Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G002600 Prunus persica HOM05D006977 ORTHO05D008738 5.2e-105 384.4 196 100.0
MD09G1290400 Malus domestica HOM05D006977 ORTHO05D008738 1.9e-67 259.6 199 73.4
FAN26G0658 Fragaria x ananassa HOM05D006977 ORTHO05D008738 8.6e-60 234.2 217 63.1
RcHm_v2.0_Chr3g0485771 Rosa chinensis HOM05D006977 ORTHO05D008738 1.1e-59 233.8 184 69.6
FAN19G2776 Fragaria x ananassa HOM05D006977 ORTHO05D008738 2.5e-59 232.6 215 63.3
FAN23G2129 Fragaria x ananassa HOM05D006977 ORTHO05D008738 1.2e-58 230.3 207 65.2
FAN28G2841 Fragaria x ananassa HOM05D006977 ORTHO05D008738 3.1e-57 225.7 202 66.3
Cfa004914 Carpinus fangiana HOM05D006977 ORTHO05D008738 4.0e-57 225.3 193 63.7
Dinv12080 Davidia involucrata HOM05D006977 ORTHO05D008738 8.9e-57 224.2 171 66.7
Haze_05149 Corylus avellana HOM05D006977 ORTHO05D008738 9.9e-56 220.7 193 63.2
QL05p057365 Quercus lobata HOM05D006977 ORTHO05D008738 9.2e-54 214.2 194 62.4
Thecc.01G325400 Theobroma cacao HOM05D006977 ORTHO05D008738 4.6e-53 211.8 177 63.8
CSS0050251 Camellia sinensis var. sinensis HOM05D006977 ORTHO05D008738 1.0e-52 210.7 164 66.5
GSVIVG01028248001 Vitis vinifera HOM05D006977 ORTHO05D008738 2.5e-51 206.1 180 61.1
Gohir.D11G109500 Gossypium hirsutum HOM05D006977 ORTHO05D008738 5.6e-51 204.9 172 61.0
Gorai.007G117100 Gossypium raimondii HOM05D006977 ORTHO05D008738 5.6e-51 204.9 172 61.0
FvH4_1g26230 Fragaria vesca HOM05D006977 ORTHO05D008738 1.6e-50 203.4 174 66.1
Gohir.A11G104700 Gossypium hirsutum HOM05D006977 ORTHO05D008738 1.6e-50 203.4 172 60.5
COL.COLO4_23128 Corchorus olitorius HOM05D006977 ORTHO05D008738 3.6e-50 202.2 171 63.7
Cpa.g.sc57.16 Carica papaya HOM05D006977 ORTHO05D008738 1.1e-49 200.7 174 62.6
Duzib133G0680 Durio zibethinus HOM05D006977 ORTHO05D008738 4.0e-49 198.7 177 58.2
Cpa.g.sc112.76 Carica papaya HOM05D006977 ORTHO05D008738 6.9e-49 198.0 170 61.2
Manes.05G008900 Manihot esculenta HOM05D006977 ORTHO05D008738 6.9e-49 198.0 196 59.7
Ciclev10022352m.g Citrus clementina HOM05D006977 ORTHO05D008738 1.2e-48 197.2 174 59.8
CiPaw.08G082500 Carya illinoinensis HOM05D006977 ORTHO05D008738 1.5e-48 196.8 195 60.0
Atru.chr5.861 Acer truncatum HOM05D006977 ORTHO05D008738 3.4e-48 195.7 170 62.9
Actinidia25872 Actinidia chinensis HOM05D006977 ORTHO05D008738 4.4e-48 195.3 155 63.9
Sabra14G0082500 Salix brachista HOM05D006977 ORTHO05D008738 4.4e-48 195.3 153 67.3
Ca_17328_v3 Cicer arietinum L. HOM05D006977 ORTHO05D008738 9.9e-48 194.1 171 61.4
Eucgr.A01003 Eucalyptus grandis HOM05D006977 ORTHO05D008738 9.9e-48 194.1 168 62.5
Glyma.04G053700 Glycine max HOM05D006977 ORTHO05D008738 9.9e-48 194.1 192 57.3
Potri.014G112200 Populus trichocarpa HOM05D006977 ORTHO05D008738 9.9e-48 194.1 184 58.7
TWI81G0461 Tripterygium wilfordii HOM05D006977 ORTHO05D008738 8.4e-47 191.0 157 64.3
Duzib268G1723 Durio zibethinus HOM05D006977 ORTHO05D008738 1.1e-46 190.7 177 58.2
Lalb_Chr11g0071671 Lupinus albus HOM05D006977 ORTHO05D008738 1.1e-46 190.7 156 64.7
Cc04_g01560 Coffea canephora HOM05D006977 ORTHO05D008738 1.4e-46 190.3 184 55.4
Phvul.L002843 Phaseolus vulgaris HOM05D006977 ORTHO05D008738 3.2e-46 189.1 163 59.5
