Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G005300 Prunus persica HOM05D006913 ORTHO05D008720 6.3e-103 377.5 197 100.0
MD09G1287900 Malus domestica HOM05D006913 ORTHO05D008720 3.5e-85 318.5 194 85.1
MD17G1280100 Malus domestica HOM05D006913 ORTHO05D008720 1.5e-83 313.2 197 82.7
RcHm_v2.0_Chr3g0486731 Rosa chinensis HOM05D006913 ORTHO05D008720 8.1e-82 307.4 196 81.1
FAN28G1862 Fragaria x ananassa HOM05D006913 ORTHO05D008720 6.0e-77 291.2 196 76.5
Thecc.01G320200 Theobroma cacao HOM05D006913 ORTHO05D008720 1.3e-76 290.0 197 77.2
FvH4_1g26590 Fragaria vesca HOM05D006913 ORTHO05D008720 1.5e-75 286.6 196 76.0
TWI59G1195 Tripterygium wilfordii HOM05D006913 ORTHO05D008720 1.9e-75 286.2 195 77.4
Duzib138G1774 Durio zibethinus HOM05D006913 ORTHO05D008720 3.3e-75 285.4 200 75.5
Haze_05096 Corylus avellana HOM05D006913 ORTHO05D008720 1.6e-74 283.1 198 74.7
GSVIVG01028181001 Vitis vinifera HOM05D006913 ORTHO05D008720 1.6e-74 283.1 193 73.6
Cfa004859 Carpinus fangiana HOM05D006913 ORTHO05D008720 3.6e-74 282.0 198 73.7
Ciclev10022378m.g Citrus clementina HOM05D006913 ORTHO05D008720 8.1e-74 280.8 196 76.0
Nn3g21840 Nelumbo nucifera HOM05D006913 ORTHO05D008720 1.2e-72 276.9 191 73.8
CiPaw.07G121500 Carya illinoinensis HOM05D006913 ORTHO05D008720 3.4e-72 275.4 198 74.2
Manes.01G231800 Manihot esculenta HOM05D006913 ORTHO05D008720 3.4e-72 275.4 195 73.3
TAR362G1022 Trochodendron aralioides HOM05D006913 ORTHO05D008720 3.4e-72 275.4 196 73.0
CSS0007691 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 4.9e-71 271.6 191 72.8
FAN26G0114 Fragaria x ananassa HOM05D006913 ORTHO05D008720 6.4e-71 271.2 228 66.2
CSS0013168 Camellia sinensis var. sinensis HOM05D006913 ORTHO05D008720 3.2e-70 268.9 191 72.8
Dinv12109 Davidia involucrata HOM05D006913 ORTHO05D008720 4.2e-70 268.5 197 72.6
Potri.002G191300 Populus trichocarpa HOM05D006913 ORTHO05D008720 5.4e-70 268.1 199 71.9
FAN19G0677 Fragaria x ananassa HOM05D006913 ORTHO05D008720 1.2e-69 266.9 228 65.8
Atru.chr5.924 Acer truncatum HOM05D006913 ORTHO05D008720 2.1e-69 266.2 194 74.7
PSO170G2504 Papaver somniferum HOM05D006913 ORTHO05D008720 2.7e-69 265.8 195 69.2
QL12p018506 Quercus lobata HOM05D006913 ORTHO05D008720 2.7e-69 265.8 206 71.4
PSO724G1078 Papaver somniferum HOM05D006913 ORTHO05D008720 3.9e-68 261.9 195 68.2
Medtr7g109970 Medicago truncatula HOM05D006913 ORTHO05D008720 3.3e-67 258.8 193 70.5
Cpa.g.c29544.2 Carica papaya HOM05D006913 ORTHO05D008720 9.6e-67 257.3 197 70.1
