Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G320800 Prunus persica HOM05D008930 ORTHO05D011101 1.8e-53 212.2 103 100.0
QL09p006519 Quercus lobata HOM05D008930 ORTHO05D011101 6.2e-33 144.1 101 68.3
FAN03G0228 Fragaria x ananassa HOM05D008930 ORTHO05D011101 8.9e-32 140.2 103 66.0
CiPaw.05G207300 Carya illinoinensis HOM05D008930 ORTHO05D011101 1.2e-31 139.8 102 65.7
FvH4_7g33090 Fragaria vesca HOM05D008930 ORTHO05D011101 1.2e-31 139.8 103 66.0
Haze_00319 Corylus avellana HOM05D008930 ORTHO05D011101 3.4e-31 138.3 100 65.0
FAN10G1542 Fragaria x ananassa HOM05D008930 ORTHO05D011101 4.9e-30 134.4 103 64.1
FAN10G0670 Fragaria x ananassa HOM05D008930 ORTHO05D011101 5.4e-29 131.0 103 63.1
Hma1.2p1_0415F.1_g148300 Hydrangea macrophylla HOM05D008930 ORTHO05D011101 9.2e-29 130.2 100 62.0
Hma1.2p1_1867F.1_g305920 Hydrangea macrophylla HOM05D008930 ORTHO05D011101 9.2e-29 130.2 100 62.0
Hma1.2p1_0115F.1_g055620 Hydrangea macrophylla HOM05D008930 ORTHO05D011101 1.0e-27 126.7 95 61.1
TAR374G0067 Trochodendron aralioides HOM05D008930 ORTHO05D011101 6.6e-27 124.0 102 59.8
Rhsim03G0217200 Rhododendron simsii HOM05D008930 ORTHO05D011101 2.5e-26 122.1 99 56.6
Thecc.03G210900 Theobroma cacao HOM05D008930 ORTHO05D011101 3.3e-26 121.7 100 61.0
CAN.G65.147 Capsicum annuum HOM05D008930 ORTHO05D011101 8.1e-25 117.1 91 58.2
Sopen06g029390 Solanum pennellii HOM05D008930 ORTHO05D011101 3.1e-24 115.2 85 60.0
Lsat_1_v5_gn_8_3980 Lactuca sativa HOM05D008930 ORTHO05D011101 6.8e-24 114.0 94 58.5
MBI04_g27767_MAGBIO Magnolia biondii HOM05D008930 ORTHO05D011101 8.9e-24 113.6 100 56.0
PGSC0003DMG400027103 Solanum tuberosum HOM05D008930 ORTHO05D011101 8.9e-24 113.6 88 59.1
Actinidia34280 Actinidia chinensis HOM05D008930 ORTHO05D011101 1.5e-23 112.8 99 54.5
Potri.015G004300 Populus trichocarpa HOM05D008930 ORTHO05D011101 4.4e-23 111.3 100 57.0
DCAR_010565 Daucus carota HOM05D008930 ORTHO05D011101 1.7e-22 109.4 99 52.5
MBI04_g38995_MAGBIO Magnolia biondii HOM05D008930 ORTHO05D011101 2.9e-22 108.6 105 52.4
Aqoxy5G04368 Aquilegia oxysepala HOM05D008930 ORTHO05D011101 3.8e-22 108.2 81 56.8
Nn3g18757 Nelumbo nucifera HOM05D008930 ORTHO05D011101 3.8e-22 108.2 100 56.0
Sabra15G0002900 Salix brachista HOM05D008930 ORTHO05D011101 4.9e-22 107.8 100 53.0
vmacro06460 Vaccinium macrocarpon HOM05D008930 ORTHO05D011101 6.4e-22 107.5 96 54.2
Oeu031968.1 Olea europaea HOM05D008930 ORTHO05D011101 1.4e-21 106.3 101 52.5
AUR62005961 Chenopodium quinoa HOM05D008930 ORTHO05D011101 3.2e-21 105.1 81 56.8
AUR62028105 Chenopodium quinoa HOM05D008930 ORTHO05D011101 3.2e-21 105.1 105 51.4
ATR0332G067 Amborella trichopoda HOM05D008930 ORTHO05D011101 3.9e-19 98.2 84 53.6
MSTRG.8597 Avicennia marina HOM05D008930 ORTHO05D011101 1.9e-18 95.9 93 53.8
Peaxi162Scf00815g10012 Petunia axillaris HOM05D008930 ORTHO05D011101 5.6e-18 94.4 79 54.4
MBI12_g45761_MAGBIO Magnolia biondii HOM05D008930 ORTHO05D011101 7.3e-18 94.0 80 53.8
