Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 0.0e+00 1611.3 860 100.0
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 0.0e+00 1336.2 859 83.6
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 0.0e+00 1328.9 860 84.3
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 0.0e+00 1183.3 861 76.1
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1105.9 865 71.0
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1092.4 867 70.4
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 0.0e+00 1087.0 867 70.4
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 0.0e+00 1086.6 876 70.5
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 0.0e+00 1075.1 876 70.1
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 4.9e-309 1064.3 906 66.6
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 3.2e-308 1061.6 867 69.2
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 7.6e-302 1040.4 887 68.0
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 3.5e-299 1031.6 866 67.6
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 7.9e-299 1030.4 789 71.7
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 8.7e-290 1000.3 804 69.4
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 4.8e-288 994.6 870 66.1
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 6.9e-287 990.7 864 65.9
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 3.4e-286 988.4 867 64.7
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 1.8e-282 976.1 910 62.2
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 2.3e-282 975.7 872 64.8
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 2.2e-280 969.1 879 62.9
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 6.3e-280 967.6 877 63.2
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 8.2e-280 967.2 864 64.2
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 2.4e-279 965.7 876 63.0
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 4.5e-278 961.4 879 63.4
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 4.5e-278 961.4 876 62.7
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.4e-274 949.9 872 63.5
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 7.4e-273 944.1 879 63.5
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.1e-271 938.3 874 62.6
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 1.2e-270 936.8 879 63.4
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 1.5e-270 936.4 883 63.0
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 5.0e-269 931.4 841 64.2
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.4e-268 929.9 873 61.2
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 4.7e-267 924.9 862 62.6
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 1.4e-266 923.3 871 62.1
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 3.0e-266 922.2 877 62.3
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 3.3e-265 918.7 845 63.6
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 9.7e-265 917.1 845 62.8
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 9.7e-265 917.1 872 62.4
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 8.2e-264 914.1 869 61.2
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 8.2e-264 914.1 871 60.4
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 1.7e-261 906.4 762 67.2
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 1.7e-261 906.4 877 60.9
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 2.9e-261 905.6 868 61.3
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 8.5e-261 904.0 863 62.1
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.1e-260 903.7 793 64.7
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 3.6e-259 898.7 880 60.1
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 2.3e-258 896.0 876 61.4
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 4.4e-257 891.7 831 61.9
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.8e-256 889.0 866 60.7
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 1.0e-253 880.6 948 56.9
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.9e-253 879.0 766 65.9
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 3.6e-251 872.1 872 60.7
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 3.6e-251 872.1 877 59.3
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 9.8e-249 864.0 879 60.4
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 9.8e-249 864.0 852 60.7
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 3.5e-246 855.5 881 58.9
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 5.0e-245 851.7 883 58.7
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 5.5e-244 848.2 875 58.3
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 1.6e-243 846.7 837 59.4
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.6e-243 845.5 881 58.8
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 7.5e-241 837.8 754 63.8
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 9.2e-239 830.9 882 58.0
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 8.6e-237 824.3 902 55.7
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 1.2e-235 820.5 866 57.3
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 3.0e-234 815.8 865 57.7
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.3e-232 810.4 877 57.0
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 1.4e-231 807.0 868 55.3
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 3.9e-229 798.9 871 54.9
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 3.3e-228 795.8 838 56.0
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 5.6e-228 795.0 889 54.0
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 6.2e-227 791.6 879 56.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.0e-226 788.9 880 56.5
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.9e-224 781.9 879 56.0
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 1.6e-222 776.9 874 55.8
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 2.0e-222 776.5 862 54.3
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.7e-222 776.2 863 54.2
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 1.2e-217 760.8 846 53.9
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 1.4e-215 753.8 870 54.8
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 1.9e-215 753.4 869 54.1
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 3.5e-214 749.2 889 53.8
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 3.5e-214 749.2 914 52.6
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 7.3e-212 741.5 870 54.4
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 9.5e-212 741.1 883 54.5
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 1.2e-209 734.2 861 53.0
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 1.3e-208 730.7 781 56.3
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 2.2e-208 729.9 661 64.3
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.2e-206 724.2 875 53.0
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 5.1e-205 718.8 863 52.7
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.5e-204 717.2 852 52.5
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 2.5e-204 716.5 860 53.8
