Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G311400 Prunus persica HOM05D006590 ORTHO05D008427 0.0e+00 1342.0 670 100.0
FAN10G1373 Fragaria x ananassa HOM05D006590 ORTHO05D008427 0.0e+00 1158.7 674 85.8
FAN10G2802 Fragaria x ananassa HOM05D006590 ORTHO05D008427 0.0e+00 1157.5 674 85.6
MD01G1219800 Malus domestica HOM05D006590 ORTHO05D008427 0.0e+00 1156.0 636 89.2
FvH4_7g31750 Fragaria vesca HOM05D006590 ORTHO05D008427 0.0e+00 1155.6 674 85.8
FAN06G3161 Fragaria x ananassa HOM05D006590 ORTHO05D008427 0.0e+00 1151.3 674 85.6
FAN03G2401 Fragaria x ananassa HOM05D006590 ORTHO05D008427 0.0e+00 1150.2 672 85.3
FAN06G3878 Fragaria x ananassa HOM05D006590 ORTHO05D008427 0.0e+00 1148.3 674 85.5
RcHm_v2.0_Chr1g0380971 Rosa chinensis HOM05D006590 ORTHO05D008427 0.0e+00 1146.7 678 85.7
FAN01G1498 Fragaria x ananassa HOM05D006590 ORTHO05D008427 0.0e+00 1129.8 685 83.5
QL09p009505 Quercus lobata HOM05D006590 ORTHO05D008427 1.2e-305 1052.7 672 78.4
Haze_00189 Corylus avellana HOM05D006590 ORTHO05D008427 1.2e-302 1042.7 674 77.0
Cfa016251 Carpinus fangiana HOM05D006590 ORTHO05D008427 5.5e-300 1033.9 677 76.8
CiPaw.05G251800 Carya illinoinensis HOM05D006590 ORTHO05D008427 1.6e-299 1032.3 677 76.4
Actinidia08640 Actinidia chinensis HOM05D006590 ORTHO05D008427 1.7e-293 1012.3 677 74.4
CSS0003993 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 8.6e-293 1010.0 678 74.6
Atru.chr1.163 Acer truncatum HOM05D006590 ORTHO05D008427 7.3e-292 1006.9 676 75.3
CANSAT21G0035 Cannabis sativa HOM05D006590 ORTHO05D008427 2.3e-290 1001.9 682 73.2
Ciclev10004491m.g Citrus clementina HOM05D006590 ORTHO05D008427 2.0e-289 998.8 672 72.8
Thecc.03G196200 Theobroma cacao HOM05D006590 ORTHO05D008427 4.9e-288 994.2 678 74.3
Manes.06G159700 Manihot esculenta HOM05D006590 ORTHO05D008427 7.8e-286 986.9 673 73.4
Duzib205G0486 Durio zibethinus HOM05D006590 ORTHO05D008427 2.3e-285 985.3 679 73.0
COL.COLO4_11262 Corchorus olitorius HOM05D006590 ORTHO05D008427 1.8e-282 975.7 701 71.3
TWI14G0328 Tripterygium wilfordii HOM05D006590 ORTHO05D008427 5.8e-281 970.7 672 73.4
GSVIVG01038710001 Vitis vinifera HOM05D006590 ORTHO05D008427 9.8e-281 969.9 671 73.8
Rhsim03G0207800 Rhododendron simsii HOM05D006590 ORTHO05D008427 1.3e-280 969.5 673 72.8
Ca_16698_v3 Cicer arietinum L. HOM05D006590 ORTHO05D008427 2.9e-280 968.4 676 72.0
vmacro06540 Vaccinium macrocarpon HOM05D006590 ORTHO05D008427 4.6e-278 961.1 673 71.8
arahy.Tifrunner.gnm1.ann1.X012TI Arachis hypogaea HOM05D006590 ORTHO05D008427 1.0e-277 959.9 677 71.8
