Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 3.4e-98 361.7 188 100.0
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 1.4e-83 313.2 181 88.4
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 1.6e-79 299.7 185 82.2
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 3.0e-78 295.4 185 80.5
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 5.2e-78 294.7 185 80.5
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.0e-77 292.7 185 80.5
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.3e-77 292.0 185 80.5
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.4e-77 291.6 185 80.5
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 3.6e-71 271.9 185 76.8
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 3.6e-71 271.9 185 76.8
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 3.7e-68 261.9 179 76.0
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 1.4e-67 260.0 175 75.4
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 2.4e-67 259.2 181 75.7
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 5.4e-67 258.1 181 73.5
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 7.0e-67 257.7 181 74.0
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 1.6e-66 256.5 182 73.6
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 5.9e-66 254.6 175 74.9
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 1.7e-65 253.1 180 75.0
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 2.9e-65 252.3 180 71.7
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 5.0e-65 251.5 182 72.5
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 6.5e-65 251.1 176 72.7
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 1.1e-64 250.4 181 71.3
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 1.5e-64 250.0 172 72.7
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 1.9e-64 249.6 180 72.2
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 3.2e-64 248.8 170 74.1
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 3.2e-64 248.8 180 68.9
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 4.2e-64 248.4 176 71.0
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 9.5e-64 247.3 181 71.3
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 1.2e-63 246.9 170 75.9
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 1.2e-63 246.9 186 68.8
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 1.2e-63 246.9 182 70.9
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 1.2e-63 246.9 182 70.9
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 1.2e-63 246.9 180 68.3
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 4.7e-63 245.0 182 70.3
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 6.1e-63 244.6 180 67.2
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 1.0e-62 243.8 180 68.9
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 4.0e-62 241.9 160 76.9
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 5.2e-62 241.5 181 69.1
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 2.6e-61 239.2 174 71.3
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 9.8e-61 237.3 180 67.8
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 1.7e-60 236.5 185 65.4
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 4.9e-60 235.0 185 65.4
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 4.9e-60 235.0 185 65.4
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 8.3e-60 234.2 175 66.3
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 1.1e-59 233.8 179 65.9
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 2.4e-59 232.6 185 64.9
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 3.1e-59 232.3 174 66.1
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 3.1e-59 232.3 174 65.5
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 4.5e-58 228.4 192 63.0
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 6.6e-57 224.6 179 62.6
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 1.5e-56 223.4 177 65.0
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 2.5e-56 222.6 177 66.1
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 4.3e-56 221.9 170 63.5
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 5.6e-56 221.5 159 72.3
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 5.6e-56 221.5 170 63.5
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 1.2e-55 220.3 176 65.3
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 1.2e-55 220.3 178 62.4
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 1.6e-55 219.9 176 64.8
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 2.1e-55 219.5 159 69.2
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 2.8e-55 219.2 185 60.5
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 6.1e-55 218.0 171 65.5
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 2.3e-54 216.1 168 66.1
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 2.0e-53 213.0 175 60.0
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 2.6e-53 212.6 170 63.5
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 3.4e-53 212.2 170 62.4
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 4.4e-53 211.8 155 68.4
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 9.8e-53 210.7 181 59.7
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 9.8e-53 210.7 159 63.5
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 9.8e-53 210.7 180 60.0
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 2.9e-52 209.1 181 57.5
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 2.9e-52 209.1 181 57.5
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 1.4e-51 206.8 180 58.9
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 1.8e-51 206.5 181 56.4
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 1.8e-51 206.5 156 67.9
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 1.8e-51 206.5 176 59.1
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 2.4e-51 206.1 175 58.3
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 5.4e-51 204.9 154 66.9
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 5.4e-51 204.9 140 72.1
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 7.0e-51 204.5 175 57.1
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 1.6e-50 203.4 171 57.3
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 1.6e-50 203.4 169 59.2
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 2.0e-50 203.0 175 58.3
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 3.5e-50 202.2 175 57.1
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 4.6e-50 201.8 179 55.3
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 1.1e-48 197.2 170 59.4
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 4.7e-47 191.8 192 56.8
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 4.0e-46 188.7 192 56.2
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 8.9e-46 187.6 176 56.2
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 7.5e-45 184.5 103 86.4
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 2.2e-44 183.0 133 70.7
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 1.4e-43 180.3 132 65.9
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 2.0e-42 176.4 135 66.7
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 3.5e-42 175.6 139 63.3
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 1.9e-40 169.9 189 48.7
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 9.5e-40 167.5 130 61.5
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 2.8e-39 166.0 184 48.4
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 2.8e-39 166.0 177 50.3
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 4.7e-39 165.2 123 65.0
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 6.2e-39 164.9 130 60.8
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 4.0e-38 162.2 131 63.4
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 1.7e-36 156.8 197 45.2
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 1.6e-31 140.2 181 42.5
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 8.1e-31 137.9 103 68.9
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 2.3e-25 119.8 152 47.4
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 1.1e-24 117.5 132 49.2
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 1.5e-24 117.1 175 41.7
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 1.3e-20 104.0 170 35.9
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 7.1e-19 98.2 181 38.7
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 1.2e-18 97.4 153 39.9
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 1.1e-16 90.9 107 47.7
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 5.6e-16 88.6 151 38.4
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 3.6e-15 85.9 157 33.1
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 1.2e-13 80.9 132 37.9
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 1.1e-11 74.3 48 68.8
Zm00001eb177740 Zea mays HOM05D002799 ORTHO05D008889 6.9e-06 55.1 43 55.8


User provided reference genes

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