Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 1.5e-250 869.0 416 100.0
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 8.7e-203 710.3 434 81.8
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.0e-183 646.0 434 73.7
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 2.2e-153 546.2 396 71.2
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 7.7e-151 537.7 446 62.6
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 9.5e-149 530.8 370 71.1
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 1.8e-147 526.6 450 61.6
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 2.0e-143 513.1 367 69.8
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 3.9e-142 508.8 356 72.2
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 3.3e-141 505.8 440 61.6
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 1.2e-140 503.8 392 65.6
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 3.6e-140 502.3 374 66.8
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.0e-139 500.7 428 62.4
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 5.2e-139 498.4 450 59.8
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.5e-138 496.9 336 71.4
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 2.0e-138 496.5 341 72.1
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.4e-138 495.7 334 71.9
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 7.5e-138 494.6 324 74.7
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 7.5e-138 494.6 332 73.5
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 9.8e-138 494.2 367 67.3
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.2e-137 493.0 334 70.7
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 2.9e-137 492.7 436 59.9
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 6.4e-137 491.5 366 66.4
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 1.9e-136 490.0 322 73.6
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.2e-135 487.3 313 75.4
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 3.0e-134 482.6 336 70.5
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 3.0e-134 482.6 410 61.7
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 6.6e-134 481.5 323 73.1
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 8.6e-134 481.1 329 72.6
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.9e-133 479.9 326 71.5
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 3.3e-133 479.2 351 67.5
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 3.6e-132 475.7 297 77.1
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 6.2e-132 474.9 373 64.9
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 1.1e-131 474.2 341 68.6
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 1.1e-131 474.2 372 63.4
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 2.3e-131 473.0 345 69.3
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 5.2e-131 471.9 344 68.9
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 8.9e-131 471.1 310 71.9
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 2.0e-130 469.9 384 61.5
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 2.0e-130 469.9 355 66.5
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 2.0e-130 469.9 346 67.9
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 2.6e-130 469.5 329 70.5
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 3.4e-130 469.2 316 70.9
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 4.4e-130 468.8 357 66.7
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 7.5e-130 468.0 330 70.0
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 7.5e-130 468.0 358 66.2
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 9.8e-130 467.6 330 70.0
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 9.8e-130 467.6 330 70.0
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 8.3e-129 464.5 326 70.2
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 1.4e-128 463.8 346 66.8
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 4.1e-128 462.2 351 65.8
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 5.4e-128 461.8 346 66.8
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 7.1e-128 461.5 378 63.2
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 7.1e-128 461.5 354 65.5
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.6e-127 460.3 323 70.9
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 1.3e-126 457.2 332 67.5
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 2.3e-126 456.4 372 63.4
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 3.0e-126 456.1 376 59.6
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 8.6e-126 454.5 338 68.9
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 2.5e-125 453.0 387 61.2
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 7.3e-125 451.4 347 63.1
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 1.6e-124 450.3 338 65.7
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 8.1e-124 448.0 322 69.9
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 8.1e-124 448.0 338 66.0
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 8.1e-124 448.0 336 65.8
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.4e-123 447.2 336 65.2
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 9.9e-122 441.0 342 64.3
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 1.3e-121 440.7 319 64.9
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.9e-121 439.5 310 69.7
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 1.1e-120 437.6 371 61.2
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.4e-120 437.2 333 65.8
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 5.4e-120 435.3 307 66.8
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 5.4e-120 435.3 342 64.3
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 5.4e-120 435.3 338 63.9
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 1.2e-119 434.1 320 66.9
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 4.6e-119 432.2 241 84.2
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 4.6e-119 432.2 334 64.4
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 1.1e-117 427.6 370 61.1
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 9.6e-117 424.5 346 63.3
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 1.2e-116 424.1 318 64.5
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 8.9e-115 417.9 326 64.1
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 1.7e-113 413.7 320 62.5
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 1.1e-112 411.0 318 62.9
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 3.0e-110 402.9 387 55.6
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 3.3e-109 399.4 329 61.7
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 9.6e-109 397.9 347 59.4
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 9.0e-107 391.3 330 59.4
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 3.4e-106 389.4 319 63.3
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 3.1e-99 366.3 281 65.8
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 3.1e-99 366.3 317 57.1
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 1.7e-97 360.5 323 58.2
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 2.2e-97 360.1 322 57.1
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 4.2e-96 355.9 192 83.3
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.8e-94 350.5 298 60.7
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 5.1e-94 349.0 230 70.9
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.6e-92 344.0 289 59.5
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.2e-90 337.8 435 51.0
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 9.3e-88 328.2 335 51.0
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 3.5e-87 326.2 193 79.8
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 9.0e-83 311.6 279 55.2
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 9.0e-83 311.6 320 51.2
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 1.1e-72 278.1 299 46.2
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 1.9e-72 277.3 336 45.2
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 8.2e-68 261.9 227 55.9
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 9.1e-67 258.5 196 59.7
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 3.0e-62 243.4 293 48.8
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 8.2e-60 235.3 123 85.4
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 4.5e-58 229.6 196 62.2
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 5.9e-58 229.2 262 53.8
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 1.1e-56 224.9 125 76.8
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.5e-56 224.6 215 56.7
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 2.4e-51 207.2 114 86.0
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 5.2e-46 189.5 112 80.4
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.0e-38 165.2 173 54.3
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 1.5e-37 161.4 272 39.0
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 4.9e-36 156.4 99 72.7
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 1.7e-33 147.9 180 43.3
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.3e-33 147.5 173 50.9
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 4.9e-28 129.8 62 90.3
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 3.2e-27 127.1 207 40.6
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 1.6e-26 124.8 73 82.2
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 5.6e-24 116.3 314 26.8
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 5.6e-24 116.3 98 62.2
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 1.5e-21 108.2 61 88.5
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.5e-21 108.2 239 35.6
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.8e-21 106.3 196 37.8
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.7e-20 104.8 205 39.0
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 1.7e-20 104.8 63 82.5
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 2.9e-20 104.0 55 74.5
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 4.9e-20 103.2 107 55.1
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.4e-19 100.9 86 58.1
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 1.6e-15 88.2 179 35.8
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 5.8e-13 79.7 178 33.1
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 9.2e-11 72.4 138 37.7
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 4.3e-08 63.5 39 74.4
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 7.3e-08 62.8 60 51.7


User provided reference genes

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