Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G328300 Prunus persica HOM05D007710 ORTHO05D004022 2.3e-46 188.3 84 100.0
Actinidia08760 Actinidia chinensis HOM05D007710 ORTHO05D004022 1.1e-40 169.5 78 93.6
RcHm_v2.0_Chr1g0384511 Rosa chinensis HOM05D007710 ORTHO05D004022 1.5e-40 169.1 82 90.2
MD01G1238100 Malus domestica HOM05D007710 ORTHO05D004022 9.5e-40 166.4 83 86.7
MD01G1238400 Malus domestica HOM05D007710 ORTHO05D004022 1.6e-39 165.6 83 86.7
CiPaw.06G035400 Carya illinoinensis HOM05D007710 ORTHO05D004022 4.7e-39 164.1 81 86.4
Haze_00383 Corylus avellana HOM05D007710 ORTHO05D004022 4.7e-39 164.1 82 85.4
FAN03G2015 Fragaria x ananassa HOM05D007710 ORTHO05D004022 1.0e-38 162.9 82 84.1
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 1.4e-38 162.5 81 84.0
Nitab4.5_0004530g0090 Nicotiana tabacum HOM05D007710 ORTHO05D004022 1.4e-38 162.5 78 88.5
arahy.Tifrunner.gnm1.ann1.GY8AT6 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.8e-38 162.2 83 81.9
arahy.Tifrunner.gnm1.ann1.U0IDC3 Arachis hypogaea HOM05D007710 ORTHO05D004022 1.8e-38 162.2 83 81.9
FvH4_7g34150 Fragaria vesca HOM05D007710 ORTHO05D004022 1.8e-38 162.2 82 84.1
CSS0005120 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.3e-38 161.8 78 87.2
CSS0038916 Camellia sinensis var. sinensis HOM05D007710 ORTHO05D004022 2.3e-38 161.8 78 87.2
Duzib128G0150 Durio zibethinus HOM05D007710 ORTHO05D004022 2.3e-38 161.8 84 83.3
GSVIVG01024345001 Vitis vinifera HOM05D007710 ORTHO05D004022 2.3e-38 161.8 78 89.7
Nitab4.5_0000021g0800 Nicotiana tabacum HOM05D007710 ORTHO05D004022 3.0e-38 161.4 78 87.2
TWI32G0404 Tripterygium wilfordii HOM05D007710 ORTHO05D004022 5.2e-38 160.6 81 85.2
CAN.G1131.30 Capsicum annuum HOM05D007710 ORTHO05D004022 6.8e-38 160.2 83 84.3
DCAR_009023 Daucus carota HOM05D007710 ORTHO05D004022 8.9e-38 159.8 83 83.1
TPR.G19627 Trifolium pratense HOM05D007710 ORTHO05D004022 8.9e-38 159.8 83 80.7
Phvul.011G019000 Phaseolus vulgaris HOM05D007710 ORTHO05D004022 1.5e-37 159.1 78 87.2
Lsat_1_v5_gn_2_60801 Lactuca sativa HOM05D007710 ORTHO05D004022 2.0e-37 158.7 77 85.7
Medtr4g478210 Medicago truncatula HOM05D007710 ORTHO05D004022 2.0e-37 158.7 79 86.1
Hund09805 Selenicereus undatus HOM05D007710 ORTHO05D004022 2.6e-37 158.3 83 79.5
Ciclev10033194m.g Citrus clementina HOM05D007710 ORTHO05D004022 5.7e-37 157.1 83 80.7
ECA233G0318 Erigeron canadensis HOM05D007710 ORTHO05D004022 5.7e-37 157.1 75 85.3
Thecc.05G219200 Theobroma cacao HOM05D007710 ORTHO05D004022 5.7e-37 157.1 84 81.0
Potri.013G078866 Populus trichocarpa HOM05D007710 ORTHO05D004022 7.5e-37 156.8 81 80.2
Atru.chr12.1914 Acer truncatum HOM05D007710 ORTHO05D004022 9.8e-37 156.4 83 79.5
Eucgr.A02986 Eucalyptus grandis HOM05D007710 ORTHO05D004022 9.8e-37 156.4 83 81.9
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 9.8e-37 156.4 82 81.7
Glyma.12G016700 Glycine max HOM05D007710 ORTHO05D004022 9.8e-37 156.4 78 84.6
MD06G1024400 Malus domestica HOM05D007710 ORTHO05D004022 1.3e-36 156.0 83 81.9
