Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 0.0e+00 1843.2 1229 100.0
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 0.0e+00 1330.5 1254 74.7
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 0.0e+00 1172.5 1253 73.2
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 0.0e+00 1143.3 1246 64.9
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 0.0e+00 1076.2 1259 65.3
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.3e-307 1059.3 1251 63.9
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.3e-306 1054.3 1259 65.3
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 9.5e-306 1053.9 1259 65.3
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.2e-302 1042.7 1251 64.3
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.2e-289 1000.3 1254 64.4
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.7e-289 998.4 1256 62.8
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.3e-254 884.0 1265 56.8
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.6e-249 867.1 1265 56.8
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 1.2e-244 850.9 1270 53.6
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 4.5e-239 832.4 1329 52.0
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.7e-236 823.2 1266 54.4
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 6.1e-220 768.8 1270 54.8
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 1.5e-218 764.2 1080 49.3
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 1.6e-215 754.2 1261 50.5
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.7e-214 750.7 1260 50.6
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 2.9e-214 750.0 1266 52.1
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 1.5e-213 747.7 1256 43.7
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 1.8e-208 730.7 1276 52.2
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 5.9e-207 725.7 1250 47.5
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 3.4e-202 709.9 1252 50.2
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.1e-200 704.9 1276 49.2
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.5e-197 693.7 1252 49.8
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 5.6e-197 692.6 1283 44.0
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 4.7e-196 689.5 1254 51.0
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.3e-195 687.2 1281 46.2
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 3.1e-195 686.8 1247 46.8
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 2.2e-193 680.6 1252 48.3
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.9e-193 679.5 1292 46.4
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 6.0e-191 672.5 1254 50.9
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 1.7e-190 671.0 1262 47.6
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 2.6e-186 657.1 1258 45.7
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.4e-184 651.4 1019 50.0
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 2.3e-182 644.0 1033 47.6
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.6e-181 639.4 1253 47.4
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 4.9e-177 626.3 1295 42.9
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.6e-175 621.3 767 49.8
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.1e-175 620.9 1256 49.4
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 4.6e-175 619.8 1253 45.6
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 8.6e-174 615.5 1253 46.5
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.4e-168 598.2 1057 50.8
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 2.4e-168 597.4 1253 43.8
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 4.6e-167 593.2 1307 41.6
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 1.0e-166 592.0 1311 46.3
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 5.6e-165 586.3 1253 40.3
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 3.6e-164 583.6 1245 43.4
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 7.6e-162 575.9 1325 41.3
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 2.9e-161 573.9 1259 44.6
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 1.1e-160 572.0 1297 41.4
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 3.9e-158 563.5 1248 43.5
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.8e-155 554.7 1274 39.3
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 7.1e-152 542.7 1317 37.2
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 3.0e-150 537.3 1263 42.1
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.5e-149 535.0 1037 46.6
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 5.6e-149 533.1 1250 42.2
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 3.7e-148 530.4 1285 40.1
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 3.2e-144 517.3 1249 46.0
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 4.2e-144 516.9 1255 39.6
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 5.0e-137 493.4 1271 38.5
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 6.5e-137 493.0 1291 39.4
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.5e-136 491.1 808 44.1
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 3.7e-132 477.2 1258 40.5
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 4.1e-131 473.8 1132 37.8
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.0e-129 469.2 484 55.0
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 2.1e-127 461.5 798 40.7
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 6.7e-126 456.4 778 39.5
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 8.8e-126 456.1 1089 41.5
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 7.4e-125 453.0 1135 39.6
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 9.7e-125 452.6 1288 41.8
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.2e-124 451.4 1273 37.3
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 5.3e-123 446.8 1277 38.6
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 6.9e-123 446.4 1299 39.3
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 2.2e-121 441.4 1038 49.0
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.2e-120 437.6 1132 40.9
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.6e-119 435.3 706 44.5
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 6.7e-118 429.9 1288 40.5
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 8.2e-116 422.9 734 38.8
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.2e-114 419.1 1355 39.4
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 8.5e-113 412.9 1119 41.0
