Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 0.0e+00 1309.3 655 100.0
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 0.0e+00 1134.8 703 82.6
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 8.1e-304 1046.6 663 79.3
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 3.2e-300 1034.6 653 79.3
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 1.7e-293 1012.3 652 79.0
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 2.2e-293 1011.9 619 84.3
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 5.8e-286 987.3 671 74.7
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 2.5e-281 971.8 662 74.8
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 4.0e-279 964.5 654 74.3
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 1.9e-276 955.7 659 73.7
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 9.3e-276 953.4 656 73.0
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 7.9e-275 950.3 688 70.9
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 1.9e-273 945.7 656 73.3
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 8.2e-272 940.3 654 72.8
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 8.2e-272 940.3 654 72.8
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 1.8e-271 939.1 654 72.6
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 5.8e-270 934.1 656 73.3
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 5.0e-269 931.0 665 71.4
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 3.2e-268 928.3 659 71.8
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 2.1e-267 925.6 635 74.5
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 1.8e-263 912.5 653 70.0
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 1.9e-260 902.5 661 68.5
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 7.2e-260 900.6 663 68.3
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 5.7e-257 891.0 657 69.9
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 2.2e-256 889.0 655 69.3
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 2.4e-255 885.6 652 70.6
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 6.9e-255 884.0 657 68.8
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 1.7e-253 879.4 763 63.0
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 2.9e-253 878.6 740 63.4
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 1.9e-252 875.9 656 68.6
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 2.5e-252 875.5 614 73.0
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 1.2e-251 873.2 657 68.5
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 4.4e-249 864.8 663 71.3
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.7e-248 862.8 687 69.1
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.7e-248 862.8 687 69.1
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 2.8e-248 862.1 674 67.4
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 1.8e-247 859.4 540 79.3
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 2.9e-245 852.0 656 68.1
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 3.5e-238 828.6 655 63.5
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 4.2e-236 821.6 667 64.0
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 2.1e-235 819.3 670 62.2
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.0e-234 817.0 713 64.4
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 1.2e-233 813.5 655 65.6
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 1.6e-230 803.1 483 85.1
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 2.0e-230 802.7 690 61.2
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 2.0e-230 802.7 678 62.8
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 4.2e-228 795.0 664 64.2
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 5.5e-228 794.7 628 66.2
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 3.6e-227 792.0 679 62.7
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 1.7e-224 783.1 668 63.5
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 7.0e-215 751.1 550 69.5
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 1.0e-213 747.3 659 61.2
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.0e-209 733.0 525 71.4
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.1e-207 725.3 526 71.1
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 4.6e-206 721.8 570 64.6
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 4.6e-206 721.8 653 59.3
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 3.2e-199 699.1 696 57.2
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 7.8e-198 694.5 660 57.7
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.4e-194 683.7 464 79.1
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.4e-192 674.9 464 78.4
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 8.9e-186 654.4 508 67.9
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 1.5e-185 653.7 557 62.3
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 2.0e-185 653.3 496 68.8
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 1.6e-182 643.7 658 49.4
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 1.5e-177 627.1 416 76.2
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 4.2e-175 619.0 438 73.3
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 9.3e-175 617.8 465 69.9
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 1.4e-170 604.0 472 66.7
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.2e-169 600.9 477 66.2
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 6.4e-168 595.1 548 60.6
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 8.4e-168 594.7 508 60.8
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 2.1e-166 590.1 328 84.8
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 3.0e-165 586.3 421 71.5
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 5.1e-165 585.5 472 64.6
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 3.2e-159 566.2 468 63.7
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 3.3e-156 556.2 540 57.8
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 2.0e-140 503.8 286 81.5
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 8.5e-136 488.4 659 43.9
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 2.3e-133 480.3 659 41.9
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 4.4e-132 476.1 458 55.9
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 4.7e-126 456.1 651 40.9
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 1.0e-120 438.3 244 86.5
