Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 0.0e+00 1119.0 646 100.0
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 3.5e-126 456.4 675 51.4
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 7.9e-126 455.3 674 52.5
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.9e-87 327.8 670 44.5
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.7e-57 226.1 676 36.5
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 3.3e-55 220.7 678 40.3
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 9.5e-55 219.2 674 35.9
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.0e-53 214.2 350 50.3
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 7.8e-49 199.5 437 39.8
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.0e-48 199.1 742 32.6
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 5.0e-48 196.8 713 34.5
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 2.8e-46 191.0 367 43.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 1.4e-45 188.7 320 45.9
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 6.4e-43 179.9 739 31.3
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.9e-39 168.3 730 30.7
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 2.0e-36 158.3 838 27.0
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 2.9e-35 154.5 234 50.0
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.9e-34 151.8 828 29.1
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 7.1e-34 149.8 772 29.4
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.6e-33 147.1 828 28.9
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 4.6e-33 147.1 737 28.5
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 6.0e-33 146.7 234 41.9
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 7.8e-33 146.4 712 28.9
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 3.0e-32 144.4 726 28.9
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 1.1e-31 142.5 735 29.3
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.5e-31 142.1 299 41.8
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.9e-31 141.7 331 39.9
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 2.5e-31 141.4 130 60.8
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 5.6e-31 140.2 702 33.3
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 9.5e-31 139.4 311 42.4
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 8.1e-30 136.3 699 28.2
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.8e-29 135.2 498 32.9
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.0e-28 131.7 790 26.8
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 4.4e-28 130.6 316 39.2
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 9.9e-28 129.4 401 34.9
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 9.9e-28 129.4 756 27.1
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.3e-27 129.0 296 38.5
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.3e-27 129.0 316 38.9
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 3.8e-27 127.5 487 32.0
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 1.4e-26 125.6 716 27.2
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.2e-25 122.5 320 37.5
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 4.6e-25 120.6 291 39.2
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 6.0e-25 120.2 225 40.0
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 7.8e-25 119.8 385 33.2
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.0e-24 119.4 335 34.6
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 3.9e-24 117.5 784 28.2
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 3.9e-24 117.5 351 35.0
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 8.6e-24 116.3 335 34.3
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.1e-23 115.9 306 38.6
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.1e-23 115.9 192 45.8
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 1.9e-23 115.2 182 47.3
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.9e-23 115.2 293 36.2
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 2.5e-23 114.8 314 36.6
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 3.3e-23 114.4 278 38.1
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 7.3e-23 113.2 190 45.8
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 9.6e-23 112.8 408 31.9
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 2.1e-22 111.7 267 37.5
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 2.8e-22 111.3 305 35.1
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.8e-22 111.3 385 30.4
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 6.2e-22 110.2 303 33.7
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 6.2e-22 110.2 242 39.7
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 6.2e-22 110.2 303 33.7
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-21 109.4 375 32.8
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-21 109.4 375 32.8
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.1e-21 109.4 161 50.9
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 2.4e-21 108.2 402 31.8
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 2.4e-21 108.2 673 28.1
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 4.0e-21 107.5 416 31.0
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 8.9e-21 106.3 422 33.4
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 2.6e-20 104.8 528 29.9
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 2.6e-20 104.8 171 42.7
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 2.6e-20 104.8 171 42.7
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.6e-20 104.8 158 47.5
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.6e-20 104.8 697 26.5
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.4e-20 104.4 429 32.9
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.4e-20 104.4 470 32.6
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 4.4e-20 104.0 264 39.8
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 4.4e-20 104.0 465 29.9
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.7e-19 102.1 658 28.7
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 2.2e-19 101.7 304 33.2
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 4.9e-19 100.5 658 26.9
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 4.9e-19 100.5 457 30.2
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.9e-19 100.5 473 29.2
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 4.9e-19 100.5 382 31.4
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 4.9e-19 100.5 420 30.7
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 6.4e-19 100.1 538 29.2
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 6.4e-19 100.1 693 26.0
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 6.4e-19 100.1 401 30.2
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.1e-18 99.4 704 27.0
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 2.4e-18 98.2 364 33.0
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 4.2e-18 97.4 693 26.7
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 4.2e-18 97.4 794 25.9
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 7.1e-18 96.7 309 34.6
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 7.1e-18 96.7 422 30.8
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.6e-17 95.5 470 28.3
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 4.6e-17 94.0 443 30.0
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 4.6e-17 94.0 238 32.8
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 6.0e-17 93.6 666 27.6
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.3e-16 92.4 440 29.5
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 1.3e-16 92.4 343 31.8
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.3e-16 92.4 712 30.2
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 1.7e-16 92.0 665 27.7
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-16 91.7 688 24.1
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.0e-16 91.3 431 29.5
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 5.1e-16 90.5 288 34.4
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 8.7e-16 89.7 658 29.2
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.1e-15 89.4 294 30.3
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 1.1e-15 89.4 408 30.4
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.1e-15 89.4 456 29.6
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.9e-15 88.6 762 25.9
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.5e-15 88.2 413 30.0
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 7.3e-15 86.7 696 25.6
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.3e-14 85.9 470 29.1
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 3.6e-14 84.3 781 25.4
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 4.8e-14 84.0 376 29.3
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 8.1e-14 83.2 804 24.8
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 1.4e-13 82.4 384 29.4
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 3.1e-13 81.3 437 28.6
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 1.2e-12 79.3 361 31.3
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 1.2e-12 79.3 268 33.2
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.0e-12 78.6 443 28.0
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 2.0e-12 78.6 469 26.9
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.3e-11 75.9 366 29.2
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 3.8e-11 74.3 333 29.7
FAN24G2560 Fragaria x ananassa HOM05D012506 ORTHO05D046285 6.4e-11 73.6 145 40.0
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 1.9e-10 72.0 326 30.7
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 3.2e-10 71.2 357 31.7
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 3.2e-10 71.2 319 30.7
FvH4_2g06700 Fragaria vesca HOM05D012506 ORTHO05D003557 1.6e-09 68.9 101 45.5
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 3.5e-09 67.8 304 31.6
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 3.5e-09 67.8 413 27.4
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 3.9e-08 64.3 366 28.4
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 3.9e-08 64.3 336 28.3
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 6.7e-08 63.5 419 28.2
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 8.7e-08 63.2 401 28.7
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 1.5e-07 62.4 322 31.4
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 2.5e-07 61.6 416 27.6
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 4.3e-07 60.8 57 56.1
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 9.6e-07 59.7 88 44.3
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 2.8e-06 58.2 39 66.7
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 3.7e-06 57.8 103 40.8
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 8.1e-06 56.6 37 70.3


User provided reference genes

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