arahy.Tifrunner.gnm1.ann1.ICGL65 Arachis hypogaea HOM05D006590 ORTHO05D008427 4.7e-275 951.0 693 70.6
Lj1g0007393 Lotus japonicus HOM05D006590 ORTHO05D008427 1.8e-274 949.1 677 70.0
Medtr3g091290 Medicago truncatula HOM05D006590 ORTHO05D008427 4.0e-274 948.0 674 70.3
Glyma.06G127700 Glycine max HOM05D006590 ORTHO05D008427 3.4e-273 944.9 676 70.1
Dinv35324 Davidia involucrata HOM05D006590 ORTHO05D008427 7.5e-273 943.7 577 81.3
Eucgr.A01466 Eucalyptus grandis HOM05D006590 ORTHO05D008427 7.5e-273 943.7 677 70.3
Glyma.04G236600 Glycine max HOM05D006590 ORTHO05D008427 9.9e-273 943.3 676 70.0
Potri.015G017100 Populus trichocarpa HOM05D006590 ORTHO05D008427 1.3e-272 943.0 587 80.6
TPR.G17286 Trifolium pratense HOM05D006590 ORTHO05D008427 1.7e-272 942.6 679 70.1
PGR042G1173 Punica granatum HOM05D006590 ORTHO05D008427 5.4e-271 937.6 684 69.6
Psat5g078080 Pisum sativum HOM05D006590 ORTHO05D008427 4.6e-270 934.5 679 70.1
Lalb_Chr08g0240321 Lupinus albus HOM05D006590 ORTHO05D008427 2.3e-269 932.2 677 69.9
Phvul.009G053500 Phaseolus vulgaris HOM05D006590 ORTHO05D008427 6.6e-269 930.6 674 69.1
THA.LOC104800297 Tarenaya hassleriana HOM05D006590 ORTHO05D008427 9.6e-268 926.8 675 70.1
Gohir.D12G251400 Gossypium hirsutum HOM05D006590 ORTHO05D008427 2.4e-266 922.2 677 69.0
Gohir.A12G250600 Gossypium hirsutum HOM05D006590 ORTHO05D008427 8.9e-266 920.2 677 69.1
Hma1.2p1_0404F.1_g145500 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 2.6e-265 918.7 589 77.4
Gorai.008G269500 Gossypium raimondii HOM05D006590 ORTHO05D008427 2.9e-264 915.2 677 68.5
VMungo1309G0677 Vigna mungo HOM05D006590 ORTHO05D008427 8.4e-264 913.7 680 67.5
MELO3C008489.2 Cucumis melo HOM05D006590 ORTHO05D008427 4.2e-263 911.4 670 68.7
CsaV3_3G027870 Cucumis sativus L. HOM05D006590 ORTHO05D008427 7.8e-262 907.1 670 67.6
Aqoxy5G04233 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 1.3e-261 906.4 667 66.7
Sed0010238 Sechium edule HOM05D006590 ORTHO05D008427 2.3e-261 905.6 702 66.4
Sc13g0009780 Simmondsia chinensis HOM05D006590 ORTHO05D008427 3.9e-261 904.8 678 67.8
Nn1g01869 Nelumbo nucifera HOM05D006590 ORTHO05D008427 1.1e-260 903.3 669 68.8
TAR375G1022 Trochodendron aralioides HOM05D006590 ORTHO05D008427 7.3e-260 900.6 676 69.1
PSO063G2913 Papaver somniferum HOM05D006590 ORTHO05D008427 1.4e-258 896.3 668 67.5
BraA10t43179Z Brassica rapa HOM05D006590 ORTHO05D008427 4.4e-257 891.3 673 68.6
PSO170G2823 Papaver somniferum HOM05D006590 ORTHO05D008427 4.4e-257 891.3 666 67.3