Sed0008492 Sechium edule HOM05D006913 ORTHO05D008720 2.8e-66 255.8 191 69.6
Hma1.2p1_0408F.1_g146440 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 3.6e-66 255.4 201 67.7
Dinv33147 Davidia involucrata HOM05D006913 ORTHO05D008720 4.8e-66 255.0 191 70.7
THA.LOC104801315 Tarenaya hassleriana HOM05D006913 ORTHO05D008720 2.4e-65 252.7 198 68.2
Aqoxy5G02741 Aquilegia oxysepala HOM05D006913 ORTHO05D008720 3.1e-65 252.3 197 68.5
MBI18_g11536_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 3.4e-64 248.8 194 67.0
CiPaw.08G086000 Carya illinoinensis HOM05D006913 ORTHO05D008720 4.4e-64 248.4 191 72.8
MELO3C023629.2 Cucumis melo HOM05D006913 ORTHO05D008720 5.8e-64 248.1 185 70.8
MBI18_g09652_MAGBIO Magnolia biondii HOM05D006913 ORTHO05D008720 9.9e-64 247.3 195 66.2
CsaV3_7G030270 Cucumis sativus L. HOM05D006913 ORTHO05D008720 1.7e-63 246.5 156 78.8
Lalb_Chr04g0260061 Lupinus albus HOM05D006913 ORTHO05D008720 2.9e-63 245.7 199 65.8
PGR083G1650 Punica granatum HOM05D006913 ORTHO05D008720 2.9e-63 245.7 209 65.1
Aa31LG5G1440 Aethionema arabicum HOM05D006913 ORTHO05D008720 6.4e-63 244.6 188 68.1
VMungo1383G0882 Vigna mungo HOM05D006913 ORTHO05D008720 6.4e-63 244.6 196 67.9
Migut.D00043 Erythranthe guttata HOM05D006913 ORTHO05D008720 1.4e-62 243.4 184 67.4
Carub.0006s3531 Capsella rubella HOM05D006913 ORTHO05D008720 3.2e-62 242.3 186 68.3
Glyma.19G219300 Glycine max HOM05D006913 ORTHO05D008720 3.2e-62 242.3 176 71.6
Sp6g01770 Schrenkiella parvula HOM05D006913 ORTHO05D008720 5.4e-62 241.5 187 67.9
AL6G51370 Arabidopsis lyrata HOM05D006913 ORTHO05D008720 7.1e-62 241.1 188 68.6
BcaB01g02398 Brassica carinata HOM05D006913 ORTHO05D008720 7.1e-62 241.1 188 67.6
BraA03t12321Z Brassica rapa HOM05D006913 ORTHO05D008720 7.1e-62 241.1 188 67.6
Sabra02G0164300 Salix brachista HOM05D006913 ORTHO05D008720 7.1e-62 241.1 230 59.6
Sopen06g004130 Solanum pennellii HOM05D006913 ORTHO05D008720 7.1e-62 241.1 199 66.3
PGSC0003DMG400007277 Solanum tuberosum HOM05D006913 ORTHO05D008720 1.2e-61 240.4 159 74.8
AT4G01900 Arabidopsis thaliana HOM05D006913 ORTHO05D008720 1.6e-61 240.0 188 69.1
Lj1g0024926 Lotus japonicus HOM05D006913 ORTHO05D008720 2.7e-61 239.2 189 67.7
Solyc06g009400.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 2.7e-61 239.2 159 74.8
TPR.G4038 Trifolium pratense HOM05D006913 ORTHO05D008720 2.7e-61 239.2 183 67.8
Thhalv10028983m.g Eutrema salsugineum HOM05D006913 ORTHO05D008720 4.6e-61 238.4 187 67.9
Nitab4.5_0003324g0110 Nicotiana tabacum HOM05D006913 ORTHO05D008720 4.6e-61 238.4 210 64.3
