Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G301900 Prunus persica HOM05D002465 ORTHO05D005308 0.0e+00 1173.3 588 100.0
MD01G1209800 Malus domestica HOM05D002465 ORTHO05D005308 4.1e-291 1004.2 590 85.4
RcHm_v2.0_Chr1g0378531 Rosa chinensis HOM05D002465 ORTHO05D005308 1.0e-265 919.8 590 79.7
FAN06G3650 Fragaria x ananassa HOM05D002465 ORTHO05D005308 5.3e-262 907.5 590 78.5
FAN06G0430 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.5e-261 906.0 590 78.3
FvH4_7g30390 Fragaria vesca HOM05D002465 ORTHO05D005308 8.4e-260 900.2 567 80.1
FAN10G1194 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-259 899.8 590 78.5
FAN10G1435 Fragaria x ananassa HOM05D002465 ORTHO05D005308 6.9e-254 880.6 579 78.1
FAN03G3136 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.4e-253 878.2 594 76.4
QL09p012529 Quercus lobata HOM05D002465 ORTHO05D005308 1.7e-244 849.4 617 71.6
FAN01G1269 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.3e-231 806.6 604 71.0
Haze_00055 Corylus avellana HOM05D002465 ORTHO05D005308 3.1e-230 802.0 628 66.9
Manes.06G153300 Manihot esculenta HOM05D002465 ORTHO05D005308 1.1e-224 783.5 615 67.5
Dinv35264 Davidia involucrata HOM05D002465 ORTHO05D005308 6.3e-223 777.7 613 66.2
GSVIVG01028829001 Vitis vinifera HOM05D002465 ORTHO05D005308 1.4e-222 776.5 617 66.3
TWI23G1289 Tripterygium wilfordii HOM05D002465 ORTHO05D005308 3.1e-222 775.4 601 66.7
Thecc.03G185500 Theobroma cacao HOM05D002465 ORTHO05D005308 9.1e-222 773.9 617 64.8
Actinidia34161 Actinidia chinensis HOM05D002465 ORTHO05D005308 2.0e-221 772.7 612 65.4
Cfa016295 Carpinus fangiana HOM05D002465 ORTHO05D005308 4.5e-221 771.5 599 67.4
Potri.017G148000 Populus trichocarpa HOM05D002465 ORTHO05D005308 1.4e-219 766.5 610 65.9
Gorai.008G274000 Gossypium raimondii HOM05D002465 ORTHO05D005308 8.8e-217 757.3 609 64.9
Sabra17G0123700 Salix brachista HOM05D002465 ORTHO05D005308 3.1e-214 748.8 626 64.1
Ciclev10006841m.g Citrus clementina HOM05D002465 ORTHO05D005308 2.2e-212 742.7 616 65.1
Sabra17G0123300 Salix brachista HOM05D002465 ORTHO05D005308 2.9e-212 742.3 627 63.2
Cpa.g.sc107.121 Carica papaya HOM05D002465 ORTHO05D005308 1.9e-211 739.6 617 64.0
Sc13g0009230 Simmondsia chinensis HOM05D002465 ORTHO05D005308 3.2e-211 738.8 594 64.8
Gohir.D12G255900 Gossypium hirsutum HOM05D002465 ORTHO05D005308 2.3e-209 732.6 590 64.9
Migut.F00281 Erythranthe guttata HOM05D002465 ORTHO05D005308 2.6e-208 729.2 592 63.3
COL.COLO4_30301 Corchorus olitorius HOM05D002465 ORTHO05D005308 3.3e-208 728.8 589 65.2
EL10Ac3g05400 Beta vulgaris HOM05D002465 ORTHO05D005308 2.2e-207 726.1 594 61.4
Nitab4.5_0007593g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 2.2e-207 726.1 597 63.7
CAN.G290.13 Capsicum annuum HOM05D002465 ORTHO05D005308 1.1e-206 723.8 600 61.2