Peaxi162Scf00516g00641 Petunia axillaris HOM05D007710 ORTHO05D004022 2.2e-36 155.2 78 84.6
Lj3g0011322 Lotus japonicus HOM05D007710 ORTHO05D004022 2.9e-36 154.8 78 83.3
Gohir.A13G101700 Gossypium hirsutum HOM05D007710 ORTHO05D004022 4.9e-36 154.1 84 79.8
Hma1.2p1_0649F.1_g195220 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 4.9e-36 154.1 76 86.8
Manes.08G064400 Manihot esculenta HOM05D007710 ORTHO05D004022 4.9e-36 154.1 87 78.2
Sed0013213 Sechium edule HOM05D007710 ORTHO05D004022 6.4e-36 153.7 76 86.8
PGSC0003DMG400003164 Solanum tuberosum HOM05D007710 ORTHO05D004022 8.3e-36 153.3 78 83.3
PGSC0003DMG402026486 Solanum tuberosum HOM05D007710 ORTHO05D004022 8.3e-36 153.3 78 83.3
THA.LOC104805715 Tarenaya hassleriana HOM05D007710 ORTHO05D004022 1.1e-35 152.9 80 80.0
TAR375G0377 Trochodendron aralioides HOM05D007710 ORTHO05D004022 1.1e-35 152.9 76 85.5
HanXRQChr04g0105361 Helianthus annuus HOM05D007710 ORTHO05D004022 1.4e-35 152.5 83 77.1
Cc02_g00160 Coffea canephora HOM05D007710 ORTHO05D004022 2.4e-35 151.8 78 80.8
Sopen03g027960 Solanum pennellii HOM05D007710 ORTHO05D004022 2.4e-35 151.8 78 82.1
Manes.09G128500 Manihot esculenta HOM05D007710 ORTHO05D004022 3.2e-35 151.4 81 79.0
AUR62028202 Chenopodium quinoa HOM05D007710 ORTHO05D004022 7.0e-35 150.2 83 74.7
MELO3C021857.2 Cucumis melo HOM05D007710 ORTHO05D004022 7.0e-35 150.2 80 81.2
Psat7g170120 Pisum sativum HOM05D007710 ORTHO05D004022 7.0e-35 150.2 78 79.5
Solyc03g097200.3 Solanum lycopersicum HOM05D007710 ORTHO05D004022 7.0e-35 150.2 78 80.8
unitig_747.g21335 Utricularia gibba HOM05D007710 ORTHO05D004022 7.0e-35 150.2 78 82.1
BraA07t30900Z Brassica rapa HOM05D007710 ORTHO05D004022 9.2e-35 149.8 82 79.3
PGR042G1372 Punica granatum HOM05D007710 ORTHO05D004022 9.2e-35 149.8 81 76.5
Aa31LG2G2200 Aethionema arabicum HOM05D007710 ORTHO05D004022 2.0e-34 148.7 78 82.1
CsaV3_2G036650 Cucumis sativus L. HOM05D007710 ORTHO05D004022 2.7e-34 148.3 80 80.0
Migut.F00935 Erythranthe guttata HOM05D007710 ORTHO05D004022 2.7e-34 148.3 85 78.8
Aqoxy3G02299 Aquilegia oxysepala HOM05D007710 ORTHO05D004022 5.9e-34 147.1 79 78.5
EL10Ac3g05053 Beta vulgaris HOM05D007710 ORTHO05D004022 5.9e-34 147.1 81 76.5
BcaB03g15335 Brassica carinata HOM05D007710 ORTHO05D004022 5.9e-34 147.1 76 82.9
ATR0057G097 Amborella trichopoda HOM05D007710 ORTHO05D004022 7.8e-34 146.7 76 80.3
Mapoly0120s0048 Marchantia polymorpha HOM05D007710 ORTHO05D004022 1.0e-33 146.4 77 79.2
Sp5g19360 Schrenkiella parvula HOM05D007710 ORTHO05D004022 1.3e-33 146.0 81 76.5
A07p32740 Brassica napus HOM05D007710 ORTHO05D004022 1.7e-33 145.6 76 81.6
HPP92_014617 Vanilla planifolia HOM05D007710 ORTHO05D004022 3.9e-33 144.4 83 73.5
CARHR057330 Cardamine hirsuta HOM05D007710 ORTHO05D004022 5.0e-33 144.1 76 80.3
PSO782G0287 Papaver somniferum HOM05D007710 ORTHO05D004022 5.0e-33 144.1 76 81.6
PSO063G4155 Papaver somniferum HOM05D007710 ORTHO05D004022 8.6e-33 143.3 76 80.3
