Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G322300 Prunus persica HOM05D003381 ORTHO05D003880 3.5e-75 285.0 160 100.0
RcHm_v2.0_Chr1g0383321 Rosa chinensis HOM05D003381 ORTHO05D003880 7.1e-36 154.5 109 84.4
FAN03G2343 Fragaria x ananassa HOM05D003381 ORTHO05D003880 1.6e-32 143.3 110 78.2
FAN10G2693 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.1e-32 142.9 110 79.1
FAN10G4285 Fragaria x ananassa HOM05D003381 ORTHO05D003880 2.1e-32 142.9 110 79.1
MD07G1303600 Malus domestica HOM05D003381 ORTHO05D003880 1.1e-31 140.6 110 80.9
MD01G1231600 Malus domestica HOM05D003381 ORTHO05D003880 1.8e-31 139.8 109 80.7
FvH4_7g33340 Fragaria vesca HOM05D003381 ORTHO05D003880 3.2e-28 129.0 110 73.6
CANSAT21G1431 Cannabis sativa HOM05D003381 ORTHO05D003880 9.9e-22 107.5 104 65.4
CAN.G303.62 Capsicum annuum HOM05D003381 ORTHO05D003880 2.9e-21 105.9 125 55.2
Nitab4.5_0007121g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 6.4e-21 104.8 98 65.3
Cc02_g00580 Coffea canephora HOM05D003381 ORTHO05D003880 1.9e-20 103.2 105 63.8
Ciclev10022951m.g Citrus clementina HOM05D003381 ORTHO05D003880 2.5e-20 102.8 84 73.8
Atru.chr12.2499 Acer truncatum HOM05D003381 ORTHO05D003880 3.2e-20 102.4 83 74.7
Atru.chr12.2523 Acer truncatum HOM05D003381 ORTHO05D003880 3.2e-20 102.4 83 74.7
Dinv17275 Davidia involucrata HOM05D003381 ORTHO05D003880 3.2e-20 102.4 90 68.9
Peaxi162Scf00007g00254 Petunia axillaris HOM05D003381 ORTHO05D003880 3.2e-20 102.4 116 56.0
Hma1.2p1_0115F.1_g055840 Hydrangea macrophylla HOM05D003381 ORTHO05D003880 5.5e-20 101.7 89 70.8
CANSAT21G0934 Cannabis sativa HOM05D003381 ORTHO05D003880 7.1e-20 101.3 102 62.7
CSS0005275 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 9.3e-20 100.9 83 74.7
CAN.G303.61 Capsicum annuum HOM05D003381 ORTHO05D003880 9.3e-20 100.9 93 68.8
Sopen03g027490 Solanum pennellii HOM05D003381 ORTHO05D003880 9.3e-20 100.9 112 58.9
Potri.012G004500 Populus trichocarpa HOM05D003381 ORTHO05D003880 1.6e-19 100.1 88 70.5
Sabra12G0000400 Salix brachista HOM05D003381 ORTHO05D003880 4.6e-19 98.6 88 69.3
Dinv29190 Davidia involucrata HOM05D003381 ORTHO05D003880 6.0e-19 98.2 85 69.4
HanXRQChr08g0225861 Helianthus annuus HOM05D003381 ORTHO05D003880 6.0e-19 98.2 109 57.8
Solyc03g096760.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 7.9e-19 97.8 109 58.7
Manes.01G002300 Manihot esculenta HOM05D003381 ORTHO05D003880 1.0e-18 97.4 95 68.4
Eucgr.K00481 Eucalyptus grandis HOM05D003381 ORTHO05D003880 1.3e-18 97.1 97 62.9
Sabra15G0000300 Salix brachista HOM05D003381 ORTHO05D003880 1.3e-18 97.1 89 68.5
AUR62005946 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.8e-18 96.7 88 65.9
PGSC0003DMG400027025 Solanum tuberosum HOM05D003381 ORTHO05D003880 3.0e-18 95.9 91 67.0
TPR.G35911 Trifolium pratense HOM05D003381 ORTHO05D003880 3.0e-18 95.9 99 66.7
Lj1g0021256 Lotus japonicus HOM05D003381 ORTHO05D003880 3.9e-18 95.5 103 63.1
PSO675G1709 Papaver somniferum HOM05D003381 ORTHO05D003880 8.7e-18 94.4 90 64.4