BolC9t57211H Brassica oleracea HOM05D006590 ORTHO05D008427 6.4e-256 887.5 677 68.1
ECA232G3273 Erigeron canadensis HOM05D006590 ORTHO05D008427 1.1e-255 886.7 670 66.9
Oeu041046.1 Olea europaea HOM05D006590 ORTHO05D008427 7.1e-255 884.0 674 66.5
Sp6g15580 Schrenkiella parvula HOM05D006590 ORTHO05D008427 7.1e-255 884.0 678 68.0
Thhalv10012882m.g Eutrema salsugineum HOM05D006590 ORTHO05D008427 1.0e-253 880.2 675 67.1
Carub.0008s1361 Capsella rubella HOM05D006590 ORTHO05D008427 1.1e-252 876.7 675 67.4
Migut.F00225 Erythranthe guttata HOM05D006590 ORTHO05D008427 1.5e-252 876.3 667 65.2
HanXRQChr09g0250931 Helianthus annuus HOM05D006590 ORTHO05D008427 5.6e-252 874.4 651 67.3
AL8G28150 Arabidopsis lyrata HOM05D006590 ORTHO05D008427 1.8e-250 869.4 679 66.1
MBI07_g07100_MAGBIO Magnolia biondii HOM05D006590 ORTHO05D008427 3.1e-250 868.6 709 62.9
AUR62019378 Chenopodium quinoa HOM05D006590 ORTHO05D008427 5.3e-250 867.8 709 63.2
Sopen03g023190 Solanum pennellii HOM05D006590 ORTHO05D008427 9.0e-250 867.1 677 66.5
AUR62006110 Chenopodium quinoa HOM05D006590 ORTHO05D008427 5.8e-249 864.4 670 65.8
PGSC0003DMG400009120 Solanum tuberosum HOM05D006590 ORTHO05D008427 4.9e-248 861.3 674 65.6
CARHR266570 Cardamine hirsuta HOM05D006590 ORTHO05D008427 8.4e-248 860.5 676 66.9
DCAR_014541 Daucus carota HOM05D006590 ORTHO05D008427 1.9e-247 859.4 609 69.6
Aa31LG3G9610 Aethionema arabicum HOM05D006590 ORTHO05D008427 1.6e-246 856.3 670 66.7
A10p10910 Brassica napus HOM05D001108 ORTHO05D001619 7.9e-246 854.0 648 68.4
CAN.G108.67 Capsicum annuum HOM05D006590 ORTHO05D008427 1.3e-245 853.2 675 64.7
C09p43300 Brassica napus HOM05D001108 ORTHO05D001619 6.7e-245 850.9 652 67.9
SalBow4G1653 Salvia bowleyana HOM05D006590 ORTHO05D008427 7.6e-241 837.4 675 64.1
Cc02_g01670 Coffea canephora HOM05D006590 ORTHO05D008427 1.4e-239 833.2 582 70.1
Potri.015G016801 Populus trichocarpa HOM05D006590 ORTHO05D008427 1.9e-239 832.8 596 73.2
CSS0014515 Camellia sinensis var. sinensis HOM05D006590 ORTHO05D008427 3.2e-239 832.0 536 76.9
Peaxi162Scf00550g00546 Petunia axillaris HOM05D006590 ORTHO05D008427 1.2e-238 830.1 672 64.1
BcaB08g35710 Brassica carinata HOM05D006590 ORTHO05D008427 1.3e-235 820.1 674 64.5
Nitab4.5_0000714g0140 Nicotiana tabacum HOM05D006590 ORTHO05D008427 2.5e-231 805.8 671 63.6
EL10Ac3g05300 Beta vulgaris HOM05D006590 ORTHO05D008427 3.1e-226 788.9 669 61.7
Lsat_1_v5_gn_5_75160 Lactuca sativa HOM05D006590 ORTHO05D008427 2.0e-225 786.2 665 63.9
