Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G307200 Prunus persica HOM05D004525 ORTHO05D005295 7.7e-98 360.5 188 100.0
Prupe.5G130000 Prunus persica HOM05D004525 ORTHO05D005295 1.2e-90 336.7 191 93.2
MD14G1136300 Malus domestica HOM05D004525 ORTHO05D005295 7.2e-88 327.4 189 91.0
MD06G1119500 Malus domestica HOM05D004525 ORTHO05D005295 1.2e-87 326.6 188 90.4
FAN07G0034 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.4e-85 317.4 189 87.3
RcHm_v2.0_Chr1g0332661 Rosa chinensis HOM05D004525 ORTHO05D005295 7.4e-85 317.4 189 88.4
FvH4_4g11450 Fragaria vesca HOM05D004525 ORTHO05D005295 1.7e-84 316.2 189 86.8
RcHm_v2.0_Chr6g0273561 Rosa chinensis HOM05D004525 ORTHO05D005295 1.1e-83 313.5 189 87.3
FAN22G0758 Fragaria x ananassa HOM05D004525 ORTHO05D005295 7.7e-82 307.4 190 85.8
Potri.001G083801 Populus trichocarpa HOM05D004525 ORTHO05D005295 3.8e-81 305.1 189 85.2
Gohir.A12G240200 Gossypium hirsutum HOM05D004525 ORTHO05D005295 4.2e-80 301.6 189 83.6
Manes.09G101000 Manihot esculenta HOM05D004525 ORTHO05D005295 4.2e-80 301.6 186 83.9
Duzib068G1021 Durio zibethinus HOM05D004525 ORTHO05D005295 5.5e-80 301.2 189 83.1
Thecc.03G220900 Theobroma cacao HOM05D004525 ORTHO05D005295 5.5e-80 301.2 189 83.6
Duzib205G1187 Durio zibethinus HOM05D004525 ORTHO05D005295 9.4e-80 300.4 178 86.0
COL.COLO4_10799 Corchorus olitorius HOM05D004525 ORTHO05D005295 3.6e-79 298.5 189 82.0
Sabra01G0060700 Salix brachista HOM05D004525 ORTHO05D005295 3.6e-79 298.5 187 84.5
Gorai.008G258800 Gossypium raimondii HOM05D004525 ORTHO05D005295 3.0e-78 295.4 189 82.0
QL12p036922 Quercus lobata HOM05D004525 ORTHO05D005295 5.2e-78 294.7 189 81.0
Atru.chr9.1879 Acer truncatum HOM05D004525 ORTHO05D005295 6.7e-78 294.3 190 81.6
QL02p027997 Quercus lobata HOM05D004525 ORTHO05D005295 6.7e-78 294.3 189 80.4
Gohir.D12G241500 Gossypium hirsutum HOM05D004525 ORTHO05D005295 8.8e-78 293.9 189 81.5
Cfa011920 Carpinus fangiana HOM05D004525 ORTHO05D005295 1.5e-77 293.1 186 83.3
Haze_04010 Corylus avellana HOM05D004525 ORTHO05D005295 1.5e-77 293.1 185 82.7
Potri.003G146900 Populus trichocarpa HOM05D004525 ORTHO05D005295 1.5e-77 293.1 186 83.3
CiPaw.11G112000 Carya illinoinensis HOM05D004525 ORTHO05D005295 2.6e-77 292.4 190 82.1
GSVIVG01019654001 Vitis vinifera HOM05D004525 ORTHO05D005295 3.3e-77 292.0 193 80.3
Cfa006748 Carpinus fangiana HOM05D004525 ORTHO05D005295 4.4e-77 291.6 185 82.7
Dinv38179 Davidia involucrata HOM05D004525 ORTHO05D005295 5.7e-77 291.2 173 86.1
Sabra03G0106900 Salix brachista HOM05D004525 ORTHO05D005295 1.3e-76 290.0 186 82.3
Ciclev10022441m.g Citrus clementina HOM05D004525 ORTHO05D005295 1.4e-75 286.6 186 80.6
Cpa.g.sc27.182 Carica papaya HOM05D004525 ORTHO05D005295 3.1e-75 285.4 190 80.0
TWI56G0194 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 4.1e-75 285.0 189 78.8
