Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 8.3e-146 520.4 269 100.0
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 6.4e-114 414.5 279 80.6
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 1.3e-106 390.2 286 74.5
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.1e-105 387.1 290 72.4
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.1e-105 387.1 290 72.4
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.9e-105 386.3 306 69.3
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.2e-104 383.6 296 70.9
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 3.5e-104 382.1 294 71.1
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.0e-103 380.6 294 71.4
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 7.3e-102 374.4 278 74.5
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 6.2e-101 371.3 321 65.7
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 2.6e-99 365.9 287 70.0
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 4.9e-98 361.7 288 68.8
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 5.4e-97 358.2 277 70.4
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 1.0e-95 354.0 272 70.6
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 1.1e-94 350.5 277 68.2
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 1.9e-94 349.7 276 69.2
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 3.3e-94 349.0 277 67.9
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 4.3e-94 348.6 282 69.5
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 9.6e-94 347.4 276 70.7
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 2.8e-93 345.9 286 68.5
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 4.8e-93 345.1 278 70.5
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 8.1e-93 344.4 277 67.1
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 5.8e-91 338.2 277 67.1
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 9.9e-91 337.4 289 67.5
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 3.8e-90 335.5 276 65.6
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 4.9e-90 335.1 287 64.5
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.4e-89 333.6 290 65.2
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 1.2e-88 330.5 278 65.1
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 6.0e-88 328.2 278 65.8
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 1.5e-86 323.6 272 63.6
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 3.3e-86 322.4 286 64.0
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 1.6e-85 320.1 277 63.5
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 2.4e-84 316.2 282 63.1
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 2.4e-84 316.2 284 66.2
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 2.4e-84 316.2 278 62.6
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 4.0e-84 315.5 291 62.2
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 4.0e-84 315.5 278 63.3
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 1.2e-83 313.9 282 62.8
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.2e-83 313.9 296 63.5
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 2.6e-83 312.8 276 64.5
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 3.4e-83 312.4 286 61.9
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 1.7e-82 310.1 279 63.4
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 1.1e-81 307.4 276 62.0
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 1.4e-81 307.0 295 60.7
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 1.9e-81 306.6 283 61.5
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 2.5e-81 306.2 278 62.2
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 3.2e-81 305.8 295 60.0
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 7.1e-81 304.7 276 62.0
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 6.0e-80 301.6 353 51.8
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 6.0e-80 301.6 271 62.0
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 1.0e-79 300.8 288 61.5
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 2.3e-79 299.7 282 59.2
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 1.1e-78 297.4 281 60.9
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 1.9e-78 296.6 308 59.1
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 1.9e-78 296.6 360 50.6
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.5e-78 296.2 277 62.1
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 3.3e-78 295.8 280 60.4
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 9.6e-78 294.3 281 59.4
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 4.8e-77 292.0 288 58.7
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 1.4e-76 290.4 287 59.2
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 1.4e-76 290.4 292 59.9
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 1.8e-76 290.0 284 59.9
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 3.1e-76 289.3 294 57.5
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 4.1e-76 288.9 241 64.7
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 5.3e-76 288.5 284 59.5
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 5.3e-76 288.5 280 61.4
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 1.0e-74 284.3 283 59.4
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 1.7e-74 283.5 326 51.5
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 1.7e-74 283.5 276 57.6
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 5.0e-74 282.0 289 58.1
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 3.2e-73 279.3 283 58.3
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 4.2e-73 278.9 285 57.9
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 1.2e-72 277.3 268 58.6
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 2.1e-72 276.6 283 57.2
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 7.9e-72 274.6 275 56.7
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 1.8e-71 273.5 273 55.7
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 3.0e-71 272.7 284 58.8
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 5.1e-71 271.9 274 55.8
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 1.5e-70 270.4 290 54.5
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 1.3e-69 267.3 281 55.9
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 6.3e-69 265.0 279 56.6
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 8.2e-69 264.6 277 54.5
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 1.8e-68 263.5 274 54.7
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 1.8e-68 263.5 296 50.3
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 3.1e-68 262.7 274 55.1
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 5.3e-68 261.9 277 55.2
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 6.9e-68 261.5 273 54.2
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 1.5e-67 260.4 292 52.4
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 1.0e-66 257.7 270 54.4
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 8.5e-66 254.6 273 53.1
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 1.9e-65 253.4 290 53.1