SGA_v2.0_scaffold44G16790 Striga asiatica HOM05D006590 ORTHO05D008427 1.0e-224 783.9 587 65.8
Os01g0655500 Oryza sativa ssp. japonica HOM05D006590 ORTHO05D008427 2.3e-221 772.7 626 60.9
HPP92_006416 Vanilla planifolia HOM05D006590 ORTHO05D008427 1.5e-220 770.0 593 64.8
Cpa.g.sc3.70 Carica papaya HOM05D006590 ORTHO05D008427 8.8e-213 744.2 675 59.4
Hma1.2p1_0404F.1_g145510 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 4.8e-211 738.4 463 78.4
Nitab4.5_0007081g0010 Nicotiana tabacum HOM05D006590 ORTHO05D008427 1.8e-210 736.5 671 59.8
ATR0602G100 Amborella trichopoda HOM05D006590 ORTHO05D008427 5.3e-210 734.9 592 63.0
Solyc03g083420.4 Solanum lycopersicum HOM05D006590 ORTHO05D008427 6.7e-205 718.0 532 68.2
SEGI_37244 Sequoiadendron giganteum HOM05D006590 ORTHO05D008427 3.3e-204 715.7 626 59.4
Lj1C1015G5 Lonicera japonica HOM05D006590 ORTHO05D008427 2.5e-183 646.4 675 53.6
unitig_899.g15485 Utricularia gibba HOM05D006590 ORTHO05D008427 2.6e-180 636.3 617 54.0
ClCG05G008870 Citrullus lanatus HOM05D006590 ORTHO05D008427 1.2e-174 617.5 434 71.4
AT5G53450 Arabidopsis thaliana HOM05D006590 ORTHO05D008427 6.2e-174 615.1 455 68.6
Mapoly0022s0163 Marchantia polymorpha HOM05D006590 ORTHO05D008427 1.1e-165 587.8 603 50.9
SMO172G0068 Selaginella moellendorffii HOM05D006590 ORTHO05D008427 2.2e-155 553.5 592 51.5
Zm00001eb158040 Zea mays HOM05D006590 ORTHO05D008427 1.2e-148 531.2 357 71.4
SalBow4G1387 Salvia bowleyana HOM05D006590 ORTHO05D008427 1.6e-137 494.2 361 65.7
Sabra15G0013100 Salix brachista HOM05D006590 ORTHO05D008427 5.0e-107 392.9 261 77.8
CBR_g39728 Chara braunii HOM05D006590 ORTHO05D008427 3.7e-94 350.1 882 30.4
Potri.015G016500 Populus trichocarpa HOM05D006590 ORTHO05D008427 6.3e-86 322.8 327 55.7
Actinidia33527 Actinidia chinensis HOM05D006590 ORTHO05D008427 2.2e-75 287.7 352 49.4
Potri.015G016600 Populus trichocarpa HOM05D006590 ORTHO05D008427 1.2e-60 238.8 159 76.7
Sabra15G0012800 Salix brachista HOM05D006590 ORTHO05D008427 1.8e-48 198.4 151 68.2
BcaC04g19592 Brassica carinata HOM05D006590 ORTHO05D008427 1.0e-43 182.6 122 74.6
Potri.015G016375 Populus trichocarpa HOM05D006590 ORTHO05D008427 1.1e-42 179.1 144 66.0
Potri.015G016300 Populus trichocarpa HOM05D006590 ORTHO05D008427 3.3e-42 177.6 139 66.9
Hund04856 Selenicereus undatus HOM05D006590 ORTHO05D008427 4.6e-36 157.1 185 51.4
Actinidia34212 Actinidia chinensis HOM05D006590 ORTHO05D008427 4.3e-26 124.0 75 74.7
COL.COLO4_02893 Corchorus olitorius HOM05D006590 ORTHO05D008427 4.0e-24 117.5 61 91.8
