Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 1.3e-222 776.2 410 100.0
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 3.4e-175 618.6 413 80.6
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 9.3e-173 610.5 413 78.9
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 1.1e-168 597.0 347 86.2
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 8.1e-161 570.9 340 83.8
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 1.4e-160 570.1 370 76.8
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 3.1e-160 568.9 359 80.2
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 4.0e-160 568.5 359 79.4
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 2.6e-159 565.8 355 77.2
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 7.6e-159 564.3 394 73.9
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 3.8e-158 562.0 354 78.5
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 5.5e-157 558.1 355 79.4
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 6.0e-156 554.7 347 79.0
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 6.7e-155 551.2 336 80.1
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 1.1e-152 543.9 355 76.6
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 9.0e-152 540.8 355 76.3
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.6e-151 539.3 337 78.3
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 7.6e-151 537.7 365 74.5
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 1.0e-150 537.3 377 75.9
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.7e-150 536.6 365 74.2
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 5.0e-150 535.0 341 77.1
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 6.5e-150 534.6 394 70.1
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.9e-149 533.1 403 71.7
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.2e-149 531.9 346 75.4
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 7.1e-149 531.2 340 77.1
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 2.1e-148 529.6 394 68.3
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 3.5e-148 528.9 333 77.8
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 3.5e-148 528.9 348 72.4
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 6.1e-148 528.1 386 71.0
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.0e-147 527.3 340 76.5
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 2.3e-147 526.2 392 66.8
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 5.1e-147 525.0 337 76.3
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.1e-146 523.9 389 70.7
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 1.9e-146 523.1 340 74.7
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.5e-146 522.7 338 75.1
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 4.3e-146 521.9 416 64.9
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 5.7e-146 521.5 345 73.6
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.6e-145 520.0 380 68.7
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 8.2e-145 517.7 339 74.6
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 8.2e-145 517.7 377 67.9
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.1e-144 517.3 346 71.7
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 4.1e-144 515.4 336 75.6
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 6.9e-144 514.6 355 69.9
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 9.0e-144 514.2 342 74.3
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.2e-143 513.8 346 71.1
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.2e-143 513.8 346 71.1
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 2.0e-143 513.1 346 72.0
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 3.4e-143 512.3 346 71.1
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 4.5e-143 511.9 343 73.5
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 5.9e-143 511.5 381 68.2
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 5.9e-143 511.5 381 68.2
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 7.7e-143 511.1 339 72.9
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.0e-142 510.8 354 70.3
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.0e-142 510.8 346 71.1
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.3e-142 510.4 343 73.5
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.3e-142 510.4 368 69.8
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.2e-142 509.6 393 64.6
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 2.9e-142 509.2 343 73.5
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 2.9e-142 509.2 342 70.5
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 3.8e-142 508.8 368 69.6
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.1e-141 507.3 338 73.1
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 2.5e-141 506.1 392 65.6
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 3.2e-141 505.8 335 73.7
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 1.6e-140 503.4 354 69.8
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 2.1e-140 503.1 383 66.8
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.6e-140 502.3 341 69.8
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 4.6e-140 501.9 340 71.2
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 4.6e-140 501.9 343 71.7
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 1.4e-139 500.4 343 71.1
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.4e-139 500.4 348 70.7
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 3.0e-139 499.2 356 69.9
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 8.8e-139 497.7 376 67.0
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 8.8e-139 497.7 358 67.3
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 2.5e-138 496.1 343 70.6
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 4.3e-138 495.4 305 78.7
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 7.4e-138 494.6 346 71.1
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 9.7e-138 494.2 386 65.0
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.7e-137 493.4 338 71.3
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 2.2e-137 493.0 370 66.8
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 3.7e-137 492.3 384 64.8
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 4.8e-137 491.9 386 62.7
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 1.8e-136 490.0 346 68.2
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.8e-136 490.0 345 68.1
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.2e-135 487.3 370 66.2
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 1.5e-135 486.9 370 66.2
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 7.7e-135 484.6 320 72.8
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 1.0e-134 484.2 368 65.5
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 1.0e-134 484.2 368 65.5
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 1.0e-134 484.2 366 66.1
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.2e-134 483.0 369 62.9
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 5.0e-134 481.9 356 65.4
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 2.7e-132 476.1 360 64.7
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.4e-131 473.8 375 64.8
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 2.6e-130 469.5 417 57.8
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 4.4e-130 468.8 348 69.8
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 3.7e-129 465.7 323 68.1
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 3.6e-124 449.1 293 74.1
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 4.7e-124 448.7 296 77.4
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.3e-121 440.7 556 46.9
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 2.2e-121 439.9 339 61.4
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 2.2e-121 439.9 338 64.2
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 6.3e-121 438.3 343 70.3
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.1e-120 437.6 279 78.5
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 3.5e-119 432.6 269 76.6
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 5.9e-119 431.8 362 63.5
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.5e-117 427.2 358 60.1
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 7.2e-117 424.9 283 68.9
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 2.7e-116 422.9 311 67.8
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 3.6e-116 422.5 275 74.5
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 2.3e-107 393.3 261 72.8
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 3.0e-107 392.9 299 65.9
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.8e-96 357.1 323 57.9
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 3.2e-96 356.3 228 77.6
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 4.1e-96 355.9 320 52.8
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.6e-95 354.0 317 53.9
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 4.6e-95 352.4 276 66.3
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 9.5e-93 344.7 316 54.1
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.6e-92 344.0 338 49.4
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.8e-91 340.5 322 52.5
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.5e-85 320.1 219 65.8
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 6.2e-84 315.5 224 67.9
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 3.2e-80 303.1 173 82.7
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 3.2e-80 303.1 626 34.8
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 6.0e-79 298.9 201 74.1
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 9.5e-77 291.6 230 65.2
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 9.9e-74 281.6 266 54.1
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 6.2e-68 262.3 186 69.9
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.4e-64 249.2 245 51.8
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.5e-61 241.1 234 56.0
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 3.2e-48 196.8 117 76.1
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 3.5e-47 193.4 154 68.2
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 2.5e-40 170.6 303 35.6
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.5e-40 169.5 157 52.2
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 3.5e-39 166.8 93 80.6
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 6.5e-33 146.0 324 30.6
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.5e-32 144.1 84 82.1
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 6.7e-30 136.0 317 30.3
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 2.3e-22 110.9 103 47.6
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 2.0e-18 97.8 78 66.7
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 6.5e-17 92.8 103 45.6
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 8.8e-14 82.4 188 28.7
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.3e-12 78.6 48 72.9


User provided reference genes

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