Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.6e-36 155.6 79 100.0
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.3e-35 152.5 79 97.5
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 5.1e-27 124.0 62 98.4
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 8.1e-25 116.7 62 91.9
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.5e-23 112.5 62 88.7
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.5e-23 112.5 62 88.7
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.6e-23 111.7 62 87.1
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 3.4e-23 111.3 62 88.7
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.4e-23 110.9 62 88.7
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.3e-22 109.4 62 87.1
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.7e-22 109.0 62 85.5
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 2.2e-22 108.6 62 83.9
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.2e-22 108.6 62 85.5
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 1.1e-21 106.3 62 79.0
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.4e-21 105.9 61 83.6
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 9.3e-21 103.2 67 74.6
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.2e-20 102.8 61 77.0
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.2e-20 102.8 62 80.6
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 2.7e-20 101.7 62 79.0
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 3.5e-20 101.3 66 74.2
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 3.5e-20 101.3 62 79.0
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 3.5e-20 101.3 62 77.4
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 7.8e-20 100.1 62 79.0
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.3e-19 99.4 67 70.1
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.7e-19 99.0 62 72.6
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 1.7e-19 99.0 58 77.6
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 2.3e-19 98.6 61 75.4
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 5.1e-19 97.4 62 74.2
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 6.6e-19 97.1 62 74.2
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.5e-18 95.9 61 72.1
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.5e-18 95.9 58 74.1
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 3.3e-18 94.7 61 73.8
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 3.3e-18 94.7 58 79.3
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 4.3e-18 94.4 62 71.0
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 4.3e-18 94.4 62 71.0
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 4.3e-18 94.4 58 72.4
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 4.3e-18 94.4 66 71.2
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 7.3e-18 93.6 62 71.0
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 9.6e-18 93.2 62 71.0
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.3e-17 92.8 58 74.1
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 1.6e-17 92.4 58 77.6
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.1e-17 92.0 58 74.1
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 2.8e-17 91.7 66 66.7
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 3.6e-17 91.3 62 66.1
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 3.6e-17 91.3 62 66.1
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 4.8e-17 90.9 66 69.7
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 4.8e-17 90.9 57 73.7
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 4.8e-17 90.9 61 72.1
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 6.2e-17 90.5 62 72.6
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 6.2e-17 90.5 62 72.6
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 6.2e-17 90.5 60 73.3
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 8.1e-17 90.1 62 71.0
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 8.1e-17 90.1 62 71.0
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 8.1e-17 90.1 58 75.9
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.4e-16 89.4 58 70.7
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 1.8e-16 89.0 61 67.2
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 4.0e-16 87.8 62 71.0
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 5.3e-16 87.4 66 62.1
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 5.3e-16 87.4 58 74.1
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 5.3e-16 87.4 66 65.2
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 9.0e-16 86.7 62 64.5
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.2e-15 86.3 61 65.6
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.2e-15 86.3 62 66.1
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 1.5e-15 85.9 62 66.1
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 2.6e-15 85.1 62 64.5
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 7.6e-15 83.6 66 60.6
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 9.9e-15 83.2 66 60.6
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.2e-14 82.0 61 65.6
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 3.8e-14 81.3 62 64.5
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 4.9e-14 80.9 56 71.4
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 4.9e-14 80.9 59 67.8
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 1.4e-13 79.3 62 62.9
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.4e-13 79.3 40 92.5
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 1.4e-13 79.3 40 92.5
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.4e-13 78.6 72 55.6
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 2.4e-13 78.6 64 65.6
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 2.4e-13 78.6 61 62.3
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 2.4e-13 78.6 61 63.9
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.2e-12 76.3 62 61.3
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.6e-12 75.9 62 64.5
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 6.0e-12 73.9 64 59.4
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 6.0e-12 73.9 62 54.8
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 7.9e-12 73.6 58 62.1
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 3.9e-11 71.2 58 55.2
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.5e-10 69.3 60 55.0
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.5e-10 68.6 43 72.1
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 5.6e-10 67.4 60 53.3
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 7.4e-10 67.0 58 55.2
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 1.6e-09 65.9 58 55.2
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 2.8e-09 65.1 60 51.7
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.8e-09 65.1 59 57.6
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 1.1e-08 63.2 60 50.0
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 1.1e-08 63.2 60 50.0
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 1.8e-08 62.4 56 51.8
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 2.4e-08 62.0 57 50.9
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 3.1e-08 61.6 37 75.7
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 6.9e-08 60.5 62 51.6
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 6.9e-08 60.5 61 54.1
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.5e-07 59.3 56 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 2.6e-07 58.5 71 40.8
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 5.8e-07 57.4 56 48.2
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 5.8e-07 57.4 56 48.2
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 2.2e-06 55.5 41 61.0


User provided reference genes

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