Lalb_Chr19g0130571 Lupinus albus HOM05D002465 ORTHO05D005308 4.1e-206 721.8 610 62.3
Glyma.09G129600 Glycine max HOM05D002465 ORTHO05D005308 7.0e-206 721.1 612 61.8
Eucgr.A02722 Eucalyptus grandis HOM05D002465 ORTHO05D005308 1.6e-205 719.9 598 64.5
Medtr6g052330 Medicago truncatula HOM05D002465 ORTHO05D005308 2.7e-205 719.2 610 62.1
Lj2g0016146 Lotus japonicus HOM05D002465 ORTHO05D005308 3.5e-205 718.8 618 62.5
TPR.G9187 Trifolium pratense HOM05D002465 ORTHO05D005308 8.5e-204 714.1 619 62.4
PSO170G2577 Papaver somniferum HOM05D002465 ORTHO05D005308 1.5e-203 713.4 607 61.6
Sopen12g022610 Solanum pennellii HOM05D002465 ORTHO05D005308 1.5e-203 713.4 597 61.6
PGR042G3288 Punica granatum HOM05D002465 ORTHO05D005308 3.2e-203 712.2 594 62.8
TAR374G1583 Trochodendron aralioides HOM05D002465 ORTHO05D005308 9.4e-203 710.7 540 68.3
Duzib205G0901 Durio zibethinus HOM05D002465 ORTHO05D005308 1.0e-201 707.2 608 62.5
Nitab4.5_0008234g0010 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.0e-201 707.2 602 61.8
CiPaw.05G261600 Carya illinoinensis HOM05D002465 ORTHO05D005308 1.8e-201 706.4 497 72.6
CsaV3_3G017530 Cucumis sativus L. HOM05D002465 ORTHO05D005308 3.0e-201 705.7 599 61.3
ClCG05G008450 Citrullus lanatus HOM05D002465 ORTHO05D005308 4.0e-201 705.3 598 61.5
Cc02_g02290 Coffea canephora HOM05D002465 ORTHO05D005308 5.2e-201 704.9 610 60.2
DCAR_008895 Daucus carota HOM05D002465 ORTHO05D005308 1.2e-200 703.7 636 58.6
Aqoxy5G04085 Aquilegia oxysepala HOM05D002465 ORTHO05D005308 1.7e-199 699.9 615 59.7
Oeu036031.1 Olea europaea HOM05D002465 ORTHO05D005308 2.2e-199 699.5 595 62.0
Sed0022656 Sechium edule HOM05D002465 ORTHO05D005308 1.1e-198 697.2 601 62.2
Lj1C1006G4 Lonicera japonica HOM05D002465 ORTHO05D005308 2.4e-198 696.0 544 66.0
HanXRQChr15g0494161 Helianthus annuus HOM05D002465 ORTHO05D005308 9.1e-198 694.1 594 62.1
AUR62021107 Chenopodium quinoa HOM05D002465 ORTHO05D005308 2.9e-196 689.1 593 60.4
THA.LOC104811947 Tarenaya hassleriana HOM05D002465 ORTHO05D005308 2.9e-196 689.1 581 61.8
ECA232G4104 Erigeron canadensis HOM05D002465 ORTHO05D005308 3.8e-196 688.7 592 61.7
Thhalv10012991m.g Eutrema salsugineum HOM05D002465 ORTHO05D005308 7.2e-195 684.5 597 61.5
SGA_v2.0_scaffold60G21117 Striga asiatica HOM05D002465 ORTHO05D005308 1.2e-194 683.7 634 56.6
Hund04793 Selenicereus undatus HOM05D002465 ORTHO05D005308 2.1e-194 682.9 587 59.6
SalBow4G2218 Salvia bowleyana HOM05D002465 ORTHO05D005308 6.1e-194 681.4 574 61.3
Nn1g01670 Nelumbo nucifera HOM05D002465 ORTHO05D005308 1.0e-193 680.6 510 68.2
Gohir.A12G253600 Gossypium hirsutum HOM05D002465 ORTHO05D005308 5.7e-192 674.9 610 59.0
Carub.0008s1296 Capsella rubella HOM05D002465 ORTHO05D005308 2.2e-191 672.9 605 59.2