A03p31400 Brassica napus HOM05D006913 ORTHO05D008720 1.0e-60 237.3 188 66.5
Nitab4.5_0000363g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.7e-60 236.5 210 63.8
Sc05g0000220 Simmondsia chinensis HOM05D006913 ORTHO05D008720 2.3e-60 236.1 159 73.6
SalBow3G0392 Salvia bowleyana HOM05D006913 ORTHO05D008720 6.6e-60 234.6 183 67.8
Sed0005932 Sechium edule HOM05D006913 ORTHO05D008720 6.6e-60 234.6 191 68.6
CAN.G1280.40 Capsicum annuum HOM05D006913 ORTHO05D008720 1.9e-59 233.0 180 67.2
ClCG09G004810 Citrullus lanatus HOM05D006913 ORTHO05D008720 1.9e-59 233.0 213 62.9
MSTRG.21716 Avicennia marina HOM05D006913 ORTHO05D008720 4.3e-59 231.9 188 65.4
arahy.Tifrunner.gnm1.ann1.6PPK8V Arachis hypogaea HOM05D006913 ORTHO05D008720 5.6e-59 231.5 199 66.3
Glyma.03G222100 Glycine max HOM05D006913 ORTHO05D008720 3.6e-58 228.8 215 61.9
Psat3g018680 Pisum sativum HOM05D006913 ORTHO05D008720 4.8e-58 228.4 166 69.9
C03p38310 Brassica napus HOM05D006913 ORTHO05D008720 8.1e-58 227.6 189 65.6
CDE11G0810 Ceratophyllum demersum HOM05D006913 ORTHO05D008720 3.1e-57 225.7 161 70.8
BcaC01g06792 Brassica carinata HOM05D006913 ORTHO05D008720 4.0e-57 225.3 189 65.1
BolC3t16112H Brassica oleracea HOM05D006913 ORTHO05D008720 4.0e-57 225.3 189 65.1
ATR0693G068 Amborella trichopoda HOM05D006913 ORTHO05D008720 9.0e-57 224.2 143 76.9
Nitab4.5_0000222g0190 Nicotiana tabacum HOM05D006913 ORTHO05D008720 1.2e-56 223.8 178 68.0
HPP92_002654 Vanilla planifolia HOM05D006913 ORTHO05D008720 1.2e-56 223.8 159 71.7
Peaxi162Scf00058g00218 Petunia axillaris HOM05D006913 ORTHO05D008720 7.6e-56 221.1 196 63.3
Rhsim01G0292800 Rhododendron simsii HOM05D006913 ORTHO05D008720 1.3e-55 220.3 197 62.4
Os05g0133100 Oryza sativa ssp. japonica HOM05D006913 ORTHO05D008720 4.2e-54 215.3 141 79.4
BcaB01g02393 Brassica carinata HOM05D006913 ORTHO05D008720 1.6e-53 213.4 124 83.9
DCAR_002917 Daucus carota HOM05D006913 ORTHO05D008720 4.6e-53 211.8 191 61.8
arahy.Tifrunner.gnm1.ann1.IRZ7G5 Arachis hypogaea HOM05D006913 ORTHO05D008720 1.8e-52 209.9 193 63.7
unitig_578.g16634 Utricularia gibba HOM05D006913 ORTHO05D008720 1.8e-52 209.9 191 59.2
Cc01_g21970 Coffea canephora HOM05D006913 ORTHO05D008720 9.6e-51 204.1 131 77.9
FAN23G2363 Fragaria x ananassa HOM05D000049 ORTHO05D000027 1.4e-49 200.3 220 55.0
Pp3c4_15530 Physcomitrium patens HOM05D006913 ORTHO05D008720 1.9e-46 189.9 135 70.4
Mapoly0061s0127 Marchantia polymorpha HOM05D006913 ORTHO05D008720 7.1e-46 188.0 124 72.6
vmacro15097 Vaccinium macrocarpon HOM05D006913 ORTHO05D008720 7.9e-45 184.5 238 49.6
