103 73.8
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 4.0e-37 159.1 154 55.2
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 4.0e-37 159.1 117 65.8
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 3.4e-36 156.0 119 52.9
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 8.3e-35 151.4 145 46.2
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 5.4e-34 148.7 147 55.8
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 4.2e-31 139.0 64 96.9
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 5.5e-31 138.7 141 43.3
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 2.6e-28 129.8 65 90.8
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 3.7e-27 125.9 68 80.9
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 1.4e-26 124.0 160 37.5
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.4e-26 123.2 198 38.4
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 1.2e-25 120.9 79 60.8
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 5.0e-24 115.5 73 71.2
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 2.2e-19 100.1 57 84.2
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 3.9e-16 89.4 83 60.2
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.5e-15 87.4 85 54.1
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 1.4e-13 80.9 74 62.2
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 2.6e-12 76.6 64 53.1
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 8.3e-11 71.6 81 44.4
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 1.9e-10 70.5 83 44.6
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.9e-10 70.5 47 59.6
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 5.4e-10 68.9 80 45.0
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.6e-06 56.2 62 51.6
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.6e-06 56.2 62 51.6


User provided reference genes

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