Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 2.3e-265 918.3 444 100.0
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 7.1e-203 710.7 446 79.4
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 1.8e-201 706.1 441 77.8
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.9e-196 688.7 451 75.4
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.9e-196 688.0 451 75.2
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.5e-195 685.6 451 74.7
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 5.7e-192 674.5 442 74.7
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 9.7e-192 673.7 442 74.4
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.0e-185 653.7 435 73.6
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 6.7e-169 597.8 457 65.9
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 5.0e-164 581.6 479 60.5
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 5.2e-161 571.6 470 62.6
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 8.3e-159 564.3 446 63.0
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 8.8e-153 544.3 463 60.3
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 9.8e-152 540.8 453 60.5
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.3e-151 540.4 442 60.2
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 1.3e-151 540.4 442 60.2
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 4.1e-150 535.4 450 59.1
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 2.0e-149 533.1 469 58.4
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 4.5e-149 531.9 458 59.4
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 1.3e-148 530.4 458 59.4
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 7.2e-147 524.6 456 58.1
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 6.1e-146 521.5 447 60.2
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 8.0e-146 521.2 447 59.3
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 2.3e-145 519.6 460 55.9
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 3.0e-145 519.2 461 59.4
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 2.6e-144 516.2 472 58.3
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 2.6e-144 516.2 449 59.0
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 7.5e-144 514.6 460 56.5
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 9.8e-144 514.2 450 57.6
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 2.8e-143 512.7 446 58.3
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 2.8e-143 512.7 462 57.1
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 6.3e-143 511.5 461 55.3
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 1.8e-142 510.0 446 58.5
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 2.4e-142 509.6 453 55.6
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 4.1e-142 508.8 417 60.9
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 9.2e-142 507.7 458 58.7
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 8.6e-140 501.1 300 79.3
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 8.9e-137 491.1 446 57.6
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 4.4e-136 488.8 472 54.9
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 1.7e-135 486.9 445 56.2
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 1.7e-135 486.9 445 56.2
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 1.1e-134 484.2 420 56.2
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 1.4e-134 483.8 472 54.7
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 4.1e-134 482.3 461 56.2
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 7.0e-134 481.5 451 56.5
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 2.0e-133 479.9 427 57.1
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 8.0e-130 468.0 370 61.6
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 4.4e-128 462.2 459 54.7
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 4.9e-127 458.8 458 51.7
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 6.4e-127 458.4 456 53.7
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 8.3e-127 458.0 456 52.2
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 7.0e-126 454.9 453 53.9
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 7.0e-126 454.9 448 52.7
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 9.2e-126 454.5 458 52.2
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 3.5e-125 452.6 460 53.5
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 3.0e-124 449.5 459 50.3
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 8.6e-124 448.0 451 51.7
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 5.6e-123 445.3 456 50.9
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 7.3e-123 444.9 461 49.7
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 4.7e-122 442.2 459 49.5
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 1.5e-120 437.2 396 56.6
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.5e-120 437.2 449 53.0
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 4.4e-120 435.6 460 52.6
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 7.5e-120 434.9 368 57.6
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 7.5e-120 434.9 447 52.3
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 1.7e-119 433.7 457 49.9
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 2.2e-119 433.3 464 51.5
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 2.9e-119 433.0 382 56.8
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 2.9e-119 433.0 459 51.9
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 1.4e-118 430.6 447 52.1
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 2.4e-118 429.9 460 51.3
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 7.1e-118 428.3 451 51.0
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 9.2e-118 427.9 385 55.8
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.3e-116 423.3 498 47.2
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 1.1e-115 421.0 441 51.0
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 2.5e-115 419.9 449 50.6
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 3.6e-114 416.0 365 55.6
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 6.2e-114 415.2 368 54.9
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.4e-113 414.1 446 53.6
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 1.4e-113 414.1 457 50.1
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 2.0e-112 410.2 440 50.7
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.4e-112 409.1 485 46.8
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 3.8e-111 406.0 443 48.8
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.9e-111 405.6 451 50.8
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 3.2e-110 402.9 365 56.2
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 2.1e-109 400.2 391 54.2
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 2.1e-109 400.2 448 49.8
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 1.6e-106 390.6 452 47.6
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 4.8e-106 389.0 449 47.9
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 1.8e-105 387.1 447 46.3
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 6.4e-103 378.6 446 46.4
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 4.2e-102 375.9 322 60.9
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 6.6e-100 368.6 449 47.9
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 1.9e-99 367.1 448 46.2
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 1.9e-99 367.1 447 47.9
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 3.3e-99 366.3 445 47.9
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 2.4e-97 360.1 447 47.7
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 7.6e-96 355.1 376 50.5
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 2.4e-94 350.1 448 44.6
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 4.2e-94 349.4 361 49.6
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.5e-91 340.9 336 54.2
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 1.5e-88 330.9 535 39.8
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 2.6e-88 330.1 427 46.6
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 3.1e-81 306.6 450 42.0
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 4.5e-80 302.8 439 39.6
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 1.9e-78 297.4 270 56.3
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.9e-78 297.4 325 48.0
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.2e-77 294.7 556 33.6
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.5e-75 287.7 438 42.2
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 9.7e-75 285.0 349 46.4
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.6e-74 284.3 405 39.8
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.9e-71 273.5 430 36.3
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 9.4e-70 268.5 162 78.4
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 4.6e-69 266.2 494 34.4
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 2.2e-66 257.3 578 31.3
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 2.8e-66 256.9 350 41.1
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 9.1e-65 251.9 384 41.1
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 2.2e-58 230.7 244 50.0
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 3.8e-55 219.9 204 57.8
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 4.2e-46 189.9 559 26.3
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.2e-43 181.8 182 50.5
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 5.7e-43 179.5 99 83.8
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-41 172.9 134 59.0
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 2.0e-40 171.0 155 53.5
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.3e-39 168.3 155 54.2
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 1.5e-30 138.3 217 37.3
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 7.2e-30 136.0 150 50.7
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 5.7e-27 126.3 98 61.2
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 3.7e-26 123.6 155 43.9
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 5.8e-19 99.8 86 66.3
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 1.6e-13 81.6 150 36.7
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 2.1e-13 81.3 58 69.0
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 2.9e-10 70.9 38 81.6
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 5.4e-09 66.6 52 53.8


User provided reference genes

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