Solyc06g073040.1 Solanum lycopersicum HOM05D008930 ORTHO05D011101 9.6e-18 93.6 71 57.7
CANSAT21G0615 Cannabis sativa HOM05D008930 ORTHO05D011101 1.6e-17 92.8 93 47.3
Nitab4.5_0000115g0120 Nicotiana tabacum HOM05D008930 ORTHO05D011101 2.8e-17 92.0 73 58.9
Nitab4.5_0003561g0020 Nicotiana tabacum HOM05D008930 ORTHO05D011101 2.4e-16 89.0 73 56.2
SMO347G0570 Selaginella moellendorffii HOM05D001000 ORTHO05D011101 4.6e-12 74.7 97 42.3
AagrBONN_evm.TU.Sc2ySwM_228.3088 Anthoceros agrestis HOM05D000401 ORTHO05D000252 1.9e-10 69.3 95 37.9
SMO340G0153 Selaginella moellendorffii HOM05D000401 ORTHO05D000252 5.6e-10 67.8 52 50.0
Nitab4.5_0001135g0140 Nicotiana tabacum HOM05D000401 ORTHO05D000252 3.6e-09 65.1 69 39.1
Nitab4.5_0003068g0070 Nicotiana tabacum HOM05D000401 ORTHO05D000252 1.1e-08 63.5 71 40.8
PGSC0003DMG400019628 Solanum tuberosum HOM05D000401 ORTHO05D000252 6.9e-08 60.8 64 39.1
Phvul.005G171200 Phaseolus vulgaris HOM05D005698 ORTHO05D007022 9.0e-08 60.5 76 40.8
Solyc11g068780.1 Solanum lycopersicum HOM05D000401 ORTHO05D000252 9.0e-08 60.5 64 39.1
Sopen11g027500 Solanum pennellii HOM05D000401 ORTHO05D000252 9.0e-08 60.5 64 39.1
DCAR_030639 Daucus carota HOM05D001000 ORTHO05D002976 2.0e-07 59.3 87 34.5
SalBow3G1327 Salvia bowleyana HOM05D000401 ORTHO05D000252 2.6e-07 58.9 79 38.0
CAN.G745.30 Capsicum annuum HOM05D000401 ORTHO05D000252 3.4e-07 58.5 78 33.3
TAR383G0966 Trochodendron aralioides HOM05D000401 ORTHO05D000252 3.4e-07 58.5 99 32.3
Thhalv10009577m.g Eutrema salsugineum HOM05D000401 ORTHO05D000252 5.8e-07 57.8 60 40.0
Nn1g03382 Nelumbo nucifera HOM05D000401 ORTHO05D000252 5.8e-07 57.8 96 33.3
SEGI_21423 Sequoiadendron giganteum HOM05D000401 ORTHO05D000252 5.8e-07 57.8 57 43.9
Aqoxy5G00464 Aquilegia oxysepala HOM05D001000 ORTHO05D002976 7.6e-07 57.4 63 39.7
Cc01_g19340 Coffea canephora HOM05D001000 ORTHO05D002976 7.6e-07 57.4 78 34.6
SGA_v2.0_scaffold1G00493 Striga asiatica HOM05D001000 ORTHO05D002976 7.6e-07 57.4 75 38.7
Lj1P260T36 Lonicera japonica HOM05D000401 ORTHO05D000252 9.9e-07 57.0 62 38.7
Mapoly0142s0001 Marchantia polymorpha HOM05D000401 ORTHO05D000252 9.9e-07 57.0 97 33.0
ATR0733G013 Amborella trichopoda HOM05D000401 ORTHO05D000252 1.3e-06 56.6 68 38.2
arahy.Tifrunner.gnm1.ann1.1M8NR5 Arachis hypogaea HOM05D001000 ORTHO05D002976 1.3e-06 56.6 82 36.6
Cc01_g08630 Coffea canephora HOM05D000401 ORTHO05D000252 1.3e-06 56.6 63 39.7
Lj1g0008429 Lotus japonicus HOM05D000401 ORTHO05D000252 1.3e-06 56.6 89 33.7
Nitab4.5_0006903g0040 Nicotiana tabacum HOM05D000401 ORTHO05D000252 1.3e-06 56.6 70 38.6
SEGI_33718 Sequoiadendron giganteum HOM05D001000 ORTHO05D001896 1.3e-06 56.6 65 40.0
AT1G06920 Arabidopsis thaliana HOM05D000401 ORTHO05D000252 1.7e-06 56.2 86 33.7
Carub.0001s0621 Capsella rubella HOM05D000401 ORTHO05D000252 1.7e-06 56.2 60 38.3
Cc01_g15220 Coffea canephora HOM05D000401 ORTHO05D000252 1.7e-06 56.2 66 40.9
Migut.D00315 Erythranthe guttata HOM05D001000 ORTHO05D002976 1.7e-06 56.2 78 35.9
