Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 2.5e-122 442.2 233 100.0
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 5.0e-99 364.8 227 85.9
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 6.2e-97 357.8 227 84.6
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.0e-87 326.2 233 75.5
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 5.8e-87 324.7 233 75.1
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.3e-86 323.6 233 74.7
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.7e-86 323.2 233 76.0
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 8.3e-86 320.9 235 74.0
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.1e-85 320.5 233 74.7
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.1e-85 320.5 237 75.1
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.4e-85 320.1 238 74.8
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 1.9e-85 319.7 235 74.0
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 2.7e-84 315.8 236 74.2
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 1.7e-83 313.2 241 73.0
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 5.1e-83 311.6 235 72.3
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 1.1e-82 310.5 233 72.1
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 9.5e-82 307.4 234 73.9
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 1.2e-81 307.0 234 74.4
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 1.6e-81 306.6 172 91.9
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 2.1e-81 306.2 238 70.6
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 6.2e-81 304.7 237 70.9
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 5.2e-80 301.6 233 71.2
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 6.8e-80 301.2 230 72.2
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 8.9e-80 300.8 233 74.2
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 1.2e-79 300.4 226 73.9
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 1.2e-79 300.4 237 69.6
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.0e-79 299.7 237 70.0
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 4.4e-79 298.5 235 71.1
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 5.8e-79 298.1 183 85.2
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 9.9e-79 297.4 233 68.7
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 2.2e-78 296.2 235 69.4
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 2.2e-78 296.2 237 68.4
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 2.2e-78 296.2 195 79.0
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 2.2e-78 296.2 230 71.7
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 2.9e-78 295.8 182 82.4
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 2.9e-78 295.8 182 81.3
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 3.8e-78 295.4 182 81.9
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 1.4e-77 293.5 197 76.6
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 4.1e-77 292.0 233 69.5
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 4.1e-77 292.0 207 73.9
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 5.4e-77 291.6 207 73.9
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 7.1e-77 291.2 189 78.8
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 7.1e-77 291.2 211 74.4
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 7.1e-77 291.2 233 70.0
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 9.2e-77 290.8 224 69.6
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 9.2e-77 290.8 197 76.6
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 9.2e-77 290.8 252 64.7
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.2e-76 290.4 207 73.4
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.6e-76 290.0 233 69.1
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.6e-76 290.0 237 69.2
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.7e-76 289.3 226 71.7
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 3.5e-76 288.9 239 67.4
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 7.8e-76 287.7 234 67.9
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 1.3e-75 287.0 227 70.5
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 1.7e-75 286.6 212 72.6
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 1.1e-74 283.9 189 77.8
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 1.1e-74 283.9 221 70.1
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 1.1e-74 283.9 221 70.1
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 1.2e-73 280.4 204 71.1
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 3.6e-73 278.9 185 77.3
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 8.1e-73 277.7 235 68.1
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 8.1e-73 277.7 184 76.6
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 2.4e-72 276.2 178 79.2
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 8.9e-72 274.2 185 75.7
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 4.4e-71 271.9 220 67.3
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 1.3e-70 270.4 224 67.9
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 2.9e-70 269.2 225 62.7
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.1e-69 267.3 205 69.3
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 3.2e-69 265.8 181 72.9
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 5.4e-69 265.0 180 71.7
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 7.1e-69 264.6 180 71.1
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 9.3e-69 264.2 226 62.8
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 1.2e-68 263.8 231 61.9
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 2.7e-68 262.7 185 70.8
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 3.5e-68 262.3 225 63.6
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.0e-67 260.8 178 73.0
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 3.9e-67 258.8 225 61.8
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 3.9e-67 258.8 189 72.0
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 3.9e-67 258.8 181 74.6
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 1.5e-66 256.9 227 63.4
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 1.9e-66 256.5 199 73.4
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 1.3e-65 253.8 235 62.1
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 6.2e-65 251.5 233 59.7
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 8.1e-65 251.1 207 65.2
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.1e-64 250.8 166 78.9
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.1e-64 250.8 166 78.9
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 1.4e-64 250.4 215 65.1
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 1.2e-63 247.3 166 77.1
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 1.5e-63 246.9 227 58.1
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 1.5e-63 246.9 227 58.1
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 1.5e-63 246.9 227 58.1
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 1.5e-63 246.9 152 80.9
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 2.6e-63 246.1 207 63.8
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 3.4e-63 245.7 215 60.0
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 7.6e-63 244.6 222 61.3
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 9.9e-63 244.2 233 60.5
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.7e-62 243.4 164 76.8
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.7e-62 243.4 164 76.8
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.9e-62 242.7 164 76.2
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 2.9e-62 242.7 208 64.9
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 2.9e-62 242.7 208 64.9
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 1.4e-61 240.4 214 62.1
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 1.9e-61 240.0 227 59.5
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 1.9e-61 240.0 227 59.5
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 7.1e-61 238.0 195 65.6
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.7e-60 236.1 206 64.6
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 2.3e-59 233.0 157 75.8
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 3.9e-59 232.3 157 73.9
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 1.1e-58 230.7 202 63.4
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 1.5e-58 230.3 171 67.8
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 1.4e-56 223.8 157 71.3
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.8e-56 223.4 157 72.6
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 6.9e-56 221.5 184 60.9
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 1.2e-55 220.7 194 66.0
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 2.0e-55 219.9 157 73.2
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 3.4e-55 219.2 155 69.0
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 4.9e-54 215.3 155 68.4
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 1.4e-53 213.8 157 72.0
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 1.4e-53 213.8 157 70.7
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 2.4e-53 213.0 157 67.5
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 4.2e-53 212.2 174 63.2
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 4.2e-53 212.2 157 70.7
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 7.1e-53 211.5 137 79.6
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 4.6e-52 208.8 147 70.7
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 7.9e-52 208.0 184 59.8
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 7.9e-52 208.0 148 71.6
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 3.3e-50 202.6 172 61.6
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.6e-49 200.3 144 76.4
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.6e-49 200.3 125 82.4
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 8.2e-49 198.0 151 67.5
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 1.4e-48 197.2 181 56.4
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 5.3e-48 195.3 118 84.7
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 5.3e-48 195.3 177 62.7
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 5.3e-48 195.3 177 62.7
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 8.4e-46 188.0 190 53.7
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 9.3e-45 184.5 183 54.1
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 2.3e-43 179.9 208 49.0
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 4.8e-41 172.2 137 64.2
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.4e-40 170.6 105 83.8
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.1e-40 169.1 105 82.9
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 8.5e-38 161.4 180 52.8
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 1.9e-37 160.2 202 49.0
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 1.3e-35 154.1 192 49.0
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 3.0e-35 152.9 157 49.7
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 3.3e-34 149.4 108 72.2
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 7.4e-26 121.7 87 69.0
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 5.9e-23 112.1 157 45.9
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 2.3e-19 100.1 204 33.3
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.4e-10 69.3 84 52.4
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.5e-10 68.6 84 52.4
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.8e-09 65.9 68 54.4


User provided reference genes

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