Hma1.2p1_0404F.1_g145520 Hydrangea macrophylla HOM05D006590 ORTHO05D008427 1.1e-18 99.4 62 75.8
CDE10G1176 Ceratophyllum demersum HOM05D006590 ORTHO05D008427 1.3e-17 95.9 58 72.4
Lsat_1_v5_gn_2_64600 Lactuca sativa HOM05D006590 ORTHO05D011991 2.1e-12 78.6 53 66.0
Pp3c4_25980 Physcomitrium patens HOM05D002406 ORTHO05D007964 1.1e-10 72.8 334 24.9
Sabra10G0098600 Salix brachista HOM05D002406 ORTHO05D007964 2.1e-09 68.6 347 21.9
Oeu022120.1 Olea europaea HOM05D002406 ORTHO05D007964 6.2e-09 67.0 334 23.1
unitig_52.g17148 Utricularia gibba HOM05D002406 ORTHO05D007964 8.2e-09 66.6 347 22.5
COL.COLO4_07869 Corchorus olitorius HOM05D002406 ORTHO05D007964 1.1e-08 66.2 349 22.1
CSS0033832 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D007964 1.8e-08 65.5 332 22.3
CAN.G37.10 Capsicum annuum HOM05D006590 ORTHO05D008427 1.8e-08 65.5 56 57.1
Pp3c26_5140 Physcomitrium patens HOM05D002406 ORTHO05D007964 1.8e-08 65.5 341 23.5
CDE09G1163 Ceratophyllum demersum HOM05D002406 ORTHO05D007964 2.4e-08 65.1 335 21.2
Potri.008G116800 Populus trichocarpa HOM05D002406 ORTHO05D007964 2.4e-08 65.1 350 21.4
Sabra08G0088500 Salix brachista HOM05D002406 ORTHO05D007964 2.4e-08 65.1 342 22.2
AagrBONN_evm.TU.Sc2ySwM_117.16 Anthoceros agrestis HOM05D002406 ORTHO05D007964 3.1e-08 64.7 332 21.7
THA.LOC104808195 Tarenaya hassleriana HOM05D002406 ORTHO05D007964 5.3e-08 63.9 336 23.5
Migut.K01266 Erythranthe guttata HOM05D002406 ORTHO05D007964 6.9e-08 63.5 335 23.0
CsaV3_5G025330 Cucumis sativus L. HOM05D002406 ORTHO05D007964 9.0e-08 63.2 347 20.5
SGA_v2.0_scaffold14G06823 Striga asiatica HOM05D002406 ORTHO05D007964 1.2e-07 62.8 335 22.7
Aqoxy2G01300 Aquilegia oxysepala HOM05D006590 ORTHO05D008427 2.6e-07 61.6 40 62.5
CiPaw.15G003700 Carya illinoinensis HOM05D002406 ORTHO05D007964 2.6e-07 61.6 332 21.1
CAN.G430.6 Capsicum annuum HOM05D002406 ORTHO05D007964 3.4e-07 61.2 335 21.8
Cre02.g120250 Chlamydomonas reinhardtii HOM05D002406 ORTHO05D007964 3.4e-07 61.2 262 27.1
SMO364G0095 Selaginella moellendorffii HOM05D002406 ORTHO05D007964 3.4e-07 61.2 262 24.0
ATR0681G159 Amborella trichopoda HOM05D002406 ORTHO05D007964 4.5e-07 60.8 336 22.0
Sed0011685 Sechium edule HOM05D002406 ORTHO05D007964 5.8e-07 60.5 347 19.9
Lj3A1020T56 Lonicera japonica HOM05D002406 ORTHO05D007964 7.6e-07 60.1 347 20.7
Manes.14G097700 Manihot esculenta HOM05D002406 ORTHO05D007964 7.6e-07 60.1 343 21.6
Hund25103 Selenicereus undatus HOM05D002406 ORTHO05D007964 7.6e-07 60.1 338 21.9
Thecc.02G360900 Theobroma cacao HOM05D002406 ORTHO05D007964 7.6e-07 60.1 347 20.2