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.5e-201 707.2 823 54.2
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.8e-201 705.3 874 52.4
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 1.2e-198 697.6 815 53.4
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 1.6e-198 697.2 873 52.0
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 1.7e-197 693.7 683 60.9
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 3.6e-195 686.0 809 53.3
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 2.4e-194 683.3 869 50.7
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 2.2e-192 676.8 868 52.5
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 2.4e-191 673.3 812 52.3
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 1.2e-185 654.4 722 54.4
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 4.6e-182 642.5 864 49.2
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 1.5e-180 637.5 804 50.6
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 2.5e-180 636.7 862 49.4
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 2.1e-179 633.6 650 57.4
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 6.2e-179 632.1 895 46.7
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 1.4e-178 630.9 747 52.3
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 4.2e-175 619.4 504 70.2
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 3.9e-173 612.8 716 54.3
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 6.5e-168 595.5 855 47.5
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 6.1e-166 589.0 789 50.2
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.3e-165 587.8 861 46.8
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 3.0e-165 586.6 789 49.7
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 2.0e-156 557.4 749 48.7
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 2.6e-156 557.0 747 49.7
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.7e-152 544.3 875 44.9
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 5.0e-152 542.7 753 49.5
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 1.4e-151 541.2 739 49.3
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 1.6e-150 537.7 871 44.0
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 1.4e-149 534.6 837 45.0
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 1.5e-148 531.2 748 48.4
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 1.4e-146 524.6 863 43.7
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 7.7e-145 518.8 868 43.3
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.7e-144 517.7 714 49.0
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 5.2e-141 506.1 751 46.6
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.7e-139 500.0 834 42.1
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 6.1e-126 456.1 738 44.6
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 6.3e-123 446.0 730 44.4
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 4.1e-122 443.4 746 44.1
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 1.2e-121 441.8 368 68.5
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 2.7e-121 440.7 730 43.7
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 7.8e-121 439.1 730 44.0
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 8.9e-117 425.6 730 42.9
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 1.5e-116 424.9 730 43.2
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 6.0e-113 412.9 319 72.1
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 6.0e-113 412.9 319 72.1
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 6.2e-110 402.9 304 75.0
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 5.8e-108 396.4 746 41.4
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.4e-106 391.0 421 54.2
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 9.3e-82 309.3 1011 31.2
arahy.Tifrunner.gnm1.ann1.3V8RAA Arachis hypogaea HOM05D003640 ORTHO05D004439 1.5e-76 292.0 428 45.8
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 2.0e-76 291.6 662 36.6
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 3.2e-74 284.3 733 34.9
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 1.3e-72 278.9 734 34.5
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 2.3e-72 278.1 929 32.0
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 2.4e-66 258.1 726 32.6
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.2e-58 230.7 829 28.6
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 4.1e-53 214.2 356 40.7
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 9.0e-53 213.0 144 79.9
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 3.7e-46 191.0 163 62.0
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.8e-37 162.2 148 63.5
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.8e-37 162.2 129 69.8
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 5.3e-37 160.6 251 43.8
HanXRQChr03g0061701 Helianthus annuus HOM05D003640 ORTHO05D004439 1.5e-36 159.1 173 52.6
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 1.8e-32 145.6 119 66.4
Potri.016G069900 Populus trichocarpa HOM05D003640 ORTHO05D034990 4.1e-29 134.4 77 90.9
HanXRQChr06g0170111 Helianthus annuus HOM05D003640 ORTHO05D004439 1.7e-27 129.0 125 56.0
HanXRQChr15g0479781 Helianthus annuus HOM05D003640 ORTHO05D004439 5.0e-27 127.5 127 55.1
Dinv35373 Davidia involucrata HOM05D003640 ORTHO05D004439 4.7e-25 120.9 89 70.8
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 3.3e-23 114.8 162 45.7
PSO017G5262 Papaver somniferum HOM05D003640 ORTHO05D004439 5.7e-23 114.0 188 42.0
PSO170G6851 Papaver somniferum HOM05D003640 ORTHO05D004439 2.4e-21 108.6 163 45.4
COL.COLO4_06022 Corchorus olitorius HOM05D003057 ORTHO05D003904 4.1e-21 107.8 131 55.0
CAN.G1387.1 Capsicum annuum HOM05D003640 ORTHO05D004439 1.7e-19 102.4 213 37.6
C02p18030 Brassica napus HOM05D003640 ORTHO05D004439 2.5e-18 98.6 401 29.2
BolC2t07935H Brassica oleracea HOM05D003640 ORTHO05D004439 4.2e-18 97.8 334 31.7
AL8G28750 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 2.0e-15 89.0 202 37.1
PGR042G3558 Punica granatum HOM05D000045 ORTHO05D000611 6.3e-14 84.0 155 41.3
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 1.4e-13 82.8 87 57.5
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 5.4e-13 80.9 87 56.3
COL.COLO4_24960 Corchorus olitorius HOM05D003640 ORTHO05D004439 7.0e-13 80.5 100 55.0
CAN.G598.13 Capsicum annuum HOM05D003640 ORTHO05D004439 1.6e-12 79.3 198 34.8
CAN.G732.35 Capsicum annuum HOM05D003640 ORTHO05D004439 3.5e-12 78.2 188 37.2
arahy.Tifrunner.gnm1.ann1.JKFZ9B Arachis hypogaea HOM05D003640 ORTHO05D082470 1.7e-11 75.9 60 66.7
CAN.G358.52 Capsicum annuum HOM05D003640 ORTHO05D004439 6.6e-11 73.9 95 46.3
MELO3C010660.2 Cucumis melo HOM05D003640 ORTHO05D004439 1.6e-09 69.3 45 73.3
RcHm_v2.0_Chr1g0382591 Rosa chinensis HOM05D003640 ORTHO05D345170 1.0e-08 66.6 67 53.7
BolC9t57241H Brassica oleracea HOM05D003640 ORTHO05D004439 3.0e-08 65.1 251 29.1
ECA232G0388 Erigeron canadensis HOM05D003640 ORTHO05D004439 9.8e-07 60.1 77 37.7
ECA233G3458 Erigeron canadensis HOM05D000153 ORTHO05D002648 9.8e-07 60.1 76 38.2


User provided reference genes

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