Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 6.8e-93 344.0 171 100.0
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 6.5e-88 327.4 171 93.0
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 8.5e-88 327.0 171 93.6
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 7.2e-87 323.9 169 94.1
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 3.6e-86 321.6 169 92.3
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 6.1e-86 320.9 169 92.3
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.1e-86 320.9 169 92.3
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 6.1e-86 320.9 169 92.3
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.0e-86 320.5 169 91.7
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 8.0e-86 320.5 169 91.7
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.4e-85 319.7 169 92.3
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.3e-85 318.9 169 91.7
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 1.6e-81 306.2 171 88.9
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 4.2e-79 298.1 169 87.6
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 1.0e-77 293.5 172 83.7
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 1.4e-77 293.1 171 84.2
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 1.4e-77 293.1 171 84.2
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.4e-77 293.1 171 84.8
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.8e-77 292.7 171 84.8
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 4.0e-77 291.6 171 84.2
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 4.0e-77 291.6 171 83.6
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 4.0e-77 291.6 171 83.6
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 5.2e-77 291.2 171 84.2
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 8.9e-77 290.4 169 85.2
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 8.9e-77 290.4 153 90.2
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 1.2e-76 290.0 171 83.0
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 1.2e-76 290.0 155 89.7
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-76 290.0 171 84.8
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 1.2e-76 290.0 171 84.8
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 2.0e-76 289.3 171 83.0
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 2.0e-76 289.3 171 83.0
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 4.4e-76 288.1 171 82.5
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 4.4e-76 288.1 155 89.0
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 4.4e-76 288.1 154 90.3
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 5.7e-76 287.7 163 86.5
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 5.7e-76 287.7 171 82.5
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 7.5e-76 287.3 164 85.4
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 7.5e-76 287.3 171 81.9
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 9.8e-76 287.0 163 84.0
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 9.8e-76 287.0 155 89.0
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 9.8e-76 287.0 171 83.6
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 9.8e-76 287.0 164 86.0
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 1.3e-75 286.6 171 83.0
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.7e-75 286.2 171 81.9
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 3.7e-75 285.0 163 84.0
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 3.7e-75 285.0 149 90.6
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 3.7e-75 285.0 163 84.0
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 4.9e-75 284.6 171 82.5
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 4.9e-75 284.6 171 83.6
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 6.3e-75 284.3 173 83.8
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 8.3e-75 283.9 149 89.9
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 8.3e-75 283.9 155 85.8
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 8.3e-75 283.9 155 85.8
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 1.1e-74 283.5 163 83.4
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 1.4e-74 283.1 171 84.2
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 2.4e-74 282.3 149 90.6
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.2e-74 282.0 171 81.3
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 5.4e-74 281.2 152 87.5
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.2e-73 280.0 171 80.1
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 2.0e-73 279.3 171 80.7
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 2.0e-73 279.3 170 80.0
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 2.7e-73 278.9 178 78.1
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.7e-73 278.9 171 80.7
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 3.5e-73 278.5 151 87.4
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 5.9e-73 277.7 152 86.2
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 5.9e-73 277.7 151 86.8
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 7.8e-73 277.3 178 77.5
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.8e-73 277.3 171 80.1
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 7.8e-73 277.3 171 80.1
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 7.8e-73 277.3 151 87.4
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 2.9e-72 275.4 153 87.6
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 2.9e-72 275.4 171 79.5
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 6.6e-72 274.2 176 78.4
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 1.1e-71 273.5 153 85.0
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.1e-71 273.5 151 85.4
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 1.5e-71 273.1 172 79.7
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.5e-71 272.3 173 77.5
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 4.3e-71 271.6 177 77.4
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 4.3e-71 271.6 157 83.4
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 5.6e-71 271.2 157 84.1
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.6e-71 271.2 171 78.4
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 7.3e-71 270.8 151 84.8
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 7.3e-71 270.8 176 76.1
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 9.5e-71 270.4 171 78.4
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 1.2e-70 270.0 169 79.9
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.6e-70 269.6 164 79.3
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 1.6e-70 269.6 148 87.8
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 1.6e-70 269.6 160 81.9