PGR031G2275 Punica granatum HOM05D004525 ORTHO05D005295 1.2e-74 283.5 189 79.4
THA.LOC104809303 Tarenaya hassleriana HOM05D004525 ORTHO05D005295 1.2e-74 283.5 187 79.1
Lsat_1_v5_gn_3_14420 Lactuca sativa HOM05D004525 ORTHO05D005295 4.5e-74 281.6 195 76.9
Actinidia22207 Actinidia chinensis HOM05D004525 ORTHO05D005295 5.9e-74 281.2 190 76.8
HanXRQChr17g0534221 Helianthus annuus HOM05D004525 ORTHO05D005295 2.2e-73 279.3 191 77.5
CiPaw.12G077100 Carya illinoinensis HOM05D004525 ORTHO05D005295 1.1e-72 276.9 189 77.2
Sed0024458 Sechium edule HOM05D004525 ORTHO05D005295 1.5e-72 276.6 191 75.9
CSS0029651 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.9e-72 276.2 188 77.1
CSS0036474 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 9.4e-72 273.9 188 76.6
CSS0049671 Camellia sinensis var. sinensis HOM05D004525 ORTHO05D005295 1.2e-71 273.5 188 76.6
Eucgr.C04229 Eucalyptus grandis HOM05D004525 ORTHO05D005295 4.7e-71 271.6 191 75.9
SGA_v2.0_scaffold14G07039 Striga asiatica HOM05D004525 ORTHO05D005295 4.7e-71 271.6 194 72.7
SGA_v2.0_scaffold36G14274 Striga asiatica HOM05D004525 ORTHO05D005295 4.7e-71 271.6 194 72.7
Nitab4.5_0001367g0040 Nicotiana tabacum HOM05D004525 ORTHO05D005295 6.1e-71 271.2 197 72.6
Solyc08g065160.3 Solanum lycopersicum HOM05D004525 ORTHO05D005295 1.0e-70 270.4 200 71.5
Sopen08g018760 Solanum pennellii HOM05D004525 ORTHO05D005295 1.0e-70 270.4 200 71.5
PGSC0003DMG400029951 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.0e-70 270.4 200 71.5
Ca_17957_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 1.4e-70 270.0 187 76.5
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla HOM05D004525 ORTHO05D005295 1.4e-70 270.0 157 86.6
Nitab4.5_0012632g0010 Nicotiana tabacum HOM05D004525 ORTHO05D005295 2.3e-70 269.2 197 72.6
TWI36G0523 Tripterygium wilfordii HOM05D004525 ORTHO05D005295 2.3e-70 269.2 171 80.7
ClCG10G000810 Citrullus lanatus HOM05D004525 ORTHO05D005295 3.0e-70 268.9 188 75.5
TAR629G2664 Trochodendron aralioides HOM05D004525 ORTHO05D005295 3.0e-70 268.9 188 77.1
Ca_02991_v3 Cicer arietinum L. HOM05D004525 ORTHO05D005295 5.2e-70 268.1 187 76.5
ECA246G3328 Erigeron canadensis HOM05D004525 ORTHO05D005295 6.8e-70 267.7 156 86.5
Thhalv10008848m.g Eutrema salsugineum HOM05D004525 ORTHO05D005295 6.8e-70 267.7 190 73.2
CsaV3_3G000870 Cucumis sativus L. HOM05D004525 ORTHO05D005295 8.8e-70 267.3 188 76.1
Glyma.08G296500 Glycine max HOM05D004525 ORTHO05D005295 8.8e-70 267.3 191 75.4
AL1G39060 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 1.2e-69 266.9 189 73.0
Nn3g18812 Nelumbo nucifera HOM05D004525 ORTHO05D005295 1.2e-69 266.9 186 76.3
VMungo0251G0643 Vigna mungo HOM05D004525 ORTHO05D005295 1.2e-69 266.9 185 76.8
Haze_09177 Corylus avellana HOM05D004525 ORTHO05D005295 4.4e-69 265.0 173 80.3
