Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 3.1e-66 255.0 127 100.0
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.1e-52 209.9 125 80.8
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 5.1e-37 157.9 96 76.0
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.5e-36 156.4 130 65.4
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 7.4e-36 154.1 129 66.7
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 9.6e-36 153.7 131 64.9
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-35 153.3 130 65.4
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-35 153.3 130 65.4
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 2.8e-35 152.1 130 65.4
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 8.1e-35 150.6 133 61.7
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 1.4e-34 149.8 126 63.5
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.4e-34 149.8 130 63.8
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 1.4e-34 149.8 132 63.6
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 2.4e-34 149.1 127 66.1
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 7.6e-33 144.1 123 65.0
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.7e-32 142.9 132 62.1
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.7e-32 142.9 125 61.6
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 2.2e-32 142.5 128 60.2
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 2.9e-32 142.1 132 58.3
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 3.8e-32 141.7 130 63.1
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.1e-31 140.2 128 62.5
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.9e-31 139.4 126 57.9
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.4e-31 139.0 123 61.0
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.6e-30 136.3 129 60.5
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 2.7e-30 135.6 128 57.8
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 6.0e-30 134.4 138 55.1
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 7.9e-30 134.0 126 57.1
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 7.9e-30 134.0 127 59.1
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 3.0e-29 132.1 127 55.1
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 3.9e-29 131.7 137 57.7
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 5.1e-29 131.3 131 58.0
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 6.7e-29 131.0 132 58.3
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.1e-28 130.2 132 56.1
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.5e-28 129.8 127 59.8
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.5e-28 129.8 132 56.8
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.9e-28 129.4 132 58.3
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.5e-28 129.0 126 57.9
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.5e-28 129.0 134 53.0
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.5e-28 129.0 128 57.8
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 3.3e-28 128.6 129 58.1
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.3e-28 128.6 124 58.1
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.3e-28 128.3 127 57.5
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 4.3e-28 128.3 115 57.4
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 7.4e-28 127.5 129 58.9
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 7.4e-28 127.5 127 58.3
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 9.6e-28 127.1 128 57.8
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 9.6e-28 127.1 130 57.7
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-27 126.7 128 58.6
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 1.6e-27 126.3 135 54.1
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.6e-27 126.3 137 54.0
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.1e-27 125.9 126 56.3
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.1e-27 125.9 127 56.7
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.8e-27 125.6 129 55.0
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.8e-27 125.6 130 57.7
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 3.7e-27 125.2 126 54.0
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 4.8e-27 124.8 128 56.2
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.8e-27 124.8 130 56.2
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 8.2e-27 124.0 129 53.5
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 1.1e-26 123.6 129 57.4
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 1.1e-26 123.6 129 57.4
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.4e-26 122.5 129 54.3
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.1e-26 122.1 127 53.5
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 3.1e-26 122.1 125 52.0
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 4.0e-26 121.7 123 56.1
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.0e-26 121.7 125 53.6
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 4.0e-26 121.7 131 52.7
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 6.9e-26 120.9 132 54.5
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 9.0e-26 120.6 130 53.8
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 9.0e-26 120.6 129 55.0
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.6e-25 119.0 128 56.2
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 4.5e-25 118.2 134 54.5
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 5.8e-25 117.9 89 62.9
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 5.8e-25 117.9 126 51.6
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.0e-24 117.1 126 57.1
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.3e-24 116.7 126 52.4
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.2e-24 115.9 128 55.5
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.2e-24 115.9 123 54.5
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 2.9e-24 115.5 128 55.5
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 3.8e-24 115.2 128 50.0
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 3.8e-24 115.2 123 52.0
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 6.5e-24 114.4 126 54.0
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 6.5e-24 114.4 90 57.8
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 8.4e-24 114.0 92 64.1
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.1e-23 113.6 135 51.1
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.9e-23 112.8 131 52.7
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 3.2e-23 112.1 136 52.2
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 3.2e-23 112.1 124 48.4
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 4.2e-23 111.7 126 50.0
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 4.2e-23 111.7 124 51.6
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 5.5e-23 111.3 97 58.8
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 7.1e-23 110.9 126 52.4
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 7.1e-23 110.9 127 54.3
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.1e-22 109.4 132 50.0
