Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.9e-159 565.8 291 100.0
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 3.5e-134 481.9 294 84.0
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 2.4e-114 416.0 293 76.5
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 1.1e-108 397.1 296 74.0
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.1e-108 397.1 296 74.0
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.3e-108 395.2 296 73.6
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.3e-108 395.2 296 74.3
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 2.2e-107 392.9 296 73.3
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 3.4e-105 385.6 301 68.4
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 4.5e-105 385.2 328 67.4
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 3.8e-104 382.1 300 66.3
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 5.1e-101 371.7 294 66.3
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 8.2e-99 364.4 296 65.9
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 2.5e-95 352.8 292 63.0
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 2.5e-95 352.8 297 60.3
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 2.0e-92 343.2 299 62.9
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 1.3e-91 340.5 294 59.5
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 2.2e-91 339.7 305 57.7
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 6.3e-91 338.2 293 60.8
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 3.1e-90 335.9 307 57.0
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 3.1e-90 335.9 297 62.3
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 4.5e-89 332.0 298 58.4
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 2.9e-88 329.3 289 60.6
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 6.5e-88 328.2 293 60.4
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 1.1e-87 327.4 295 60.0
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 1.5e-87 327.0 301 56.5
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 7.2e-87 324.7 300 59.3
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 7.2e-87 324.7 293 56.7
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 1.2e-86 323.9 293 60.1
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 4.0e-85 318.9 293 57.3
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 8.8e-85 317.8 311 57.9
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.5e-84 317.0 298 56.0
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 2.0e-84 316.6 289 60.2
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 2.6e-84 316.2 290 59.7
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 7.5e-84 314.7 302 55.3
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 3.2e-79 299.3 293 53.9
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 4.7e-78 295.4 260 59.2
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.0e-77 294.3 297 52.5
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.0e-77 294.3 297 52.5
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 1.0e-77 294.3 294 53.4
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 2.3e-77 293.1 299 51.8
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 6.8e-77 291.6 301 53.2
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 8.8e-77 291.2 299 52.5
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.2e-76 290.8 336 50.3
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 9.8e-76 287.7 291 55.7
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 1.7e-75 287.0 289 54.0
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 2.8e-75 286.2 289 54.0
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 8.3e-75 284.6 293 51.5
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.4e-74 283.9 283 55.1
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 3.1e-74 282.7 289 53.6
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 5.4e-74 282.0 289 51.9
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 9.1e-74 281.2 265 57.7
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 1.2e-73 280.8 293 51.9
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 1.2e-73 280.8 282 52.5
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 3.5e-73 279.3 267 53.9
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 1.7e-72 276.9 287 53.7
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 5.0e-72 275.4 290 49.7
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 4.2e-71 272.3 264 56.8
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 5.5e-71 271.9 274 51.1
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 5.2e-69 265.4 297 49.2
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 5.2e-69 265.4 287 50.2
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 6.8e-69 265.0 288 50.0
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 2.2e-67 260.0 295 48.1
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 2.2e-67 260.0 287 49.1
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 5.9e-65 251.9 168 76.8
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 1.0e-64 251.1 269 51.3
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 1.2e-62 244.2 213 60.1
RcHm_v2.0_Chr1g0379501 Rosa chinensis HOM05D006306 ORTHO05D007912 2.8e-62 243.0 213 63.8
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 1.8e-61 240.4 295 47.5
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 3.1e-61 239.6 288 44.8
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 4.0e-61 239.2 295 46.8
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 2.0e-60 236.9 209 60.8
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 4.4e-60 235.7 257 49.8
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 4.4e-60 235.7 204 61.8
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 7.5e-60 235.0 298 46.0
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 2.0e-57 226.9 279 44.8
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 3.5e-57 226.1 268 47.0
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 3.9e-56 222.6 253 49.0
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 8.6e-56 221.5 285 46.0
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 5.6e-55 218.8 253 48.2
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 4.7e-54 215.7 287 40.8
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 6.2e-54 215.3 334 41.6
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 3.1e-53 213.0 281 44.1
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 4.0e-53 212.6 281 44.1
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 8.3e-51 204.9 277 43.0
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 1.9e-50 203.8 229 53.7
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 3.2e-50 203.0 198 55.6
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 4.6e-49 199.1 216 54.2
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 6.0e-49 198.7 287 41.5
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 9.5e-47 191.4 211 47.9
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.1e-45 188.0 265 43.4
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 2.9e-43 179.9 193 51.8
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 3.7e-43 179.5 200 48.5
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 4.9e-43 179.1 244 41.8
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 2.3e-40 170.2 232 46.1
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 4.7e-38 162.5 194 45.4
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.4e-37 161.0 301 34.2
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 4.4e-36 156.0 254 38.6
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 1.3e-35 154.5 221 42.5
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 1.9e-34 150.6 237 39.7
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 1.9e-34 150.6 205 43.9
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 5.4e-34 149.1 194 43.8
CARHR265820 Cardamine hirsuta HOM05D006306 ORTHO05D007912 6.0e-33 145.6 236 38.1
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.3e-32 144.4 220 38.2
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 1.3e-30 137.9 92 75.0
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 4.8e-30 136.0 137 52.6
Aa31LG3G9120 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.1e-29 134.8 194 40.7
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 1.5e-28 131.0 341 29.6
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 4.4e-28 129.4 252 31.0
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 6.4e-27 125.6 112 58.0
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 1.9e-26 124.0 62 98.4
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 5.4e-26 122.5 62 96.8
CAN.G926.5 Capsicum annuum HOM05D006306 ORTHO05D007912 2.1e-25 120.6 140 45.0
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 7.8e-25 118.6 108 59.3
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 3.0e-24 116.7 79 78.5
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 1.5e-23 114.4 112 54.5
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 7.3e-23 112.1 80 71.2
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 7.3e-23 112.1 80 71.2
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 2.1e-22 110.5 124 51.6
Pp3c3_15840 Physcomitrium patens HOM05D006306 ORTHO05D007912 3.1e-21 106.7 273 28.9
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 2.6e-20 103.6 62 80.6
C09p42540 Brassica napus HOM05D006306 ORTHO05D007912 3.2e-18 96.7 138 42.0
CSS0035371 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 7.1e-18 95.5 141 37.6
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 9.3e-18 95.1 61 72.1
Glyma.20G163801 Glycine max HOM05D006306 ORTHO05D007912 3.3e-15 86.7 123 39.0
RcHm_v2.0_Chr1g0379101 Rosa chinensis HOM05D006306 ORTHO05D007912 2.8e-14 83.6 49 75.5
SMO325G0002 Selaginella moellendorffii HOM05D006584 ORTHO05D007640 3.1e-13 80.1 190 28.9


User provided reference genes

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