MBI04_g25309_MAGBIO Magnolia biondii HOM05D004525 ORTHO05D005295 4.4e-69 265.0 189 76.2
Phvul.003G069600 Phaseolus vulgaris HOM05D004525 ORTHO05D005295 4.4e-69 265.0 191 74.3
AT1G26665 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 5.7e-69 264.6 188 72.3
Lalb_Chr12g0205381 Lupinus albus HOM05D004525 ORTHO05D005295 5.7e-69 264.6 187 74.3
Cc08_g16770 Coffea canephora HOM05D004525 ORTHO05D005295 3.7e-68 261.9 157 82.8
DCAR_011870 Daucus carota HOM05D004525 ORTHO05D005295 3.7e-68 261.9 175 77.7
Aa31LG9G260 Aethionema arabicum HOM05D004525 ORTHO05D005295 6.3e-68 261.2 207 68.6
EL10Ac5g12425 Beta vulgaris HOM05D004525 ORTHO05D005295 8.3e-68 260.8 192 71.4
Migut.E00628 Erythranthe guttata HOM05D004525 ORTHO05D005295 1.1e-67 260.4 184 72.8
Lalb_Chr13g0294931 Lupinus albus HOM05D004525 ORTHO05D005295 1.4e-67 260.0 187 73.8
Sp1g22150 Schrenkiella parvula HOM05D004525 ORTHO05D005295 1.8e-67 259.6 192 69.8
SalBow6G4763 Salvia bowleyana HOM05D004525 ORTHO05D005295 4.1e-67 258.5 179 72.6
BcaC06g35131 Brassica carinata HOM05D004525 ORTHO05D005295 7.0e-67 257.7 190 72.1
A07p13030 Brassica napus HOM05D001252 ORTHO05D005295 7.0e-67 257.7 185 73.0
Rhsim07G0078000 Rhododendron simsii HOM05D004525 ORTHO05D005295 1.2e-66 256.9 193 71.0
C07p19480 Brassica napus HOM05D001252 ORTHO05D005295 2.0e-66 256.1 190 71.6
Glyma.18G125700 Glycine max HOM05D004525 ORTHO05D005295 2.0e-66 256.1 191 73.8
MSTRG.24865 Avicennia marina HOM05D004525 ORTHO05D005295 2.7e-66 255.8 188 69.7
FAN17G2704 Fragaria x ananassa HOM05D004525 ORTHO05D005295 3.5e-66 255.4 191 73.8
Aqoxy5G04330 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 4.5e-66 255.0 186 72.6
Sc01g0010720 Simmondsia chinensis HOM05D004525 ORTHO05D005295 5.9e-66 254.6 186 72.6
Aqoxy3G00526 Aquilegia oxysepala HOM05D004525 ORTHO05D005295 1.0e-65 253.8 186 72.6
BcaB03g14082 Brassica carinata HOM05D004525 ORTHO05D005295 1.3e-65 253.4 191 70.2
DCAR_006547 Daucus carota HOM05D004525 ORTHO05D005295 1.7e-65 253.1 164 79.3
Medtr8g085570 Medicago truncatula HOM05D004525 ORTHO05D005295 1.7e-65 253.1 187 71.1
vmacro11499 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.7e-65 253.1 169 78.7
MSTRG.12201 Avicennia marina HOM05D004525 ORTHO05D005295 2.9e-65 252.3 196 67.3
PSO017G1681 Papaver somniferum HOM05D004525 ORTHO05D005295 2.9e-65 252.3 189 70.9
BraA07t29074Z Brassica rapa HOM05D001252 ORTHO05D005295 3.8e-65 251.9 188 70.2
CARHR212640 Cardamine hirsuta HOM05D004525 ORTHO05D005295 1.1e-64 250.4 186 69.4
TPR.G15828 Trifolium pratense HOM05D004525 ORTHO05D005295 1.5e-64 250.0 187 72.2
PSO478G2085 Papaver somniferum HOM05D004525 ORTHO05D005295 1.9e-64 249.6 189 70.4
Hund11348 Selenicereus undatus HOM05D004525 ORTHO05D005295 4.2e-64 248.4 164 77.4
Zm00001eb319380 Zea mays HOM05D004525 ORTHO05D005295 4.2e-64 248.4 181 74.6