Sopen06g029340 Solanum pennellii HOM05D003381 ORTHO05D003880 8.7e-18 94.4 93 65.6
TAR374G1397 Trochodendron aralioides HOM05D003381 ORTHO05D003880 8.7e-18 94.4 82 69.5
Nitab4.5_0002691g0070 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.1e-17 94.0 112 55.4
Sopen03g027520 Solanum pennellii HOM05D003381 ORTHO05D003880 1.1e-17 94.0 97 60.8
PGSC0003DMG400000547 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.5e-17 93.6 112 56.2
PSO541G0132 Papaver somniferum HOM05D003381 ORTHO05D003880 1.9e-17 93.2 90 63.3
Phvul.009G040500 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 1.9e-17 93.2 101 65.3
Solyc03g096780.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.9e-17 93.2 97 60.8
Migut.F00121 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.5e-17 92.8 87 67.8
SalBow4G2332 Salvia bowleyana HOM05D003381 ORTHO05D003880 2.5e-17 92.8 91 65.9
ClCG01G000030 Citrullus lanatus HOM05D003381 ORTHO05D003880 3.3e-17 92.4 88 65.9
Ca_16840_v3 Cicer arietinum L. HOM05D003381 ORTHO05D003880 4.3e-17 92.0 82 72.0
Nitab4.5_0002691g0080 Nicotiana tabacum HOM05D003381 ORTHO05D003880 4.3e-17 92.0 112 54.5
LjContig00155g0019595 Lotus japonicus HOM05D003381 ORTHO05D003880 5.6e-17 91.7 84 65.5
MSTRG.26951 Avicennia marina HOM05D003381 ORTHO05D003880 9.6e-17 90.9 101 59.4
Medtr3g093400 Medicago truncatula HOM05D003381 ORTHO05D003880 9.6e-17 90.9 103 63.1
Potri.015G000500 Populus trichocarpa HOM05D003381 ORTHO05D003880 9.6e-17 90.9 88 63.6
HanXRQChr08g0225881 Helianthus annuus HOM05D003381 ORTHO05D003880 2.1e-16 89.7 90 63.3
Sopen03g027500 Solanum pennellii HOM05D003381 ORTHO05D003880 2.1e-16 89.7 112 53.6
PGSC0003DMG400000545 Solanum tuberosum HOM05D003381 ORTHO05D003880 2.1e-16 89.7 98 59.2
Cpa.g.sc3.189 Carica papaya HOM05D003381 ORTHO05D003880 2.8e-16 89.4 75 72.0
DCAR_010556 Daucus carota HOM05D003381 ORTHO05D003880 2.8e-16 89.4 91 64.8
HanXRQChr08g0225771 Helianthus annuus HOM05D003381 ORTHO05D003880 2.8e-16 89.4 89 62.9
HanXRQChr08g0225851 Helianthus annuus HOM05D003381 ORTHO05D003880 2.8e-16 89.4 89 62.9
unitig_60.g25635 Utricularia gibba HOM05D003381 ORTHO05D003880 2.8e-16 89.4 84 69.0
Lalb_Chr04g0252571 Lupinus albus HOM05D003381 ORTHO05D003880 3.7e-16 89.0 118 54.2
TAR375G0964 Trochodendron aralioides HOM05D003381 ORTHO05D003880 6.2e-16 88.2 91 61.5
Eucgr.K00482 Eucalyptus grandis HOM05D003381 ORTHO05D003880 8.2e-16 87.8 96 61.5
Eucgr.K00530 Eucalyptus grandis HOM05D003381 ORTHO05D003880 8.2e-16 87.8 96 61.5
Glyma.06G139300 Glycine max HOM05D003381 ORTHO05D003880 8.2e-16 87.8 101 62.4
Migut.F00967 Erythranthe guttata HOM05D003381 ORTHO05D003880 1.1e-15 87.4 88 67.0
Nitab4.5_0000115g0190 Nicotiana tabacum HOM05D003381 ORTHO05D003880 1.1e-15 87.4 109 55.0
PGSC0003DMG400000546 Solanum tuberosum HOM05D003381 ORTHO05D003880 1.1e-15 87.4 112 51.8
Psat5g070520 Pisum sativum HOM05D003381 ORTHO05D003880 1.4e-15 87.0 94 63.8
EL10Ac3g05129 Beta vulgaris HOM05D003381 ORTHO05D003880 1.8e-15 86.7 90 58.9