Eucgr.H00899 Eucalyptus grandis HOM05D006913 ORTHO05D008720 1.3e-44 183.7 195 57.4
COL.COLO4_23180 Corchorus olitorius HOM05D006913 ORTHO05D008720 3.3e-43 179.1 105 84.8
Lj1C13T3 Lonicera japonica HOM05D006913 ORTHO05D008720 1.8e-41 173.3 103 84.5
SGA_v2.0_scaffold80G25710 Striga asiatica HOM05D006913 ORTHO05D008720 1.8e-41 173.3 169 58.6
AUR62024592 Chenopodium quinoa HOM05D006913 ORTHO05D008720 5.3e-41 171.8 177 53.7
AagrBONN_evm.TU.Sc2ySwM_228.182 Anthoceros agrestis HOM05D006913 ORTHO05D008720 2.2e-39 166.4 122 68.9
Solyc01g015000.3 Solanum lycopersicum HOM05D006913 ORTHO05D008720 5.5e-38 161.8 107 78.5
Ca_09230_v3 Cicer arietinum L. HOM05D006913 ORTHO05D008720 9.3e-38 161.0 96 83.3
Oeu038057.1 Olea europaea HOM05D006913 ORTHO05D008720 2.1e-37 159.8 195 49.7
SEGI_19322 Sequoiadendron giganteum HOM05D006913 ORTHO05D008720 3.5e-37 159.1 103 75.7
Phvul.001G215500 Phaseolus vulgaris HOM05D006913 ORTHO05D008720 7.9e-37 157.9 139 61.2
SMO364G0946 Selaginella moellendorffii HOM05D006913 ORTHO05D008720 2.2e-34 149.8 105 70.5
Hund09668 Selenicereus undatus HOM05D006913 ORTHO05D008720 6.9e-33 144.8 153 54.2
Cre07.g357350 Chlamydomonas reinhardtii HOM05D006913 ORTHO05D008720 5.0e-31 138.7 143 51.7
Duzib211G0548 Durio zibethinus HOM05D006913 ORTHO05D008720 1.9e-30 136.7 107 64.5
CARHR249910 Cardamine hirsuta HOM05D006913 ORTHO05D008720 5.5e-30 135.2 79 83.5
MCO04G045 Micromonas commoda HOM05D006913 ORTHO05D008720 1.2e-29 134.0 136 55.1
Eucgr.L01805 Eucalyptus grandis HOM05D006913 ORTHO05D008720 1.0e-28 131.0 138 52.9
GSVIVG01010608001 Vitis vinifera HOM05D006913 ORTHO05D008720 5.3e-25 118.6 71 85.9
GSVIVG01037028001 Vitis vinifera HOM05D006913 ORTHO05D008720 5.3e-25 118.6 71 85.9
Nitab4.5_0001013g0020 Nicotiana tabacum HOM05D006913 ORTHO05D008720 6.9e-25 118.2 75 76.0
HPP92_027922 Vanilla planifolia HOM05D006913 ORTHO05D008720 1.4e-22 110.5 83 66.3
Hma1.2p1_3252F.1_g334540 Hydrangea macrophylla HOM05D006913 ORTHO05D008720 7.9e-21 104.8 140 47.1
HPP92_027923 Vanilla planifolia HOM05D006913 ORTHO05D008720 5.7e-19 98.6 63 77.8
Haze_27360 Corylus avellana HOM05D006913 ORTHO05D008720 8.2e-18 94.7 109 43.1
C09p01450 Brassica napus HOM05D006913 ORTHO05D008720 1.1e-11 74.3 39 87.2
BolC9t53077H Brassica oleracea HOM05D006913 ORTHO05D008720 1.1e-11 74.3 39 87.2
COL.COLO4_23179 Corchorus olitorius HOM05D006913 ORTHO05D157497 6.3e-10 68.6 64 60.9


User provided reference genes

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