AL2G19620 Arabidopsis lyrata HOM05D007710 ORTHO05D004022 1.1e-32 142.9 76 78.9
AT1G65000 Arabidopsis thaliana HOM05D007710 ORTHO05D004022 1.1e-32 142.9 81 75.3
Nn6g33555 Nelumbo nucifera HOM05D007710 ORTHO05D004022 1.9e-32 142.1 76 77.6
CARHR056450 Cardamine hirsuta HOM05D007710 ORTHO05D004022 2.5e-32 141.7 76 78.9
BolC6t38987H Brassica oleracea HOM05D007710 ORTHO05D004022 4.3e-32 141.0 87 73.6
C06p38950 Brassica napus HOM05D007710 ORTHO05D004022 1.8e-30 135.6 87 70.1
Pp3c5_4790 Physcomitrium patens HOM05D007710 ORTHO05D004022 2.3e-30 135.2 76 72.4
Rhsim03G0223400 Rhododendron simsii HOM05D007710 ORTHO05D004022 4.4e-29 131.0 129 50.4
Ah.04g156350 Amaranthus hybridus HOM05D007710 ORTHO05D004022 6.0e-26 120.6 134 46.3
RcHm_v2.0_Chr2g0135851 Rosa chinensis HOM05D007710 ORTHO05D004022 2.8e-23 111.7 68 73.5
SMO347G0449 Selaginella moellendorffii HOM05D007710 ORTHO05D004022 9.9e-21 103.2 80 57.5
ClCG09G017200 Citrullus lanatus HOM05D007710 ORTHO05D004022 5.4e-19 97.4 189 32.8
Glyma.11G108600 Glycine max HOM05D007710 ORTHO05D004022 2.3e-17 92.0 42 92.9
Hma1.2p1_0649F.1_g195210 Hydrangea macrophylla HOM05D007710 ORTHO05D004022 2.3e-17 92.0 43 90.7
COL.COLO4_15187 Corchorus olitorius HOM05D007710 ORTHO05D004022 1.6e-15 85.9 41 90.2
SalBow2G0781 Salvia bowleyana HOM05D007710 ORTHO05D004022 3.6e-15 84.7 41 85.4
Os03g0857750 Oryza sativa ssp. japonica HOM05D007710 ORTHO05D004022 8.1e-15 83.6 42 81.0
Sc09g0007050 Simmondsia chinensis HOM05D007710 ORTHO05D004022 2.4e-14 82.0 43 79.1
QL09p021214 Quercus lobata HOM05D007710 ORTHO05D004022 3.4e-13 78.2 42 76.2
MSTRG.6 Avicennia marina HOM05D007710 ORTHO05D004022 1.3e-12 76.3 43 72.1
FAN01G0952 Fragaria x ananassa HOM05D002657 ORTHO05D003059 4.9e-12 74.3 41 70.7
ClCG05G010760 Citrullus lanatus HOM05D007646 ORTHO05D004022 1.4e-11 72.8 81 43.2
SalBow2G2426 Salvia bowleyana HOM05D007710 ORTHO05D004022 2.4e-11 72.0 41 73.2
Dinv29135 Davidia involucrata HOM05D007710 ORTHO05D004022 5.4e-11 70.9 32 96.9
ECA238G3641 Erigeron canadensis HOM05D007710 ORTHO05D004022 9.2e-11 70.1 40 72.5
Os08g0364500 Oryza sativa ssp. japonica HOM05D007646 ORTHO05D004022 1.2e-10 69.7 79 43.0
Carub.0005s1235 Capsella rubella HOM05D007646 ORTHO05D004022 1.6e-10 69.3 79 40.5
CiPaw.03G067200 Carya illinoinensis HOM05D007646 ORTHO05D004022 2.1e-10 68.9 79 41.8
QL07p035402 Quercus lobata HOM05D007646 ORTHO05D004022 2.1e-10 68.9 79 41.8
AT5G38060 Arabidopsis thaliana HOM05D007646 ORTHO05D004022 2.7e-10 68.6 79 40.5
Haze_14207 Corylus avellana HOM05D007646 ORTHO05D004022 3.5e-10 68.2 79 41.8
BolC6t36994H Brassica oleracea HOM05D007646 ORTHO05D004022 4.6e-10 67.8 79 39.2
Duzib133G1094 Durio zibethinus HOM05D007646 ORTHO05D004022 4.6e-10 67.8 79 39.2
Eucgr.F02813 Eucalyptus grandis HOM05D007646 ORTHO05D004022 4.6e-10 67.8 79 40.5
Phvul.008G009900 Phaseolus vulgaris HOM05D007646 ORTHO05D004022 4.6e-10 67.8 79 40.5
VMungo1383G0770 Vigna mungo HOM05D007646 ORTHO05D004022 4.6e-10 67.8 79 40.5