AUR62028119 Chenopodium quinoa HOM05D003381 ORTHO05D003880 1.8e-15 86.7 98 60.2
Lalb_Chr11g0067571 Lupinus albus HOM05D003381 ORTHO05D003880 1.8e-15 86.7 82 65.9
Oeu063749.1 Olea europaea HOM05D003381 ORTHO05D003880 1.8e-15 86.7 97 55.7
Aqoxy5G04393 Aquilegia oxysepala HOM05D003381 ORTHO05D003880 3.1e-15 85.9 128 52.3
EL10Ac3g05128 Beta vulgaris HOM05D003381 ORTHO05D003880 3.1e-15 85.9 89 64.0
Lalb_Chr08g0239391 Lupinus albus HOM05D003381 ORTHO05D003880 4.0e-15 85.5 89 64.0
AUR62005945 Chenopodium quinoa HOM05D003381 ORTHO05D003880 6.9e-15 84.7 90 61.1
Ah.13g071060 Amaranthus hybridus HOM05D003381 ORTHO05D003880 9.0e-15 84.3 89 59.6
CsaV3_5G000160 Cucumis sativus L. HOM05D003381 ORTHO05D003880 9.0e-15 84.3 89 62.9
ECA233G1855 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.5e-14 83.6 113 51.3
Lalb_Chr10g0102971 Lupinus albus HOM05D003381 ORTHO05D003880 1.5e-14 83.6 78 65.4
CSS0002942 Camellia sinensis var. sinensis HOM05D003381 ORTHO05D003880 2.0e-14 83.2 85 64.7
Migut.F00966 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.0e-14 83.2 79 67.1
Phvul.008G187900 Phaseolus vulgaris HOM05D003381 ORTHO05D003880 2.0e-14 83.2 85 58.8
Solyc03g096770.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 2.0e-14 83.2 112 51.8
Glyma.14G188300 Glycine max HOM05D003381 ORTHO05D003880 2.6e-14 82.8 99 56.6
Peaxi162Scf00815g00116 Petunia axillaris HOM05D003381 ORTHO05D003880 2.6e-14 82.8 107 56.1
Sc14g0006700 Simmondsia chinensis HOM05D003381 ORTHO05D003880 3.4e-14 82.4 103 52.4
Actinidia34289 Actinidia chinensis HOM05D003381 ORTHO05D003880 4.5e-14 82.0 81 66.7
TWI81G0266 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 5.8e-14 81.6 101 55.4
HanXRQChr16g0499781 Helianthus annuus HOM05D003381 ORTHO05D003880 7.6e-14 81.3 82 57.3
Nitab4.5_0002867g0010 Nicotiana tabacum HOM05D003381 ORTHO05D003880 7.6e-14 81.3 112 50.0
TWI81G0192 Tripterygium wilfordii HOM05D003381 ORTHO05D003880 7.6e-14 81.3 102 54.9
PSO017G3293 Papaver somniferum HOM05D003381 ORTHO05D003880 1.0e-13 80.9 86 58.1
SGA_v2.0_scaffold44G16873 Striga asiatica HOM05D003381 ORTHO05D003880 1.3e-13 80.5 86 62.8
ATR0579G061 Amborella trichopoda HOM05D003381 ORTHO05D003880 2.2e-13 79.7 94 55.3
Migut.F00119 Erythranthe guttata HOM05D003381 ORTHO05D003880 2.2e-13 79.7 78 64.1
Glyma.04G225500 Glycine max HOM05D003381 ORTHO05D003880 2.2e-13 79.7 110 59.1
Ah.13g071070 Amaranthus hybridus HOM05D003381 ORTHO05D003880 2.9e-13 79.3 83 60.2
Oeu055427.1 Olea europaea HOM05D003381 ORTHO05D003880 2.9e-13 79.3 64 70.3
SGA_v2.0_scaffold351G49675 Striga asiatica HOM05D003381 ORTHO05D003880 3.8e-13 79.0 86 61.6
Sed0013785 Sechium edule HOM05D003381 ORTHO05D003880 4.9e-13 78.6 100 52.0
Psat5g070560 Pisum sativum HOM05D003381 ORTHO05D003880 6.5e-13 78.2 82 64.6
Peaxi162Scf00685g10014 Petunia axillaris HOM05D003381 ORTHO05D003880 8.4e-13 77.8 66 66.7
Haze_00337 Corylus avellana HOM05D003381 ORTHO05D003880 1.4e-12 77.0 75 68.0
SalBow4G1643 Salvia bowleyana HOM05D003381 ORTHO05D003880 1.4e-12 77.0 77 61.0