Nn4g24845 Nelumbo nucifera HOM05D006977 ORTHO05D008738 5.4e-46 188.3 174 57.5
VMungo0720G2811 Vigna mungo HOM05D006977 ORTHO05D008738 5.4e-46 188.3 187 54.5
Glyma.10G137900 Glycine max HOM05D006977 ORTHO05D008738 9.3e-46 187.6 188 56.9
MSTRG.6995 Avicennia marina HOM05D006977 ORTHO05D008738 1.2e-45 187.2 156 64.1
Hma1.2p1_0484F.1_g162990 Hydrangea macrophylla HOM05D006977 ORTHO05D008738 1.2e-45 187.2 174 58.0
MBI19_g30288_MAGBIO Magnolia biondii HOM05D006977 ORTHO05D008738 2.7e-45 186.0 160 60.0
PGR042G1466 Punica granatum HOM05D006977 ORTHO05D008738 7.8e-45 184.5 170 58.8
Medtr8g103265 Medicago truncatula HOM05D006977 ORTHO05D008738 1.0e-44 184.1 166 59.6
PSO170G4516 Papaver somniferum HOM05D006977 ORTHO05D008738 3.0e-44 182.6 154 57.8
Psat7g015240 Pisum sativum HOM05D006977 ORTHO05D008738 3.0e-44 182.6 173 58.4
Lj5g0006261 Lotus japonicus HOM05D006977 ORTHO05D008738 3.9e-44 182.2 160 60.0
PSO357G0421 Papaver somniferum HOM05D006977 ORTHO05D008738 5.1e-44 181.8 154 59.1
Rhsim01G0293500 Rhododendron simsii HOM05D006977 ORTHO05D008738 1.9e-43 179.9 164 58.5
HPP92_012764 Vanilla planifolia HOM05D006977 ORTHO05D008738 3.3e-43 179.1 159 55.3
ClCG01G007180 Citrullus lanatus HOM05D006977 ORTHO05D008738 5.6e-43 178.3 154 61.0
ECA236G2063 Erigeron canadensis HOM05D006977 ORTHO05D008738 4.8e-42 175.3 181 52.5
Migut.M01655 Erythranthe guttata HOM05D006977 ORTHO05D008738 4.8e-42 175.3 161 59.0
AUR62007556 Chenopodium quinoa HOM05D006977 ORTHO05D008738 8.1e-42 174.5 180 51.1
Lsat_1_v5_gn_7_107761 Lactuca sativa HOM05D006977 ORTHO05D008738 8.1e-42 174.5 171 55.6
AUR62020194 Chenopodium quinoa HOM05D006977 ORTHO05D008738 1.1e-41 174.1 158 55.1
HanXRQChr15g0493961 Helianthus annuus HOM05D006977 ORTHO05D008738 2.4e-41 172.9 181 51.4
TAR362G0624 Trochodendron aralioides HOM05D006977 ORTHO05D008738 6.9e-41 171.4 157 57.3
CsaV3_5G018620 Cucumis sativus L. HOM05D006977 ORTHO05D008738 1.2e-40 170.6 158 58.9
MELO3C005192.2 Cucumis melo HOM05D006977 ORTHO05D008738 2.0e-40 169.9 165 55.8
Sed0019401 Sechium edule HOM05D006977 ORTHO05D008738 2.0e-40 169.9 171 54.4
Duzib268G1378 Durio zibethinus HOM05D006977 ORTHO05D008738 2.6e-40 169.5 143 60.1
THA.LOC104799825 Tarenaya hassleriana HOM05D006977 ORTHO05D008738 4.5e-40 168.7 157 54.8
arahy.Tifrunner.gnm1.ann1.PT1J72 Arachis hypogaea HOM05D006977 ORTHO05D008738 7.6e-40 167.9 151 59.6
arahy.Tifrunner.gnm1.ann1.KP3I1I Arachis hypogaea HOM05D006977 ORTHO05D008738 1.3e-39 167.2 156 58.3
ATR0796G043 Amborella trichopoda HOM05D006977 ORTHO05D008738 1.7e-39 166.8 156 54.5
Sc02g0004000 Simmondsia chinensis HOM05D006977 ORTHO05D008738 2.2e-39 166.4 172 52.3
PGSC0003DMG400001120 Solanum tuberosum HOM05D006977 ORTHO05D008738 3.8e-39 165.6 164 56.7
Hund02455 Selenicereus undatus HOM05D006977 ORTHO05D008738 8.4e-39 164.5 147 56.5
CANSAT25G0488 Cannabis sativa HOM05D006977 ORTHO05D008738 1.4e-38 163.7 150 63.3
Aa31LG5G1570 Aethionema arabicum HOM05D006977 ORTHO05D008738 4.2e-38 162.2 151 53.0
Aqoxy5G02822 Aquilegia oxysepala HOM05D006977 ORTHO05D008738 4.2e-38 162.2 141 58.9
Solyc01g080830.3 Solanum lycopersicum HOM05D006977 ORTHO05D008738 5.4e-38 161.8 164 56.1
Sopen01g030650 Solanum pennellii HOM05D006977 ORTHO05D008738 9.3e-38 161.0 147 60.5