Zm00001eb042800 Zea mays HOM05D007646 ORTHO05D004022 4.6e-10 67.8 79 41.8
AL7G52880 Arabidopsis lyrata HOM05D007646 ORTHO05D004022 6.0e-10 67.4 79 39.2
BcaC08g44354 Brassica carinata HOM05D007646 ORTHO05D004022 7.8e-10 67.0 79 39.2
BraA07t29660Z Brassica rapa HOM05D007646 ORTHO05D004022 7.8e-10 67.0 79 39.2
Glyma.02G091100 Glycine max HOM05D007646 ORTHO05D004022 7.8e-10 67.0 79 40.5
arahy.Tifrunner.gnm1.ann1.27TPXA Arachis hypogaea HOM05D007646 ORTHO05D004022 1.0e-09 66.6 81 39.5
arahy.Tifrunner.gnm1.ann1.FGX6FG Arachis hypogaea HOM05D007646 ORTHO05D004022 1.0e-09 66.6 81 39.5
HanXRQChr12g0375971 Helianthus annuus HOM05D007646 ORTHO05D004022 1.0e-09 66.6 88 38.6
Sp7g04020 Schrenkiella parvula HOM05D007646 ORTHO05D004022 1.3e-09 66.2 79 39.2
Lsat_1_v5_gn_3_83021 Lactuca sativa HOM05D007646 ORTHO05D004022 1.7e-09 65.9 79 39.2
CARHR214680 Cardamine hirsuta HOM05D007646 ORTHO05D004022 2.3e-09 65.5 79 38.0
Lj1g0016280 Lotus japonicus HOM05D007646 ORTHO05D004022 2.3e-09 65.5 77 40.3
THA.LOC104822453 Tarenaya hassleriana HOM05D007646 ORTHO05D004022 2.3e-09 65.5 79 39.2
BcaB02g08021 Brassica carinata HOM05D007646 ORTHO05D004022 3.0e-09 65.1 79 39.2
Thhalv10027987m.g Eutrema salsugineum HOM05D007646 ORTHO05D004022 3.0e-09 65.1 79 39.2
Manes.02G073800 Manihot esculenta HOM05D007646 ORTHO05D004022 3.0e-09 65.1 79 38.0
Psat3g096480 Pisum sativum HOM05D007646 ORTHO05D004022 3.0e-09 65.1 79 39.2
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 3.9e-09 64.7 79 39.2
Ciclev10013088m.g Citrus clementina HOM05D007646 ORTHO05D004022 3.9e-09 64.7 79 39.2
Hund13692 Selenicereus undatus HOM05D007646 ORTHO05D004022 3.9e-09 64.7 79 38.0
Solyc02g063300.3 Solanum lycopersicum HOM05D007646 ORTHO05D004022 3.9e-09 64.7 79 38.0
Sopen02g014370 Solanum pennellii HOM05D007646 ORTHO05D004022 3.9e-09 64.7 79 38.0
TPR.G28547 Trifolium pratense HOM05D007646 ORTHO05D004022 3.9e-09 64.7 79 39.2
HPP92_011530 Vanilla planifolia HOM05D007646 ORTHO05D004022 3.9e-09 64.7 79 38.0
Pp3c20_8520 Physcomitrium patens HOM05D007646 ORTHO05D004022 5.1e-09 64.3 79 39.2
SGA_v2.0_scaffold329G48872 Striga asiatica HOM05D007646 ORTHO05D004022 5.1e-09 64.3 79 36.7
AagrBONN_evm.TU.Sc2ySwM_117.3189 Anthoceros agrestis HOM05D007646 ORTHO05D004022 6.6e-09 63.9 79 38.0
Cc07_g08290 Coffea canephora HOM05D007646 ORTHO05D004022 6.6e-09 63.9 79 38.0
Manes.01G114800 Manihot esculenta HOM05D007646 ORTHO05D004022 6.6e-09 63.9 79 36.7
Gohir.A07G075950 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.1e-08 63.2 79 36.7
PSO478G0345 Papaver somniferum HOM05D007646 ORTHO05D004022 1.1e-08 63.2 77 36.4
PGSC0003DMG400010412 Solanum tuberosum HOM05D007646 ORTHO05D004022 1.1e-08 63.2 79 38.0
vmacro05494 Vaccinium macrocarpon HOM05D007646 ORTHO05D004022 1.1e-08 63.2 79 36.7
Gohir.D07G080400 Gossypium hirsutum HOM05D007646 ORTHO05D004022 1.5e-08 62.8 79 36.7
Gorai.001G085500 Gossypium raimondii HOM05D007646 ORTHO05D004022 1.5e-08 62.8 79 36.7