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 9.4e-112 409.5 1116 41.1
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.1e-111 408.3 1269 37.4
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 8.8e-110 402.9 1337 34.1
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 2.2e-105 388.3 781 37.9
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 6.1e-103 380.2 558 43.7
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 6.1e-103 380.2 1045 37.3
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.8e-102 378.6 559 43.8
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 4.0e-102 377.5 559 43.8
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 5.2e-102 377.1 559 43.8
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 5.2e-102 377.1 559 43.8
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 6.8e-102 376.7 550 43.8
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 4.4e-101 374.0 777 36.2
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 2.4e-99 368.2 1065 33.2
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 5.9e-98 363.6 622 39.5
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 7.7e-98 363.2 1065 32.7
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.2e-97 361.7 1265 36.8
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 8.5e-97 359.8 792 35.5
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 8.0e-95 353.2 616 40.1
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 1.4e-94 352.4 616 40.1
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.3e-94 351.7 664 37.8
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 4.4e-93 347.4 606 40.8
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.4e-93 347.4 1265 38.3
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.7e-92 345.5 625 38.4
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 8.3e-92 343.2 761 35.3
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.4e-91 342.4 601 38.3
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.7e-89 335.5 765 34.6
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 2.3e-89 335.1 826 33.5
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.3e-89 335.1 1034 42.6
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.5e-88 331.6 1312 36.8
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.8e-87 328.2 775 33.8
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.8e-87 328.2 543 39.0
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.2e-85 322.8 1335 39.3
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.8e-83 315.5 594 38.2
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 1.8e-83 315.5 594 38.2
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 2.0e-82 312.0 1125 37.2
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.7e-81 308.9 773 32.9
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.0e-78 299.7 593 37.8
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.0e-78 299.7 1315 32.4
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 5.2e-78 297.4 1047 33.1
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 6.8e-78 297.0 1187 38.8
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 7.5e-77 293.5 454 41.0
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 9.2e-75 286.6 880 30.5
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 7.8e-74 283.5 1351 33.9
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.2e-69 269.6 776 30.8
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.3e-65 256.1 1375 32.8
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 2.3e-65 255.4 1315 29.5
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 3.0e-65 255.0 1316 27.4
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 2.1e-63 248.8 1367 31.1
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 2.8e-63 248.4 615 34.3
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 5.8e-61 240.7 813 29.2
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 3.5e-58 231.5 356 41.3
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 8.6e-57 226.9 600 31.2
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 7.6e-53 213.8 591 31.5
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 2.2e-52 212.2 617 31.9
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 3.5e-50 204.9 539 30.6
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 2.8e-47 195.3 551 30.3
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.4e-46 193.0 639 32.2
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 5.3e-46 191.0 577 29.8
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 6.9e-46 190.7 1274 32.9
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 9.9e-45 186.8 537 30.9
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 9.9e-45 186.8 1277 36.9
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 3.5e-42 178.3 485 31.1
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 3.0e-41 175.3 557 29.4
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.6e-39 169.5 571 29.2
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 9.0e-38 163.7 1267 37.3
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 2.0e-37 162.5 1088 32.5
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.2e-34 153.3 569 29.2
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 5.3e-30 137.9 292 33.2
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 8.4e-28 130.6 568 26.9
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 2.1e-26 125.9 161 39.1
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 3.9e-25 121.7 1138 31.2
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 3.7e-23 115.2 390 27.7
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 6.3e-23 114.4 366 28.1
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.9e-22 110.9 294 38.1
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.5e-20 104.4 170 49.4
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 3.7e-15 88.6 139 48.9
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.6e-13 82.4 477 28.3
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.9e-11 76.3 134 38.1
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.9e-11 76.3 134 38.1
C06p30100 Brassica napus HOM05D003962 ORTHO05D032564 9.4e-11 73.9 145 37.2
BolC6t38171H Brassica oleracea HOM05D003962 ORTHO05D032564 9.4e-11 73.9 145 37.2
BcaC08g45378 Brassica carinata HOM05D003962 ORTHO05D032564 6.1e-10 71.2 108 42.6
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 6.7e-09 67.8 232 28.4
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.0e-08 66.2 304 30.9


User provided reference genes

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