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.1e-22 109.4 132 50.0
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.1e-22 109.4 132 50.0
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.1e-22 109.4 132 50.0
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.6e-22 108.2 134 52.2
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 6.0e-22 107.8 89 61.8
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 6.0e-22 107.8 127 49.6
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.3e-21 106.7 129 49.6
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.3e-21 106.7 90 61.1
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.3e-21 106.7 90 61.1
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.8e-21 106.3 120 46.7
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.0e-21 105.5 122 46.7
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 3.0e-21 105.5 119 52.9
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.9e-21 105.1 124 51.6
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 5.1e-21 104.8 89 60.7
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 6.7e-21 104.4 133 50.4
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 6.7e-21 104.4 99 57.6
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 6.7e-21 104.4 88 63.6
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 8.7e-21 104.0 126 47.6
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 8.7e-21 104.0 99 56.6
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 8.7e-21 104.0 101 59.4
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 8.7e-21 104.0 127 50.4
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.9e-20 102.8 131 44.3
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.5e-20 102.4 116 46.6
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 2.5e-20 102.4 131 44.3
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.7e-20 101.3 126 49.2
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 5.7e-20 101.3 126 47.6
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 7.4e-20 100.9 135 47.4
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.3e-19 100.1 129 44.2
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.3e-19 100.1 128 42.2
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.6e-19 99.8 117 48.7
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 2.2e-19 99.4 125 48.0
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 2.2e-19 99.4 88 59.1
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 2.8e-19 99.0 131 42.0
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 2.8e-19 99.0 131 42.0
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 2.8e-19 99.0 110 47.3
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 3.7e-19 98.6 126 44.4
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 3.7e-19 98.6 131 48.1
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.8e-19 98.2 168 40.5
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 6.3e-19 97.8 125 48.8
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 6.3e-19 97.8 134 50.7
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.1e-18 97.1 124 43.5
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-18 97.1 125 48.0
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.1e-18 97.1 123 43.9
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.1e-18 95.5 134 49.3
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 4.1e-18 95.1 126 42.9
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.1e-18 95.1 119 42.9
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.1e-18 95.1 91 54.9
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 6.9e-18 94.4 127 45.7
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 6.9e-18 94.4 125 40.8
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 9.0e-18 94.0 95 48.4
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 9.0e-18 94.0 125 41.6
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 9.0e-18 94.0 125 41.6
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 2.0e-17 92.8 127 43.3
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 2.0e-17 92.8 125 44.0
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 2.0e-17 92.8 137 45.3
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 2.6e-17 92.4 125 43.2
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.6e-17 92.4 123 45.5
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.6e-17 92.4 123 48.0
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.6e-17 92.4 134 44.8
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 2.6e-17 92.4 128 50.8
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 4.5e-17 91.7 126 43.7
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 4.5e-17 91.7 126 43.7
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 5.9e-17 91.3 126 43.7
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.9e-17 91.3 123 49.6
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 7.6e-17 90.9 126 43.7
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 5.0e-16 88.2 90 50.0
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 6.5e-16 87.8 126 43.7
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 8.5e-16 87.4 112 47.3
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.4e-15 86.7 83 53.0
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.4e-15 86.7 117 48.7
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.9e-15 86.3 123 43.9
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 2.5e-15 85.9 117 39.3
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 2.5e-15 85.9 128 39.8
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 5.5e-15 84.7 115 43.5
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 7.2e-15 84.3 120 41.7
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.2e-14 83.6 84 51.2
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.2e-14 83.6 118 41.5
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 1.6e-14 83.2 90 47.8
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.1e-14 82.8 90 47.8
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.1e-14 82.8 90 51.1
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 3.6e-14 82.0 127 40.2
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.6e-14 82.0 115 43.5
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.0e-13 80.5 90 44.4
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.8e-13 79.7 109 49.5
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.9e-12 76.3 125 43.2
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.9e-12 76.3 102 42.2
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 2.5e-12 75.9 80 51.2
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 3.3e-12 75.5 111 44.1
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.1e-10 68.9 45 66.7
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.0e-09 66.2 96 40.6
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.7e-09 64.3 92 40.2
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.7e-09 64.3 88 42.0
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.5e-08 60.8 80 46.2
Lsat_1_v5_gn_0_9440 Lactuca sativa HOM05D003592 ORTHO05D029303 6.1e-06 54.7 113 33.6


User provided reference genes

Program Settings