Lalb_Chr10g0091581 Lupinus albus HOM05D007646 ORTHO05D004022 1.5e-08 62.8 79 39.2
Thecc.04G124000 Theobroma cacao HOM05D007646 ORTHO05D004022 1.5e-08 62.8 79 36.7
Potri.017G122500 Populus trichocarpa HOM05D007646 ORTHO05D004022 1.9e-08 62.4 83 37.3
Prupe.3G151500 Prunus persica HOM05D007646 ORTHO05D004022 1.9e-08 62.4 83 36.1
TAR629G1988 Trochodendron aralioides HOM05D007646 ORTHO05D004022 1.9e-08 62.4 83 37.3
CBR_g4014 Chara braunii HOM05D007646 ORTHO05D004022 2.5e-08 62.0 77 36.4
Atru.chr1.1768 Acer truncatum HOM05D007646 ORTHO05D004022 3.3e-08 61.6 79 36.7
Aqoxy3G00145 Aquilegia oxysepala HOM05D007646 ORTHO05D004022 3.3e-08 61.6 79 34.2
Cpa.g.sc116.10 Carica papaya HOM05D007646 ORTHO05D004022 3.3e-08 61.6 79 36.7
Migut.L00480 Erythranthe guttata HOM05D007646 ORTHO05D004022 3.3e-08 61.6 83 34.9
MSTRG.3534 Avicennia marina HOM05D007646 ORTHO05D004022 4.3e-08 61.2 84 35.7
Rhsim10G0078400 Rhododendron simsii HOM05D007646 ORTHO05D004022 4.3e-08 61.2 83 36.1
Sc11g0008560 Simmondsia chinensis HOM05D007646 ORTHO05D004022 4.3e-08 61.2 79 36.7
CANSAT54G0187 Cannabis sativa HOM05D007646 ORTHO05D004022 5.6e-08 60.8 79 36.7
Cfa007863 Carpinus fangiana HOM05D007646 ORTHO05D004022 5.6e-08 60.8 101 33.7
DCAR_010731 Daucus carota HOM05D007646 ORTHO05D004022 7.3e-08 60.5 95 36.8
Hma1.2p1_0283F.1_g113630 Hydrangea macrophylla HOM05D007646 ORTHO05D004022 7.3e-08 60.5 79 35.4
Sed0004781 Sechium edule HOM05D007646 ORTHO05D004022 7.3e-08 60.5 79 38.0
ATR0326G025 Amborella trichopoda HOM05D007646 ORTHO05D004022 9.6e-08 60.1 77 35.1
FvH4_4g24890 Fragaria vesca HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 36.7
FAN07G2610 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 36.7
FAN12G1679 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 36.7
FAN17G0138 Fragaria x ananassa HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 36.7
RcHm_v2.0_Chr3g0493581 Rosa chinensis HOM05D007646 ORTHO05D004022 1.2e-07 59.7 79 36.7
SMO270G0036 Selaginella moellendorffii HOM05D007646 ORTHO05D004022 1.6e-07 59.3 79 34.2
PSO017G6311 Papaver somniferum HOM05D007646 ORTHO05D004022 2.1e-07 58.9 77 35.1
A07p19560 Brassica napus HOM05D007646 ORTHO05D004022 2.8e-07 58.5 102 33.3
GSVIVG01030896001 Vitis vinifera HOM05D007646 ORTHO05D004022 2.8e-07 58.5 83 34.9
CDE06G1656 Ceratophyllum demersum HOM05D007646 ORTHO05D004022 4.7e-07 57.8 79 35.4
EL10Ac2g04503 Beta vulgaris HOM05D007646 ORTHO05D004022 6.2e-07 57.4 79 35.4
C06p17970 Brassica napus HOM05D007646 ORTHO05D004022 8.1e-07 57.0 107 29.0
TWI77G0633 Tripterygium wilfordii HOM05D007646 ORTHO05D004022 1.8e-06 55.8 83 33.7
COL.COLO4_27123 Corchorus olitorius HOM05D003498 ORTHO05D004191 2.4e-06 55.5 70 38.6
Cre13.g605700 Chlamydomonas reinhardtii HOM05D007646 ORTHO05D004022 3.1e-06 55.1 86 34.9
Nitab4.5_0000036g0620 Nicotiana tabacum HOM05D007646 ORTHO05D004022 5.2e-06 54.3 79 36.7


User provided reference genes

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