THA.LOC104799558 Tarenaya hassleriana HOM05D000401 ORTHO05D000252 1.7e-06 56.2 69 34.8
AagrBONN_evm.TU.Sc2ySwM_228.2870 Anthoceros agrestis HOM05D000401 ORTHO05D000252 2.2e-06 55.8 97 33.0
BcaC01g05994 Brassica carinata HOM05D000401 ORTHO05D000252 2.2e-06 55.8 57 42.1
BcaC07g42549 Brassica carinata HOM05D000401 ORTHO05D000252 2.2e-06 55.8 83 37.3
C03p20040 Brassica napus HOM05D000401 ORTHO05D000252 2.2e-06 55.8 57 42.1
Oeu058243.1 Olea europaea HOM05D000401 ORTHO05D000252 2.2e-06 55.8 67 37.3
PSO210G3543 Papaver somniferum HOM05D001000 ORTHO05D002976 2.2e-06 55.8 86 33.7
PSO832G4130 Papaver somniferum HOM05D001000 ORTHO05D002976 2.2e-06 55.8 86 33.7
SMO169G0089 Selaginella moellendorffii HOM05D000401 ORTHO05D000252 2.2e-06 55.8 98 34.7
SMO230G0037 Selaginella moellendorffii HOM05D000401 ORTHO05D000252 2.2e-06 55.8 65 33.8
CSS0013646 Camellia sinensis var. sinensis HOM05D001000 ORTHO05D002976 2.9e-06 55.5 83 33.7
Glyma.02G146400 Glycine max HOM05D001000 ORTHO05D002976 2.9e-06 55.5 69 37.7
Glyma.10G027500 Glycine max HOM05D001000 ORTHO05D002976 2.9e-06 55.5 69 37.7
Nitab4.5_0002904g0110 Nicotiana tabacum HOM05D000401 ORTHO05D000252 2.9e-06 55.5 66 37.9
Phvul.007G173000 Phaseolus vulgaris HOM05D001000 ORTHO05D002976 2.9e-06 55.5 69 37.7
Pp3c21_12190 Physcomitrium patens HOM05D000401 ORTHO05D000252 2.9e-06 55.5 74 39.2
VMungo0720G2136 Vigna mungo HOM05D001000 ORTHO05D002976 2.9e-06 55.5 69 37.7
arahy.Tifrunner.gnm1.ann1.HFU6F2 Arachis hypogaea HOM05D001000 ORTHO05D002976 3.8e-06 55.1 69 37.7
arahy.Tifrunner.gnm1.ann1.N32B4U Arachis hypogaea HOM05D001000 ORTHO05D002976 3.8e-06 55.1 69 37.7
BcaC07g42038 Brassica carinata HOM05D000401 ORTHO05D000252 3.8e-06 55.1 86 33.7
C08p50910 Brassica napus HOM05D000401 ORTHO05D000252 3.8e-06 55.1 86 33.7
BolC8t52619H Brassica oleracea HOM05D000401 ORTHO05D000252 3.8e-06 55.1 86 33.7
CSS0047001 Camellia sinensis var. sinensis HOM05D001000 ORTHO05D002976 3.8e-06 55.1 68 38.2
Cfa015654 Carpinus fangiana HOM05D001000 ORTHO05D002976 3.8e-06 55.1 74 36.5
Haze_00891 Corylus avellana HOM05D001000 ORTHO05D002976 3.8e-06 55.1 74 36.5
Gohir.D09G214200 Gossypium hirsutum HOM05D000401 ORTHO05D000252 3.8e-06 55.1 80 35.0
Gorai.006G234600 Gossypium raimondii HOM05D000401 ORTHO05D000252 3.8e-06 55.1 80 35.0
MBI11_g31277_MAGBIO Magnolia biondii HOM05D001000 ORTHO05D002976 3.8e-06 55.1 74 37.8
SalBow6G3591 Salvia bowleyana HOM05D000401 ORTHO05D000252 3.8e-06 55.1 68 36.8
SGA_v2.0_scaffold7G03984 Striga asiatica HOM05D000401 ORTHO05D000252 3.8e-06 55.1 68 36.8
Atru.chr3.3144 Acer truncatum HOM05D000401 ORTHO05D000252 4.9e-06 54.7 90 28.9
Aa31LG6G1550 Aethionema arabicum HOM05D000401 ORTHO05D000252 4.9e-06 54.7 75 36.0
BcaC06g30597 Brassica carinata HOM05D000401 ORTHO05D000252 4.9e-06 54.7 89 34.8
CAN.G3.10 Capsicum annuum HOM05D001000 ORTHO05D002976 4.9e-06 54.7 68 38.2
COL.COLO4_21485 Corchorus olitorius HOM05D001000 ORTHO05D002976 4.9e-06 54.7 80 35.0