unitig_744.g24303 Utricularia gibba HOM05D004525 ORTHO05D005295 5.5e-64 248.1 187 67.4
Psat7g073160 Pisum sativum HOM05D004525 ORTHO05D005295 9.5e-64 247.3 187 70.6
Carub.0001s2436 Capsella rubella HOM05D004525 ORTHO05D005295 1.2e-63 246.9 192 67.7
CANSAT56G2042 Cannabis sativa HOM05D004525 ORTHO05D005295 1.6e-63 246.5 206 67.5
Lj8A200T57 Lonicera japonica HOM05D004525 ORTHO05D005295 1.6e-63 246.5 151 83.4
CARHR025300 Cardamine hirsuta HOM05D004525 ORTHO05D005295 2.1e-63 246.1 190 68.9
HPP92_025871 Vanilla planifolia HOM05D004525 ORTHO05D005295 2.1e-63 246.1 177 72.9
Zm00001eb103320 Zea mays HOM05D004525 ORTHO05D005295 4.7e-63 245.0 183 73.2
Atru.chr3.1913 Acer truncatum HOM05D004525 ORTHO05D005295 1.8e-62 243.0 164 76.8
ATR0620G086 Amborella trichopoda HOM05D004525 ORTHO05D005295 2.3e-62 242.7 169 74.6
AUR62007057 Chenopodium quinoa HOM05D004525 ORTHO05D005295 8.8e-62 240.7 186 68.3
AL7G47302 Arabidopsis lyrata HOM05D004525 ORTHO05D005295 2.0e-61 239.6 187 69.0
AT5G41910 Arabidopsis thaliana HOM05D004525 ORTHO05D005295 1.7e-60 236.5 188 68.6
Os09g0528300 Oryza sativa ssp. japonica HOM05D004525 ORTHO05D005295 2.2e-60 236.1 156 77.6
Psat7g073280 Pisum sativum HOM05D004525 ORTHO05D005295 4.9e-60 235.0 165 75.2
TPR.G11962 Trifolium pratense HOM05D004525 ORTHO05D005295 6.3e-60 234.6 187 69.0
Ah.12g053230 Amaranthus hybridus HOM05D004525 ORTHO05D005295 8.3e-60 234.2 156 75.0
vmacro13851 Vaccinium macrocarpon HOM05D004525 ORTHO05D005295 1.4e-59 233.4 192 67.2
Oeu022035.1 Olea europaea HOM05D004525 ORTHO05D005295 2.4e-59 232.6 253 56.1
Lj4g0018067 Lotus japonicus HOM05D004525 ORTHO05D005295 3.1e-59 232.3 193 66.8
FAN08G2166 Fragaria x ananassa HOM05D000319 ORTHO05D035382 9.2e-59 230.7 149 79.2
BolC7t42467H Brassica oleracea HOM05D001252 ORTHO05D001661 2.0e-58 229.6 168 72.6
unitig_21.g20890 Utricularia gibba HOM05D004525 ORTHO05D005295 2.7e-58 229.2 195 63.1
CDE07G1557 Ceratophyllum demersum HOM05D004525 ORTHO05D005295 2.9e-57 225.7 163 71.8
Lj4g0019040 Lotus japonicus HOM05D004525 ORTHO05D005295 3.3e-56 222.2 168 71.4
Peaxi162Scf01444g00013 Petunia axillaris HOM05D004525 ORTHO05D005295 9.5e-56 220.7 181 66.3
BraA09t39504Z Brassica rapa HOM05D004525 ORTHO05D005295 6.1e-55 218.0 187 63.1
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea HOM05D004525 ORTHO05D005295 2.2e-52 209.5 191 62.3
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea HOM05D004525 ORTHO05D005295 4.9e-52 208.4 191 61.8
Psat7g074000 Pisum sativum HOM05D004525 ORTHO05D005295 5.4e-51 204.9 165 67.3
Cfa007058 Carpinus fangiana HOM05D004525 ORTHO05D005295 6.6e-49 198.0 131 79.4
FvH4_5g19692 Fragaria vesca HOM05D004525 ORTHO05D005295 2.5e-48 196.1 159 67.3
Psat7g072880 Pisum sativum HOM05D004525 ORTHO05D005295 3.3e-48 195.7 152 66.4