Solyc06g072990.1 Solanum lycopersicum HOM05D003381 ORTHO05D003880 1.4e-12 77.0 93 55.9
Gohir.A08G106600 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.9e-12 76.6 94 58.5
VMungo1309G1451 Vigna mungo HOM05D003381 ORTHO05D003880 3.2e-12 75.9 101 57.4
Gohir.A08G106800 Gossypium hirsutum HOM05D003381 ORTHO05D003880 4.2e-12 75.5 94 57.4
Gorai.004G126500 Gossypium raimondii HOM05D003381 ORTHO05D003880 5.5e-12 75.1 94 57.4
Oeu017357.1 Olea europaea HOM05D003381 ORTHO05D003880 5.5e-12 75.1 112 50.0
Lsat_1_v5_gn_2_3421 Lactuca sativa HOM05D003381 ORTHO05D003880 1.2e-11 73.9 106 51.9
HPP92_008910 Vanilla planifolia HOM05D003381 ORTHO05D003880 1.2e-11 73.9 106 49.1
CAN.G65.142 Capsicum annuum HOM05D003381 ORTHO05D003880 1.6e-11 73.6 60 70.0
Gohir.D08G117900 Gossypium hirsutum HOM05D003381 ORTHO05D003880 1.6e-11 73.6 94 56.4
Gohir.D08G117850 Gossypium hirsutum HOM05D003381 ORTHO05D003880 3.5e-11 72.4 94 56.4
Gorai.004G126400 Gossypium raimondii HOM05D003381 ORTHO05D003880 3.5e-11 72.4 94 56.4
QL11p009417 Quercus lobata HOM05D003381 ORTHO05D003880 3.5e-11 72.4 88 60.2
Nn3g18090 Nelumbo nucifera HOM05D003381 ORTHO05D003880 7.9e-11 71.2 83 57.8
COL.COLO4_14402 Corchorus olitorius HOM05D003381 ORTHO05D003880 1.0e-10 70.9 54 74.1
ECA232G1694 Erigeron canadensis HOM05D003381 ORTHO05D003880 1.0e-10 70.9 70 57.1
MBI04_g09823_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 1.0e-10 70.9 113 48.7
Duzib084G1005 Durio zibethinus HOM05D003381 ORTHO05D003880 2.3e-10 69.7 95 52.6
QL09p005975 Quercus lobata HOM05D003381 ORTHO05D003880 2.3e-10 69.7 92 56.5
Lsat_1_v5_gn_8_4301 Lactuca sativa HOM05D003381 ORTHO05D003880 3.9e-10 68.9 98 50.0
Lsat_1_v5_gn_8_4241 Lactuca sativa HOM05D003381 ORTHO05D003880 1.5e-09 67.0 91 52.7
PGR142G3642 Punica granatum HOM05D003381 ORTHO05D003880 3.3e-09 65.9 95 53.7
vmacro06477 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 5.7e-09 65.1 92 53.3
CDE09G1369 Ceratophyllum demersum HOM05D001765 ORTHO05D003527 1.3e-08 63.9 90 48.9
vmacro06476 Vaccinium macrocarpon HOM05D003381 ORTHO05D003880 1.3e-08 63.9 78 57.7
COL.COLO4_14401 Corchorus olitorius HOM05D003381 ORTHO05D003880 2.2e-08 63.2 98 50.0
Peaxi162Scf00542g00013 Petunia axillaris HOM05D003381 ORTHO05D003880 2.2e-08 63.2 53 75.5
Zm00001eb220550 Zea mays HOM05D003381 ORTHO05D003880 2.8e-08 62.8 89 49.4
THA.LOC104798994 Tarenaya hassleriana HOM05D003381 ORTHO05D003880 3.7e-08 62.4 81 55.6
AT3G49570 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 4.8e-08 62.0 87 54.0
Carub.0006s2251 Capsella rubella HOM05D003381 ORTHO05D003880 4.8e-08 62.0 81 54.3
Thhalv10005368m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 4.8e-08 62.0 96 53.1
Aa31LG11G3910 Aethionema arabicum HOM05D003381 ORTHO05D003880 6.3e-08 61.6 86 53.5
Eucgr.K00529 Eucalyptus grandis HOM05D003381 ORTHO05D003880 6.3e-08 61.6 85 52.9
AL5G29410 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 8.2e-08 61.2 87 54.0