AUR62031432 Chenopodium quinoa HOM05D002465 ORTHO05D005308 4.9e-191 671.8 593 59.7
A02p11610 Brassica napus HOM05D002465 ORTHO05D005308 3.1e-190 669.1 594 59.9
BraA02t06223Z Brassica rapa HOM05D002465 ORTHO05D005308 5.4e-190 668.3 594 59.9
BcaB05g21981 Brassica carinata HOM05D002465 ORTHO05D005308 9.2e-190 667.5 593 60.0
BcaC03g14499 Brassica carinata HOM05D002465 ORTHO05D005308 9.2e-190 667.5 594 60.1
C02p19370 Brassica napus HOM05D002465 ORTHO05D005308 1.0e-188 664.1 593 60.0
Lsat_1_v5_gn_9_56800 Lactuca sativa HOM05D002465 ORTHO05D005308 1.1e-187 660.6 587 59.6
Psat0s1684g0080 Pisum sativum HOM05D002465 ORTHO05D005308 1.4e-185 653.7 578 61.6
BolC2t08072H Brassica oleracea HOM05D002465 ORTHO05D005308 2.3e-185 652.9 567 61.4
vmacro06621 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 4.0e-185 652.1 480 71.0
AL8G27230 Arabidopsis lyrata HOM05D002465 ORTHO05D005308 5.2e-185 651.7 601 59.1
Rhsim03G0191700 Rhododendron simsii HOM05D002465 ORTHO05D005308 1.5e-184 650.2 586 58.2
Aa31LG3G9040 Aethionema arabicum HOM05D002465 ORTHO05D005308 9.8e-184 647.5 658 54.0
Sp6g14950 Schrenkiella parvula HOM05D002465 ORTHO05D005308 9.2e-182 641.0 590 59.3
AT5G52800 Arabidopsis thaliana HOM05D002465 ORTHO05D005308 1.2e-181 640.6 601 58.1
Ah.07g206490 Amaranthus hybridus HOM05D002465 ORTHO05D005308 8.6e-180 634.4 589 57.6
Hma1.2p1_0274F.1_g110040 Hydrangea macrophylla HOM05D002465 ORTHO05D005308 1.4e-177 627.1 558 60.4
Phvul.004G106200 Phaseolus vulgaris HOM05D002465 ORTHO05D005308 6.4e-175 618.2 507 64.1
MBI04_g26956_MAGBIO Magnolia biondii HOM05D002465 ORTHO05D005308 3.2e-174 615.9 518 63.3
Os07g0467900 Oryza sativa ssp. japonica HOM05D002465 ORTHO05D005308 6.0e-173 611.7 603 55.6
MELO3C006956.2 Cucumis melo HOM05D002465 ORTHO05D005308 5.1e-172 608.6 598 56.4
unitig_52.g17726 Utricularia gibba HOM05D002465 ORTHO05D005308 1.2e-170 604.0 565 56.6
arahy.Tifrunner.gnm1.ann1.77GMEU Arachis hypogaea HOM05D002465 ORTHO05D005308 2.4e-166 589.7 607 56.0
Atru.BG.183.p Acer truncatum HOM05D002465 ORTHO05D005308 4.7e-162 575.5 495 62.0
DCAR_029292 Daucus carota HOM05D002465 ORTHO05D005308 1.9e-158 563.5 461 58.6
SHI09096 Sapria himalayana HOM05D002465 ORTHO05D005308 1.9e-158 563.5 478 61.7
DCAR_018565 Daucus carota HOM05D002465 ORTHO05D005308 1.3e-156 557.4 470 57.7
arahy.Tifrunner.gnm1.ann1.TJ5MNL Arachis hypogaea HOM05D002465 ORTHO05D005308 1.6e-154 550.4 451 63.9
ATR0661G279 Amborella trichopoda HOM05D002465 ORTHO05D005308 4.0e-153 545.8 572 53.1
Peaxi162Scf00023g00823 Petunia axillaris HOM05D002465 ORTHO05D005308 9.0e-153 544.7 431 64.3
HPP92_015081 Vanilla planifolia HOM05D002465 ORTHO05D005308 2.6e-152 543.1 505 56.8
RcHm_v2.0_Chr3g0497461 Rosa chinensis HOM05D002465 ORTHO05D005308 1.0e-148 531.2 375 73.3