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 2.8e-70 268.9 163 81.0
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 3.6e-70 268.5 174 76.4
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 3.6e-70 268.5 153 86.3
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 4.7e-70 268.1 169 79.9
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 4.7e-70 268.1 153 86.3
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 4.7e-70 268.1 169 80.5
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 4.7e-70 268.1 169 78.7
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 6.1e-70 267.7 171 77.8
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 6.1e-70 267.7 163 81.6
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 6.1e-70 267.7 171 76.0
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 6.1e-70 267.7 169 78.7
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 8.0e-70 267.3 169 79.9
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 8.0e-70 267.3 170 78.2
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 8.0e-70 267.3 168 79.2
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 1.4e-69 266.5 171 77.8
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 1.4e-69 266.5 171 77.8
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.8e-69 266.2 169 81.1
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.1e-69 265.4 163 79.8
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 3.1e-69 265.4 153 84.3
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 6.8e-69 264.2 172 76.2
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 1.2e-68 263.5 153 81.7
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 1.5e-68 263.1 168 75.0
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 2.0e-68 262.7 174 77.6
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.6e-68 262.3 174 77.0
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 5.8e-68 261.2 165 75.8
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 5.8e-68 261.2 174 77.0
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 9.8e-68 260.4 174 77.0
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.9e-67 258.8 153 83.0
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 6.4e-67 257.7 154 81.2
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 6.4e-67 257.7 154 81.2
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 8.3e-67 257.3 161 75.8
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.4e-66 256.5 170 74.1
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.4e-66 255.8 170 74.7
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 3.2e-66 255.4 175 74.3
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 5.4e-66 254.6 157 78.3
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 7.0e-66 254.2 161 74.5
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 9.2e-66 253.8 175 73.7
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 1.2e-65 253.4 161 73.9
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 1.2e-65 253.4 175 73.7
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 2.0e-65 252.7 172 75.0
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 6.0e-65 251.1 158 75.9
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 6.0e-65 251.1 163 74.8
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.7e-64 249.6 158 74.7
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 8.6e-64 247.3 152 78.3
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 8.6e-64 247.3 219 60.3
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 1.6e-62 243.0 156 73.7
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 4.0e-61 238.4 157 71.3
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 2.9e-59 232.3 144 79.2
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 8.3e-59 230.7 167 68.9
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 1.9e-58 229.6 146 72.6
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 1.2e-57 226.9 151 73.5
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 3.5e-57 225.3 130 83.1
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 7.8e-57 224.2 163 69.3
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 8.6e-56 220.7 128 83.6
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 6.8e-53 211.1 130 80.0
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 2.6e-52 209.1 160 61.2
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 4.9e-51 204.9 112 86.6
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.3e-43 180.3 154 61.7
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.7e-43 179.9 134 64.2
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 3.2e-42 175.6 133 60.2
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 9.3e-42 174.1 134 61.2
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 1.2e-41 173.7 166 56.0
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 7.8e-41 171.0 134 60.4
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 6.6e-40 167.9 108 80.6
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 4.3e-39 165.2 171 57.9
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 4.4e-36 155.2 86 91.9
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 1.7e-35 153.3 88 87.5
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 4.6e-33 145.2 112 68.8
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 9.6e-31 137.5 120 53.3
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 3.4e-28 129.0 105 66.7
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.9e-27 125.9 98 66.3
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 1.9e-26 123.2 99 59.6
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 5.4e-26 121.7 176 40.3
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 1.2e-25 120.6 131 43.5
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.9e-23 113.2 171 43.3
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.5e-23 112.8 136 42.6
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 2.5e-23 112.8 136 42.6
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 4.3e-23 112.1 71 76.1
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 1.4e-21 107.1 56 82.1
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 7.6e-20 101.3 69 68.1
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.8e-19 99.0 66 72.7
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 6.0e-17 91.7 67 62.7
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 1.1e-15 87.4 100 42.0
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 1.1e-15 87.4 100 42.0
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 1.6e-14 83.6 95 40.0
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 8.2e-14 81.3 55 70.9
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 3.4e-12 75.9 58 53.4
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 2.2e-11 73.2 95 44.2


User provided reference genes

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