vmacro15094 Vaccinium macrocarpon HOM05D006977 ORTHO05D008738 9.3e-38 161.0 138 60.1
DCAR_012297 Daucus carota HOM05D006977 ORTHO05D008738 1.6e-37 160.2 166 55.4
Zm00001eb328690 Zea mays HOM05D006977 ORTHO05D008738 2.7e-37 159.5 170 48.2
Carub.0006s3543 Capsella rubella HOM05D006977 ORTHO05D008738 4.6e-37 158.7 149 53.7
CARHR249760 Cardamine hirsuta HOM05D006977 ORTHO05D008738 7.9e-37 157.9 151 53.0
CiPaw.07G125600 Carya illinoinensis HOM05D006977 ORTHO05D008738 7.9e-37 157.9 196 52.0
AL6G51510 Arabidopsis lyrata HOM05D006977 ORTHO05D008738 1.3e-36 157.1 151 53.0
Oeu031543.1 Olea europaea HOM05D006977 ORTHO05D008738 2.3e-36 156.4 161 55.3
AT4G01790 Arabidopsis thaliana HOM05D006977 ORTHO05D008738 3.0e-36 156.0 151 53.6
Thhalv10029024m.g Eutrema salsugineum HOM05D006977 ORTHO05D008738 3.0e-36 156.0 151 52.3
Sp3g31270 Schrenkiella parvula HOM05D006977 ORTHO05D008738 3.0e-36 156.0 156 50.6
SpUn0082_0020 Schrenkiella parvula HOM05D006977 ORTHO05D008738 3.0e-36 156.0 156 50.6
BcaB01g02378 Brassica carinata HOM05D006977 ORTHO05D008738 5.1e-36 155.2 155 50.3
BcaC01g06803 Brassica carinata HOM05D006977 ORTHO05D008738 6.7e-36 154.8 146 53.4
BolC3t16121H Brassica oleracea HOM05D006977 ORTHO05D008738 6.7e-36 154.8 146 53.4
Os07g0636400 Oryza sativa ssp. japonica HOM05D006977 ORTHO05D008738 8.7e-36 154.5 168 46.4
Duzib268G1823 Durio zibethinus HOM05D006977 ORTHO05D008738 1.1e-35 154.1 143 58.0
C03p38480 Brassica napus HOM05D006977 ORTHO05D008738 3.3e-35 152.5 146 52.7
Lj1A7G42 Lonicera japonica HOM05D006977 ORTHO05D008738 9.6e-35 151.0 127 60.6
TPR.G23504 Trifolium pratense HOM05D006977 ORTHO05D008738 9.6e-35 151.0 142 56.3
SGA_v2.0_scaffold204G41642 Striga asiatica HOM05D006977 ORTHO05D008738 4.8e-34 148.7 154 55.2
A03p31490 Brassica napus HOM05D006977 ORTHO05D008738 6.2e-34 148.3 146 51.4
BraA03t12329Z Brassica rapa HOM05D006977 ORTHO05D008738 6.2e-34 148.3 146 51.4
SalBow5G4120 Salvia bowleyana HOM05D006977 ORTHO05D008738 6.9e-33 144.8 150 53.3
EL10Ac6g15579 Beta vulgaris HOM05D006977 ORTHO05D008738 1.2e-32 144.1 201 44.3
Peaxi162Scf00309g00082 Petunia axillaris HOM05D006977 ORTHO05D008738 7.6e-32 141.4 123 62.6
CAN.G100.60 Capsicum annuum HOM05D006977 ORTHO05D008738 1.7e-31 140.2 115 62.6
MD17G1285100 Malus domestica HOM05D006977 ORTHO05D008738 1.4e-30 137.1 89 80.9
unitig_8.g4039 Utricularia gibba HOM05D006977 ORTHO05D008738 1.0e-28 131.0 163 46.0
Nitab4.5_0003092g0050 Nicotiana tabacum HOM05D006977 ORTHO05D008738 3.9e-28 129.0 137 54.0
Sp6g01640 Schrenkiella parvula HOM05D006977 ORTHO05D008738 2.4e-25 119.8 112 52.7
Nitab4.5_0000222g0410 Nicotiana tabacum HOM05D006977 ORTHO05D008738 4.0e-25 119.0 109 57.8
CDE02G1393 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 1.8e-20 103.6 92 58.7
Duzib138G1646 Durio zibethinus HOM05D006977 ORTHO05D008738 2.1e-13 80.1 103 48.5
CDE04G2744 Ceratophyllum demersum HOM05D006977 ORTHO05D008738 6.7e-12 75.1 114 40.4
Mapoly0147s0029 Marchantia polymorpha HOM05D006977 ORTHO05D008738 1.5e-11 73.9 176 31.8
Pp3c20_22530 Physcomitrium patens HOM05D006977 ORTHO05D008738 1.2e-08 64.3 142 31.7


User provided reference genes

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