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 3.2e-65 252.7 285 54.0
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 5.5e-65 251.9 276 50.7
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 5.5e-65 251.9 290 53.1
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 1.6e-64 250.4 272 51.1
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 2.7e-64 249.6 286 52.1
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 1.0e-63 247.7 270 52.6
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 1.0e-63 247.7 270 52.6
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 3.0e-63 246.1 278 52.5
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 3.9e-63 245.7 275 52.0
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 8.8e-63 244.6 274 52.6
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 5.7e-62 241.9 272 51.1
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 6.3e-61 238.4 278 52.5
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 1.4e-60 237.3 233 54.5
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 1.8e-60 236.9 282 50.0
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 6.9e-60 235.0 269 50.6
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 1.2e-59 234.2 271 50.9
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 1.2e-59 234.2 269 50.2
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 1.2e-59 234.2 271 50.9
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 1.2e-59 234.2 271 50.9
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 2.9e-58 229.6 276 53.3
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 2.5e-57 226.5 193 67.4
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 7.2e-57 224.9 476 36.1
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 1.2e-56 224.2 278 50.0
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 6.7e-55 218.4 178 67.4
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 1.1e-54 217.6 271 50.2
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 1.3e-53 214.2 296 46.3
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 2.8e-53 213.0 507 33.9
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 2.2e-50 203.4 270 51.1
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.2e-46 191.0 170 65.9
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 5.3e-44 182.2 286 42.7
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 5.3e-44 182.2 225 47.6
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 1.9e-41 173.7 283 44.2
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 9.4e-41 171.4 283 44.2
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 8.0e-40 168.3 144 66.0
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 1.4e-39 167.5 283 42.8
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 2.3e-39 166.8 169 53.3
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 9.8e-38 161.4 275 40.7
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 6.3e-37 158.7 122 71.3
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 8.3e-37 158.3 172 54.1
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 1.6e-35 154.1 175 53.7
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 2.0e-35 153.7 269 36.8
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 7.7e-35 151.8 259 40.5
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 6.3e-29 132.1 102 69.6
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 2.0e-27 127.1 278 38.5
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 1.7e-26 124.0 111 59.5
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 6.6e-26 122.1 175 45.7
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 8.0e-24 115.2 269 32.7
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 5.2e-23 112.5 146 43.2
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 3.4e-22 109.8 263 36.9
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 2.9e-21 106.7 106 58.5
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 1.2e-16 91.3 290 29.7
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 2.0e-14 84.0 158 37.3
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 1.3e-13 81.3 149 38.3
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.9e-13 79.3 150 36.0
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 8.3e-13 78.6 168 34.5
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 1.2e-11 74.7 78 52.6
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 1.2e-11 74.7 78 52.6
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 2.0e-11 73.9 179 35.2
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 7.8e-11 72.0 176 35.2
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 1.7e-10 70.9 151 33.1
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 3.9e-10 69.7 152 36.2
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 6.6e-10 68.9 166 31.3
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.6e-10 68.9 169 31.4
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 6.6e-10 68.9 146 30.8
SEGI_09179 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 8.6e-10 68.6 149 32.9
SEGI_17958 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 8.6e-10 68.6 157 31.2
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 1.5e-09 67.8 88 40.9
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 1.9e-09 67.4 157 32.5
Sabra12G0063200 Salix brachista HOM05D004891 ORTHO05D005997 2.5e-09 67.0 84 48.8
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.3e-09 66.6 160 32.5
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 4.3e-09 66.2 103 43.7
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 9.5e-09 65.1 194 29.9
SGA_v2.0_scaffold58G20583 Striga asiatica HOM05D001401 ORTHO05D006368 1.1e-07 61.6 166 32.5
Oeu034083.1 Olea europaea HOM05D001401 ORTHO05D006368 1.4e-07 61.2 257 25.7
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 1.8e-07 60.8 165 32.1
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 5.2e-07 59.3 159 31.4
MSTRG.5386 Avicennia marina HOM05D001401 ORTHO05D006368 8.9e-07 58.5 117 35.0
MBI16_g36202_MAGBIO Magnolia biondii HOM05D001401 ORTHO05D002222 1.2e-06 58.2 73 43.8
Sp3g29340 Schrenkiella parvula HOM05D001401 ORTHO05D006368 1.2e-06 58.2 171 30.4
Hma1.2p1_0584F.1_g183440 Hydrangea macrophylla HOM05D001401 ORTHO05D006368 1.5e-06 57.8 169 34.3
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 2.0e-06 57.4 159 31.4
MSTRG.20113 Avicennia marina HOM05D001401 ORTHO05D006368 2.6e-06 57.0 184 29.9
TAR381G0019 Trochodendron aralioides HOM05D001401 ORTHO05D006368 2.6e-06 57.0 153 30.7
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 3.4e-06 56.6 238 26.9
RcHm_v2.0_Chr6g0262181 Rosa chinensis HOM05D001401 ORTHO05D006368 3.4e-06 56.6 154 33.8
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 3.4e-06 56.6 273 22.7
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 4.4e-06 56.2 74 43.2
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 7.5e-06 55.5 81 39.5
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 9.9e-06 55.1 88 37.5
Sed0023769 Sechium edule HOM05D001401 ORTHO05D006368 9.9e-06 55.1 149 30.2


User provided reference genes

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