Gohir.A09G213646 Gossypium hirsutum HOM05D000401 ORTHO05D000252 4.9e-06 54.7 80 35.0
Lalb_Chr24g0393421 Lupinus albus HOM05D000401 ORTHO05D000252 4.9e-06 54.7 67 35.8
Medtr5g075210 Medicago truncatula HOM05D000401 ORTHO05D000252 4.9e-06 54.7 60 38.3
Nitab4.5_0004318g0090 Nicotiana tabacum HOM05D001000 ORTHO05D002976 4.9e-06 54.7 86 34.9
Nitab4.5_0005947g0050 Nicotiana tabacum HOM05D000401 ORTHO05D000252 4.9e-06 54.7 62 38.7
Peaxi162Scf00112g00092 Petunia axillaris HOM05D000401 ORTHO05D000252 4.9e-06 54.7 91 34.1
Peaxi162Scf00390g00337 Petunia axillaris HOM05D000401 ORTHO05D000252 4.9e-06 54.7 80 35.0
PGR004G0529 Punica granatum HOM05D001000 ORTHO05D002976 4.9e-06 54.7 67 38.8
SHI12920 Sapria himalayana HOM05D000401 ORTHO05D000252 4.9e-06 54.7 84 34.5
SGA_v2.0_scaffold39G15227 Striga asiatica HOM05D001000 ORTHO05D002976 4.9e-06 54.7 62 40.3
C02p10730 Brassica napus HOM05D000401 ORTHO05D000252 6.4e-06 54.3 68 32.4
BraA09t42008Z Brassica rapa HOM05D000401 ORTHO05D000252 6.4e-06 54.3 86 32.6
Cfa011818 Carpinus fangiana HOM05D000401 ORTHO05D000252 6.4e-06 54.3 60 40.0
CiPaw.01G166800 Carya illinoinensis HOM05D001000 ORTHO05D002976 6.4e-06 54.3 79 34.2
Ciclev10030088m.g Citrus clementina HOM05D000401 ORTHO05D000252 6.4e-06 54.3 63 38.1
COL.COLO4_22650 Corchorus olitorius HOM05D000401 ORTHO05D000252 6.4e-06 54.3 66 34.8
Os02g0679700 Oryza sativa ssp. japonica HOM05D000401 ORTHO05D000252 6.4e-06 54.3 69 34.8
Potri.009G161700 Populus trichocarpa HOM05D000401 ORTHO05D000252 6.4e-06 54.3 60 36.7
Rhsim13G0060700 Rhododendron simsii HOM05D000401 ORTHO05D000252 6.4e-06 54.3 60 41.7
SGA_v2.0_scaffold13G06669 Striga asiatica HOM05D001000 ORTHO05D001896 6.4e-06 54.3 62 35.5
HPP92_011912 Vanilla planifolia HOM05D000401 ORTHO05D000252 6.4e-06 54.3 62 38.7
ATR0315G001 Amborella trichopoda HOM05D000401 ORTHO05D000252 8.4e-06 53.9 61 36.1
MSTRG.4034 Avicennia marina HOM05D001000 ORTHO05D002976 8.4e-06 53.9 74 35.1
BcaC03g13867 Brassica carinata HOM05D000401 ORTHO05D000252 8.4e-06 53.9 68 32.4
A09p66680 Brassica napus HOM05D000401 ORTHO05D000252 8.4e-06 53.9 60 38.3
DCAR_002384 Daucus carota HOM05D001000 ORTHO05D002976 8.4e-06 53.9 64 37.5
Duzib150G0467 Durio zibethinus HOM05D000401 ORTHO05D000252 8.4e-06 53.9 92 32.6
Lj5g0016912 Lotus japonicus HOM05D001000 ORTHO05D002976 8.4e-06 53.9 70 41.4
Oeu037890.1 Olea europaea HOM05D000401 ORTHO05D000252 8.4e-06 53.9 103 33.0
Peaxi162Scf00345g01013 Petunia axillaris HOM05D000401 ORTHO05D000252 8.4e-06 53.9 64 37.5
SEGI_23260 Sequoiadendron giganteum HOM05D000401 ORTHO05D000252 8.4e-06 53.9 68 36.8
Solyc05g055220.1 Solanum lycopersicum HOM05D001000 ORTHO05D001896 8.4e-06 53.9 63 38.1
Sopen05g033660 Solanum pennellii HOM05D001000 ORTHO05D001896 8.4e-06 53.9 63 38.1
PGSC0003DMG400014511 Solanum tuberosum HOM05D000401 ORTHO05D000252 8.4e-06 53.9 91 29.7
HPP92_023653 Vanilla planifolia HOM05D000401 ORTHO05D000252 8.4e-06 53.9 65 38.5


User provided reference genes

Program Settings