AT5G24660 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 8.2e-08 61.2 100 50.0
CDE04G0378 Ceratophyllum demersum HOM05D003381 ORTHO05D003880 1.1e-07 60.8 58 62.1
AL6G36270 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 1.8e-07 60.1 100 50.0
Carub.0005s1591 Capsella rubella HOM05D003381 ORTHO05D003880 1.8e-07 60.1 98 50.0
Sp2g22730 Schrenkiella parvula HOM05D003381 ORTHO05D003880 1.8e-07 60.1 96 51.0
Thhalv10010815m.g Eutrema salsugineum HOM05D003381 ORTHO05D003880 2.4e-07 59.7 89 53.9
Zm00001eb043810 Zea mays HOM05D003381 ORTHO05D003880 2.4e-07 59.7 88 47.7
AL5G29420 Arabidopsis lyrata HOM05D003381 ORTHO05D003880 3.1e-07 59.3 90 52.2
Carub.0005s1590 Capsella rubella HOM05D003381 ORTHO05D003880 4.1e-07 58.9 87 52.9
Carub.0006s2252 Capsella rubella HOM05D003381 ORTHO05D003880 4.1e-07 58.9 112 45.5
CARHR188800 Cardamine hirsuta HOM05D003381 ORTHO05D003880 4.1e-07 58.9 96 47.9
SEGI_37007 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 4.1e-07 58.9 96 44.8
Sp5g12530 Schrenkiella parvula HOM05D003381 ORTHO05D003880 5.3e-07 58.5 89 48.3
BcaNung02004 Brassica carinata HOM05D003381 ORTHO05D003880 6.9e-07 58.2 100 48.0
A06p35480 Brassica napus HOM05D003381 ORTHO05D003880 6.9e-07 58.2 100 48.0
C07p43060 Brassica napus HOM05D003381 ORTHO05D003880 6.9e-07 58.2 100 48.0
BolC7t44833H Brassica oleracea HOM05D003381 ORTHO05D003880 6.9e-07 58.2 100 48.0
BraA06t26471Z Brassica rapa HOM05D003381 ORTHO05D003880 6.9e-07 58.2 100 48.0
MBI04_g21753_MAGBIO Magnolia biondii HOM05D003381 ORTHO05D003880 6.9e-07 58.2 76 56.6
BcaC07g39421 Brassica carinata HOM05D003381 ORTHO05D003880 9.0e-07 57.8 88 48.9
C02p60110 Brassica napus HOM05D003381 ORTHO05D003880 9.0e-07 57.8 90 48.9
BcaC03g17951 Brassica carinata HOM05D003381 ORTHO05D003880 1.2e-06 57.4 90 48.9
C08p24550 Brassica napus HOM05D003381 ORTHO05D003880 1.2e-06 57.4 85 49.4
BolC2t12066H Brassica oleracea HOM05D003381 ORTHO05D003880 1.2e-06 57.4 90 48.9
BolC8t50074H Brassica oleracea HOM05D003381 ORTHO05D003880 1.2e-06 57.4 85 49.4
BraA02t08981Z Brassica rapa HOM05D003381 ORTHO05D003880 1.2e-06 57.4 90 48.9
CARHR158590 Cardamine hirsuta HOM05D003381 ORTHO05D003880 1.2e-06 57.4 97 48.5
SEGI_09109 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 1.5e-06 57.0 111 45.0
BcaB01g00694 Brassica carinata HOM05D003381 ORTHO05D003880 2.0e-06 56.6 79 50.6
Peaxi162Scf01650g00008 Petunia axillaris HOM05D003381 ORTHO05D003880 2.6e-06 56.2 113 40.7
Sp5g12540 Schrenkiella parvula HOM05D003381 ORTHO05D003880 3.4e-06 55.8 89 49.4
AT5G24655 Arabidopsis thaliana HOM05D003381 ORTHO05D003880 5.9e-06 55.1 81 51.9
BolC8t50073H Brassica oleracea HOM05D003381 ORTHO05D003880 5.9e-06 55.1 87 51.7
A06p18190 Brassica napus HOM05D003381 ORTHO05D003880 7.7e-06 54.7 79 51.9
BraA06t24903Z Brassica rapa HOM05D003381 ORTHO05D003880 7.7e-06 54.7 79 51.9
SEGI_32370 Sequoiadendron giganteum HOM05D003381 ORTHO05D003880 7.7e-06 54.7 106 44.3


User provided reference genes

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