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 6.8e-101 372.5 258 71.7
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 4.3e-95 353.2 285 65.6
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 1.6e-81 308.1 173 86.7
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 3.3e-79 300.4 173 83.8
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 2.1e-78 297.7 173 82.1
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 2.0e-76 291.2 168 81.5
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 5.8e-76 289.7 292 56.8
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.9e-72 276.9 151 86.8
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 3.6e-70 270.4 346 44.2
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 1.4e-69 268.5 242 54.5
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 7.1e-66 256.1 174 72.4
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 6.6e-64 249.6 176 68.2
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 2.5e-63 247.7 173 67.1
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 7.3e-63 246.1 178 68.0
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 9.6e-63 245.7 607 32.1
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 2.8e-62 244.2 173 65.9
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 8.1e-62 242.7 173 64.7
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 1.8e-61 241.5 173 64.2
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 6.9e-61 239.6 173 67.1
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 5.4e-58 229.9 131 85.5
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 9.3e-58 229.2 175 62.9
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 6.7e-56 223.0 245 53.5
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 2.0e-52 211.5 173 63.0
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 4.5e-52 210.3 115 85.2
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 8.7e-48 196.1 102 89.2
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 7.4e-47 193.0 100 90.0
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 1.3e-46 192.2 133 71.4
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 1.3e-46 192.2 173 56.6
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 1.6e-46 191.8 133 71.4
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 2.1e-46 191.4 130 67.7
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 1.4e-45 188.7 870 24.3
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 1.3e-43 182.2 103 82.5
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 1.1e-42 179.1 130 68.5
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 8.2e-38 162.9 90 84.4
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 6.9e-37 159.8 114 75.4
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.9e-34 151.8 137 54.7
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 9.7e-31 139.4 198 46.5
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 6.3e-30 136.7 77 85.7
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 2.9e-27 127.9 198 33.8
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.1e-26 125.9 78 75.6
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 1.0e-24 119.4 70 80.0
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 6.7e-24 116.7 65 83.1
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 6.9e-21 106.7 69 69.6
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 3.9e-16 90.9 58 70.7
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 6.7e-16 90.1 56 75.0
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 9.1e-13 79.7 44 81.8
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 2.1e-09 68.6 51 54.9
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.7e-09 68.2 349 20.9
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 4.7e-09 67.4 41 73.2
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 8.0e-09 66.6 330 22.4
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.4e-08 65.9 349 20.9
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 3.0e-08 64.7 57 54.4
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 5.2e-08 63.9 88 44.3
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 2.0e-07 62.0 129 37.2
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 2.0e-07 62.0 370 21.9
TWI39G1032 Tripterygium wilfordii HOM05D002332 ORTHO05D002509 2.0e-07 62.0 197 24.9
MD06G1143900 Malus domestica HOM05D002332 ORTHO05D002509 3.3e-07 61.2 216 25.0
BraA09t41176Z Brassica rapa HOM05D004736 ORTHO05D006424 5.7e-07 60.5 232 25.0
GSVIVG01008513001 Vitis vinifera HOM05D002332 ORTHO05D002509 5.7e-07 60.5 271 22.5
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 9.7e-07 59.7 60 56.7
ECA233G2827 Erigeron canadensis HOM05D000836 ORTHO05D000709 9.7e-07 59.7 226 26.1
Medtr1g034785 Medicago truncatula HOM05D002332 ORTHO05D002509 9.7e-07 59.7 260 22.3
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 9.7e-07 59.7 88 42.0
RcHm_v2.0_Chr7g0190461 Rosa chinensis HOM05D002332 ORTHO05D002509 9.7e-07 59.7 196 26.5
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 1.3e-06 59.3 88 42.0
RcHm_v2.0_Chr4g0404071 Rosa chinensis HOM05D005766 ORTHO05D007002 1.3e-06 59.3 34 85.3
CSS0035081 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.7e-06 58.9 38 73.7
Glyma.18G275100 Glycine max HOM05D002332 ORTHO05D002509 1.7e-06 58.9 258 23.6
VMungo1383G1345 Vigna mungo HOM05D005813 ORTHO05D007310 1.7e-06 58.9 346 20.8
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 1.7e-06 58.9 223 24.7
FAN12G3290 Fragaria x ananassa HOM05D000002 ORTHO05D006339 2.8e-06 58.2 304 20.4
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 2.8e-06 58.2 226 22.1
Cfa022012 Carpinus fangiana HOM05D004669 ORTHO05D126033 3.7e-06 57.8 259 24.3
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 4.8e-06 57.4 295 22.4
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 4.8e-06 57.4 230 23.9
CSS0038194 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 6.3e-06 57.0 38 71.1
Glyma.05G071000 Glycine max HOM05D000836 ORTHO05D000709 6.3e-06 57.0 256 22.7
arahy.Tifrunner.gnm1.ann1.DS860L Arachis hypogaea HOM05D004669 ORTHO05D005767 8.2e-06 56.6 221 20.8
arahy.Tifrunner.gnm1.ann1.L4R828 Arachis hypogaea HOM05D004669 ORTHO05D005767 8.2e-06 56.6 221 20.8
Thecc.03G126600 Theobroma cacao HOM05D002332 ORTHO05D002509 8.2e-06 56.6 244 22.1


User provided reference genes

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