FAN07G2527 Fragaria x ananassa HOM05D002406 ORTHO05D007964 1.0e-06 59.7 335 22.7
Sc04g0006710 Simmondsia chinensis HOM05D002406 ORTHO05D007964 1.0e-06 59.7 336 24.1
AL2G27800 Arabidopsis lyrata HOM05D002406 ORTHO05D007964 1.3e-06 59.3 351 23.1
MELO3C002949.2 Cucumis melo HOM05D002406 ORTHO05D007964 1.3e-06 59.3 347 19.9
Nn3g17743 Nelumbo nucifera HOM05D002406 ORTHO05D007964 1.3e-06 59.3 206 24.3
CSS0035809 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D007964 1.7e-06 58.9 183 25.7
TAR629G2259 Trochodendron aralioides HOM05D002406 ORTHO05D007964 1.7e-06 58.9 291 23.0
BcaB03g15855 Brassica carinata HOM05D002406 ORTHO05D007964 2.2e-06 58.5 291 23.4
CARHR061670 Cardamine hirsuta HOM05D002406 ORTHO05D007964 2.2e-06 58.5 336 22.9
FvH4_4g28080 Fragaria vesca HOM05D002406 ORTHO05D007964 2.2e-06 58.5 335 22.4
RcHm_v2.0_Chr4g0435821 Rosa chinensis HOM05D002406 ORTHO05D007964 2.2e-06 58.5 335 22.7
Atru.chr1.159 Acer truncatum HOM05D006590 ORTHO05D052103 2.9e-06 58.2 135 35.6
AT1G68830 Arabidopsis thaliana HOM05D002406 ORTHO05D007964 2.9e-06 58.2 351 23.1
Carub.0002s1542 Capsella rubella HOM05D002406 ORTHO05D007964 2.9e-06 58.2 336 22.0
Haze_17442 Corylus avellana HOM05D002406 ORTHO05D007964 2.9e-06 58.2 347 20.7
PGR119G0491 Punica granatum HOM05D002406 ORTHO05D007964 2.9e-06 58.2 347 20.2
MBI13_g34060_MAGBIO Magnolia biondii HOM05D002406 ORTHO05D007964 3.8e-06 57.8 333 20.4
Nitab4.5_0000597g0020 Nicotiana tabacum HOM05D002406 ORTHO05D007964 3.8e-06 57.8 290 21.0
Sp5g23940 Schrenkiella parvula HOM05D002406 ORTHO05D007964 4.9e-06 57.4 291 21.3
GSVIVG01011952001 Vitis vinifera HOM05D002406 ORTHO05D007964 4.9e-06 57.4 290 21.0
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 6.5e-06 57.0 291 22.0
DCAR_026716 Daucus carota HOM05D002406 ORTHO05D007964 6.5e-06 57.0 330 21.2
Thhalv10018353m.g Eutrema salsugineum HOM05D002406 ORTHO05D007964 6.5e-06 57.0 336 22.9
Nn4g23734 Nelumbo nucifera HOM05D002406 ORTHO05D007964 6.5e-06 57.0 291 21.0
HPP92_009835 Vanilla planifolia HOM05D002406 ORTHO05D007964 6.5e-06 57.0 348 19.3
Ah.03g137950 Amaranthus hybridus HOM05D002406 ORTHO05D007964 8.4e-06 56.6 333 22.8
EL10Ac6g14494 Beta vulgaris HOM05D002406 ORTHO05D007964 8.4e-06 56.6 349 22.6
CDE02G2223 Ceratophyllum demersum HOM05D002406 ORTHO05D007964 8.4e-06 56.6 291 19.9
MD13G1046400 Malus domestica HOM05D002406 ORTHO05D007964 8.4e-06 56.6 332 22.9


User provided reference genes

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