C05p24330 Brassica napus HOM05D004525 ORTHO05D005295 2.8e-47 192.6 148 68.9
MELO3C013773.2 Cucumis melo HOM05D004525 ORTHO05D005295 2.3e-46 189.5 231 52.4
Actinidia27285 Actinidia chinensis HOM05D004525 ORTHO05D005295 4.1e-43 178.7 186 57.5
Peaxi162Scf00640g00032 Petunia axillaris HOM05D004525 ORTHO05D005295 1.6e-42 176.8 132 68.9
Nitab4.5_0017193g0030 Nicotiana tabacum HOM05D004525 ORTHO05D005295 7.8e-42 174.5 155 61.9
AUR62019920 Chenopodium quinoa HOM05D004525 ORTHO05D005295 2.3e-41 172.9 109 77.1
TAR375G0036 Trochodendron aralioides HOM05D004525 ORTHO05D005295 5.6e-40 168.3 104 79.8
Mapoly0151s0039 Marchantia polymorpha HOM05D004525 ORTHO05D005295 1.1e-38 164.1 167 49.7
PGSC0003DMG400039131 Solanum tuberosum HOM05D004525 ORTHO05D005295 4.0e-38 162.2 130 65.4
PGSC0003DMG400040735 Solanum tuberosum HOM05D004525 ORTHO05D005295 2.2e-36 156.4 131 64.9
Pp3c11_16910 Physcomitrium patens HOM05D004525 ORTHO05D005295 2.9e-36 156.0 148 50.0
PGSC0003DMG400043501 Solanum tuberosum HOM05D004525 ORTHO05D005295 6.4e-36 154.8 131 63.4
PGSC0003DMG400008601 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.4e-35 153.7 131 63.4
PGSC0003DMG400017120 Solanum tuberosum HOM05D004525 ORTHO05D005295 1.2e-34 150.6 131 64.1
SMO301G0053 Selaginella moellendorffii HOM05D004525 ORTHO05D005295 3.5e-34 149.1 160 50.6
BcaC05g26400 Brassica carinata HOM05D004525 ORTHO05D005295 1.7e-33 146.7 91 74.7
CAN.G6.3 Capsicum annuum HOM05D004525 ORTHO05D005295 3.9e-33 145.6 82 85.4
RcHm_v2.0_Chr7g0187021 Rosa chinensis HOM05D004525 ORTHO05D005295 2.5e-32 142.9 188 50.5
A09p40080 Brassica napus HOM05D004525 ORTHO05D005295 1.6e-31 140.2 118 62.7
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis HOM05D004525 ORTHO05D005295 3.6e-31 139.0 144 47.9
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis HOM05D004525 ORTHO05D005295 8.1e-31 137.9 140 47.9
SEGI_32557 Sequoiadendron giganteum HOM05D004525 ORTHO05D005295 2.4e-30 136.3 132 55.3
Nitab4.5_0002724g0080 Nicotiana tabacum HOM05D004525 ORTHO05D005295 3.2e-27 125.9 119 58.0
CAN.G1631.10 Capsicum annuum HOM05D004525 ORTHO05D005295 4.2e-19 99.0 87 63.2
RcHm_v2.0_Chr5g0055281 Rosa chinensis HOM05D004525 ORTHO05D005295 1.5e-16 90.5 59 74.6
SGA_v2.0_scaffold104G30259 Striga asiatica HOM05D004525 ORTHO05D005295 8.1e-15 84.7 173 40.5
BcaB05g21931 Brassica carinata HOM05D004525 ORTHO05D005295 1.1e-11 74.3 79 60.8
TAR374G0495 Trochodendron aralioides HOM05D004525 ORTHO05D005295 2.1e-10 70.1 104 47.1
SpUn0008_0090 Schrenkiella parvula HOM05D000004 ORTHO05D027095 1.4e-06 57.4 43 60.5
RcHm_v2.0_Chr2g0098501 Rosa chinensis HOM05D004525 ORTHO05D005295 3.1e-06 56.2 87 41.4
Cre12.g556450 Chlamydomonas reinhardtii HOM05D004525 ORTHO05D005295 5.3e-06 55.5 135 29.6


User provided reference genes

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