Medtr6g052340 Medicago truncatula HOM05D002465 ORTHO05D005308 6.2e-146 521.9 387 64.6
CSS0029570 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.6e-138 497.3 350 70.0
Ca_26606_v3 Cicer arietinum L. HOM05D002465 ORTHO05D005308 3.9e-132 476.1 587 49.4
Mapoly0051s0060 Marchantia polymorpha HOM05D002465 ORTHO05D005308 4.2e-126 456.1 629 42.0
Pp3c1_12340 Physcomitrium patens HOM05D002465 ORTHO05D005308 1.1e-123 448.0 639 41.8
AagrBONN_evm.TU.Sc2ySwM_228.3313 Anthoceros agrestis HOM05D002465 ORTHO05D005308 1.4e-121 441.0 640 40.9
MSTRG.8702 Avicennia marina HOM05D002465 ORTHO05D005308 9.0e-121 438.3 337 66.8
Sabra17G0121400 Salix brachista HOM05D002465 ORTHO05D005308 2.2e-114 417.2 486 52.1
CANSAT21G2443 Cannabis sativa HOM05D002465 ORTHO05D005308 1.1e-105 388.3 321 64.8
CBR_g36403 Chara braunii HOM05D002465 ORTHO05D005308 1.1e-105 388.3 478 44.1
SMO103G0001 Selaginella moellendorffii HOM05D002465 ORTHO05D005308 9.1e-97 358.6 403 46.7
VMungo0464G1215 Vigna mungo HOM05D002465 ORTHO05D005308 2.0e-96 357.5 291 62.5
FAN05G2518 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-73 282.0 164 81.7
FAN09G4610 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-73 282.0 162 82.7
FAN10G2552 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-73 282.0 162 82.7
FAN25G3664 Fragaria x ananassa HOM05D002465 ORTHO05D005308 1.1e-73 282.0 164 81.7
MSTRG.8701 Avicennia marina HOM05D002465 ORTHO05D005308 4.6e-72 276.6 240 58.3
DCAR_005086 Daucus carota HOM05D002465 ORTHO05D005308 5.0e-71 273.1 329 44.4
SEGI_25618 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 9.8e-67 258.8 216 57.9
MD01G1209700 Malus domestica HOM05D002465 ORTHO05D005308 7.8e-64 249.2 255 59.2
MCO12G313 Micromonas commoda HOM05D002465 ORTHO05D005308 6.6e-63 246.1 399 37.1
DCAR_030059 Daucus carota HOM05D002465 ORTHO05D005308 4.3e-62 243.4 177 63.3
DCAR_029376 Daucus carota HOM05D002465 ORTHO05D005308 3.7e-58 230.3 154 64.9
CSS0047166 Camellia sinensis var. sinensis HOM05D002465 ORTHO05D005308 1.1e-57 228.8 223 54.3
Zm00001eb320240 Zea mays HOM05D002465 ORTHO05D005308 1.1e-54 218.8 229 51.1
Oeu058603.1 Olea europaea HOM05D002465 ORTHO05D005308 8.4e-50 202.6 188 58.0
HPP92_028543 Vanilla planifolia HOM05D002465 ORTHO05D005308 2.6e-43 181.0 164 51.8
Actinidia08586 Actinidia chinensis HOM05D002465 ORTHO05D008860 7.1e-41 172.9 229 45.4
FAN03G1432 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-40 170.6 164 56.7
FAN09G0727 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-40 170.6 164 56.7
FAN16G1547 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-40 170.6 164 56.7
FAN22G1212 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-40 170.6 164 56.7
FAN25G1827 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-40 170.6 164 56.7
