Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 3.6e-128 461.8 281 100.0
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 8.3e-40 168.3 147 60.5
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.1e-38 163.7 147 56.5
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 3.5e-38 162.9 179 51.4
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 3.9e-37 159.5 149 56.4
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 6.6e-37 158.7 150 57.3
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 1.5e-36 157.5 145 55.9
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.6e-35 154.1 180 50.0
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.6e-35 154.1 152 56.6
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.8e-35 153.3 153 54.9
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 4.7e-35 152.5 148 56.8
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.4e-34 151.0 178 50.6
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.4e-34 151.0 178 50.6
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.8e-34 150.6 236 41.9
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 2.4e-34 150.2 142 54.2
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 2.4e-34 150.2 180 51.7
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 4.0e-34 149.4 142 55.6
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 4.0e-34 149.4 149 53.7
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 4.0e-34 149.4 138 58.0
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 4.0e-34 149.4 187 52.4
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 5.2e-34 149.1 168 51.8
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 8.9e-34 148.3 138 58.7
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 8.9e-34 148.3 150 54.0
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.2e-33 147.9 150 56.0
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 1.5e-33 147.5 154 52.6
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 2.6e-33 146.7 199 45.2
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.6e-33 146.7 268 41.4
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 9.9e-33 144.8 229 42.8
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 2.2e-32 143.7 155 53.5
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 6.4e-32 142.1 179 50.3
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 6.4e-32 142.1 229 41.0
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 8.4e-32 141.7 144 52.8
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.1e-31 141.4 148 54.1
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.1e-31 141.4 156 51.9
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.4e-31 141.0 237 40.5
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 3.2e-31 139.8 147 47.6
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 4.1e-31 139.4 142 52.1
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 5.4e-31 139.0 142 50.7
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 9.2e-31 138.3 179 45.3
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 9.2e-31 138.3 144 52.8
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 2.1e-30 137.1 148 50.7
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 2.1e-30 137.1 147 46.9
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 2.7e-30 136.7 156 49.4
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 2.7e-30 136.7 138 55.1
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 4.6e-30 136.0 167 48.5
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 7.8e-30 135.2 139 51.8
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 1.0e-29 134.8 146 50.0
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 1.0e-29 134.8 146 50.7
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.3e-29 134.4 151 49.0
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 2.3e-29 133.7 181 46.4
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 2.3e-29 133.7 179 45.3
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 3.0e-29 133.3 141 48.2
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 3.9e-29 132.9 141 50.4
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 3.9e-29 132.9 141 50.4
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 3.9e-29 132.9 141 49.6
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 3.9e-29 132.9 142 50.0
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 3.9e-29 132.9 142 50.0
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 3.9e-29 132.9 142 52.1
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 6.6e-29 132.1 146 50.0
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 8.7e-29 131.7 141 49.6
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.1e-28 131.3 142 52.8
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 1.1e-28 131.3 184 44.0
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 1.1e-28 131.3 142 51.4
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.1e-28 131.3 146 50.0
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.5e-28 131.0 180 43.9
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 3.3e-28 129.8 140 50.0
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 3.3e-28 129.8 140 53.6
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 4.3e-28 129.4 182 43.4
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 4.3e-28 129.4 141 47.5
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 5.6e-28 129.0 141 47.5
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 7.3e-28 128.6 142 49.3
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 7.3e-28 128.6 176 42.6
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 9.6e-28 128.3 147 49.7
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 4.0e-26 122.9 138 48.6
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 3.5e-22 109.8 141 40.4
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 6.0e-22 109.0 180 39.4
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.0e-21 108.2 133 45.9
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.1e-20 104.8 151 39.1
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.1e-20 104.8 138 41.3
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.1e-20 104.8 138 42.0
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 2.5e-20 103.6 141 37.6
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 2.5e-20 103.6 150 38.7
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 4.3e-20 102.8 142 41.5
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 4.3e-20 102.8 146 37.7
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 5.6e-20 102.4 143 39.9
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 9.6e-20 101.7 142 38.7
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 9.6e-20 101.7 142 38.7
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.1e-19 100.5 142 38.7
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 3.6e-19 99.8 142 38.7
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.8e-19 99.4 158 38.0
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 4.8e-19 99.4 150 36.0
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 4.8e-19 99.4 142 40.1
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.1e-18 98.2 151 38.4
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.1e-18 98.2 150 36.0
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 1.4e-18 97.8 143 36.4
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.8e-18 97.4 140 39.3
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 2.4e-18 97.1 143 38.5
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 3.1e-18 96.7 151 37.7
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 3.1e-18 96.7 151 37.7
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 4.0e-18 96.3 143 34.3
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 4.0e-18 96.3 143 38.5
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 5.3e-18 95.9 142 38.0
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.5e-17 94.4 143 34.3
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 2.0e-17 94.0 151 35.8
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 2.0e-17 94.0 151 35.8
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.4e-17 93.2 181 32.6
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 1.7e-16 90.9 106 51.9
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.2e-16 90.5 142 38.0
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 2.9e-16 90.1 151 33.1
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 3.8e-16 89.7 143 35.0
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.4e-15 87.8 143 36.4
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.9e-15 87.4 143 35.7
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 7.1e-15 85.5 106 44.3
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 9.3e-15 85.1 145 36.6
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 9.3e-15 85.1 145 36.6
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.2e-14 84.7 171 29.2
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 2.1e-14 84.0 133 34.6
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 2.1e-14 84.0 138 37.0
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.7e-14 83.6 138 35.5
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.7e-14 83.6 143 34.3
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 4.6e-14 82.8 147 35.4
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 6.0e-14 82.4 151 29.8
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 6.0e-14 82.4 154 30.5
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 6.0e-14 82.4 151 29.8
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 6.0e-14 82.4 154 30.5
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 6.0e-14 82.4 151 29.8
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 6.0e-14 82.4 131 38.2
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 7.9e-14 82.0 139 34.5
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 1.0e-13 81.6 151 29.8
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.3e-13 81.3 174 30.5
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.8e-13 80.9 147 32.7
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 2.3e-13 80.5 174 29.9
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 3.9e-13 79.7 86 50.0
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 1.9e-12 77.4 148 35.1
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 1.9e-12 77.4 135 35.6
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 2.1e-11 73.9 153 28.1
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 3.7e-11 73.2 160 28.8
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 3.7e-11 73.2 160 28.8
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 3.7e-11 73.2 160 28.8
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 3.7e-11 73.2 133 32.3
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 4.8e-11 72.8 160 28.8
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 4.8e-11 72.8 160 28.8
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 4.8e-11 72.8 139 30.9
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 6.2e-11 72.4 134 30.6
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 6.2e-11 72.4 154 29.2
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 1.1e-10 71.6 138 32.6
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.4e-10 70.5 105 37.1
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 6.9e-10 68.9 157 28.0
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 9.0e-10 68.6 139 29.5
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 9.0e-10 68.6 142 33.8
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.0e-09 67.4 104 33.7
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 4.5e-09 66.2 99 37.4
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 1.3e-08 64.7 102 31.4
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 6.4e-08 62.4 90 36.7
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 3.2e-07 60.1 140 28.6
SMO290G0002 Selaginella moellendorffii HOM05D005423 ORTHO05D006223 2.7e-06 57.0 106 32.1


User provided reference genes

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