Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 1.9e-68 262.3 129 100.0
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.4e-58 229.6 129 86.0
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.4e-57 224.9 127 85.0
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.4e-57 224.9 127 85.0
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.3e-56 223.0 127 84.3
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.3e-56 223.0 127 84.3
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 1.7e-56 222.6 127 84.3
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.2e-56 222.2 127 81.9
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 6.5e-56 220.7 127 82.7
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 8.5e-56 220.3 127 83.5
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.2e-55 218.4 127 82.7
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 5.5e-55 217.6 127 80.3
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 7.2e-55 217.2 127 80.3
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 7.2e-55 217.2 127 80.3
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 9.4e-55 216.9 127 81.9
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 2.7e-54 215.3 127 81.9
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 4.7e-54 214.5 127 81.1
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 6.1e-54 214.2 128 80.5
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 7.9e-54 213.8 127 80.3
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.0e-53 213.4 124 82.3
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.4e-53 213.0 127 78.7
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.8e-53 212.6 124 79.8
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 2.3e-53 212.2 128 77.3
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 5.2e-53 211.1 127 79.5
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 5.2e-53 211.1 127 78.7
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 5.2e-53 211.1 127 78.7
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 8.8e-53 210.3 127 79.5
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 8.8e-53 210.3 127 79.5
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 79.5
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 1.5e-52 209.5 125 80.0
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 77.2
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 3.3e-52 208.4 127 78.0
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 3.3e-52 208.4 127 76.4
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 3.3e-52 208.4 127 79.5
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 4.4e-52 208.0 127 77.2
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.4e-52 208.0 127 78.0
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 4.4e-52 208.0 124 77.4
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 4.4e-52 208.0 123 77.2
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 4.4e-52 208.0 129 76.7
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 4.4e-52 208.0 129 76.7
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 77.2
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 5.7e-52 207.6 127 79.5
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 7.4e-52 207.2 124 76.6
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 7.4e-52 207.2 124 77.4
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 9.7e-52 206.8 124 78.2
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 9.7e-52 206.8 124 78.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 9.7e-52 206.8 127 76.4
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 78.7
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 76.6
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 76.6
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.7e-51 206.1 118 83.1
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 1.7e-51 206.1 127 75.6
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 76.4
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 76.4
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 2.2e-51 205.7 127 76.4
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.2e-51 205.7 118 83.1
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 2.2e-51 205.7 124 77.4
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 2.8e-51 205.3 124 76.6
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 76.4
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 74.8
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 3.7e-51 204.9 127 76.4
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 4.8e-51 204.5 127 74.8
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 76.4
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 76.4
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 76.4
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 6.3e-51 204.1 127 74.8
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 6.3e-51 204.1 125 77.6
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 76.4
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 1.1e-50 203.4 124 75.8
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.1e-50 203.4 124 75.8
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.4e-50 203.0 124 76.6
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.4e-50 203.0 127 75.6
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 1.8e-50 202.6 128 75.8
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 2.4e-50 202.2 124 74.2
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 74.0
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 77.2
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 2.4e-50 202.2 122 77.9
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 4.1e-50 201.4 124 76.6
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 76.4
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 5.3e-50 201.1 127 73.2
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 7.0e-50 200.7 127 72.4
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 7.0e-50 200.7 124 76.6
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 9.1e-50 200.3 125 76.0
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 1.2e-49 199.9 124 75.8
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.2e-49 199.9 127 74.0
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.2e-49 199.9 127 74.0
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 1.2e-49 199.9 124 75.8
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 1.6e-49 199.5 120 75.8
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 74.8
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.0e-49 199.1 127 74.0
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 2.0e-49 199.1 124 75.0
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 2.6e-49 198.7 125 76.0
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 2.6e-49 198.7 124 73.4
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 2.6e-49 198.7 128 75.0
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.5e-49 198.4 129 72.9
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 3.5e-49 198.4 120 75.0
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 5.9e-49 197.6 125 75.2
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 1.0e-48 196.8 128 75.0
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 72.4
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 1.0e-48 196.8 124 75.8
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.3e-48 196.4 129 72.9
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 1.3e-48 196.4 124 73.4
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 1.3e-48 196.4 124 72.6
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 3.8e-48 194.9 127 73.2
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 8.5e-48 193.7 129 72.9
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 8.5e-48 193.7 120 74.2
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 9.4e-47 190.3 125 69.6
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 6.7e-45 184.1 129 71.3
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 2.0e-44 182.6 167 56.3
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 9.7e-44 180.3 106 82.1
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 1.3e-43 179.9 109 75.2
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 8.2e-43 177.2 115 73.0
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.0e-40 170.2 127 66.9
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 1.0e-40 170.2 130 68.5
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 1.5e-36 156.4 87 87.4
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 3.7e-35 151.8 82 80.5
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 6.3e-35 151.0 104 71.2
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.0e-32 141.4 81 80.2
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 5.4e-26 121.3 88 65.9
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 9.2e-26 120.6 76 73.7
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 1.2e-25 120.2 98 62.2
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 1.2e-25 120.2 89 67.4
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 5.9e-25 117.9 74 77.0
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 6.1e-22 107.8 127 51.2
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.8e-21 106.3 61 82.0
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.0e-20 102.8 67 76.1
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.7e-19 99.8 57 82.5
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 4.9e-19 98.2 67 74.6
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 1.7e-16 89.7 82 48.8
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 6.6e-16 87.8 97 47.4
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 2.8e-14 82.4 51 80.4
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 4.4e-12 75.1 116 44.8
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 6.0e-09 64.7 49 53.1
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.5e-07 60.1 36 75.0
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 1.9e-07 59.7 40 62.5


User provided reference genes

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