FAN25G2717 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-40 170.6 164 56.7
FAN28G0992 Fragaria x ananassa HOM05D002465 ORTHO05D005308 3.5e-40 170.6 164 56.7
FAN09G3189 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.6e-40 170.2 162 57.4
FAN14G0324 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.6e-40 170.2 162 57.4
FAN21G0521 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.6e-40 170.2 162 57.4
FAN27G0148 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.6e-40 170.2 162 57.4
FAN27G0541 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.6e-40 170.2 162 57.4
FAN27G0848 Fragaria x ananassa HOM05D002465 ORTHO05D005308 4.6e-40 170.2 162 57.4
RcHm_v2.0_Chr1g0361031 Rosa chinensis HOM05D002465 ORTHO05D005308 4.6e-40 170.2 89 88.8
Actinidia08585 Actinidia chinensis HOM05D002465 ORTHO05D005308 5.1e-39 166.8 97 75.3
PRCOL_00005773 Prasinoderma coloniale HOM05D002465 ORTHO05D005308 4.3e-38 163.7 452 29.6
DCAR_030105 Daucus carota HOM05D002465 ORTHO05D005308 1.6e-37 161.8 220 39.5
Cre17.g705150 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D005308 2.4e-33 147.9 363 30.0
Psat0s1616g0040 Pisum sativum HOM05D002465 ORTHO05D005308 7.4e-30 136.3 131 64.9
SEGI_28877 Sequoiadendron giganteum HOM05D002465 ORTHO05D005308 1.4e-28 132.1 125 50.4
vmacro06620 Vaccinium macrocarpon HOM05D002465 ORTHO05D005308 1.5e-27 128.6 138 46.4
Rhsim10G0052100 Rhododendron simsii HOM05D002465 ORTHO05D036401 1.0e-23 115.9 113 60.2
Sabra17G0121500 Salix brachista HOM05D002465 ORTHO05D005308 1.3e-23 115.5 131 51.9
CBR_g81559 Chara braunii HOM05D002465 ORTHO05D005308 2.5e-22 111.3 172 36.6
FAN23G0684 Fragaria x ananassa HOM05D002465 ORTHO05D000592 2.1e-21 108.2 162 42.0
PSO063G0346 Papaver somniferum HOM05D002465 ORTHO05D005308 2.5e-17 94.7 111 45.0
Sabra18G0007300 Salix brachista HOM05D002718 ORTHO05D003269 3.2e-17 94.4 106 62.3
Nitab4.5_0007593g0030 Nicotiana tabacum HOM05D002465 ORTHO05D005308 1.2e-16 92.4 45 91.1
CBR_g19350 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-16 90.1 162 34.0
FAN01G2746 Fragaria x ananassa HOM05D000539 ORTHO05D000592 4.5e-11 73.9 60 60.0
Cre12.g553253 Chlamydomonas reinhardtii HOM05D002465 ORTHO05D145954 8.4e-10 69.7 87 37.9
CBR_g47978 Chara braunii HOM05D002465 ORTHO05D005308 3.5e-08 64.3 102 33.3
Solyc12g044350.1 Solanum lycopersicum HOM05D002465 ORTHO05D005308 1.0e-07 62.8 43 65.1
Psat2g076120 Pisum sativum HOM05D024525 ORTHO05D005308 8.7e-07 59.7 45 60.0
RcHm_v2.0_Chr2g0085031 Rosa chinensis HOM05D002465 ORTHO05D005308 8.7e-07 59.7 32 87.5
Peaxi162Scf00023g00818 Petunia axillaris HOM05D002465 ORTHO05D005308 1.5e-06 58.9 63 47.6
Psat7g022520 Pisum sativum HOM05D024525 ORTHO05D005308 3.3e-06 57.8 51 54.9


User provided reference genes

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