Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G301400 Prunus persica HOM05D010729 ORTHO05D011897 0.0e+00 1206.0 595 100.0
MD01G1208800 Malus domestica HOM05D010729 ORTHO05D011897 6.5e-127 458.8 795 41.9
RcHm_v2.0_Chr1g0378421 Rosa chinensis HOM05D010729 ORTHO05D011897 2.7e-80 303.9 740 34.7
FAN01G1663 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.8e-52 211.5 744 29.8
FAN10G1814 Fragaria x ananassa HOM05D010729 ORTHO05D011897 6.9e-52 209.5 718 30.8
FvH4_7g30290 Fragaria vesca HOM05D010729 ORTHO05D011897 1.9e-49 201.4 737 29.7
FAN06G3679 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.2e-48 198.7 737 29.4
QL09p012690 Quercus lobata HOM05D003611 ORTHO05D004281 4.6e-48 196.8 689 30.9
FAN03G1023 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.9e-41 174.9 659 29.7
Cfa016292 Carpinus fangiana HOM05D003611 ORTHO05D004281 2.7e-40 171.0 823 28.1
FAN03G3518 Fragaria x ananassa HOM05D010729 ORTHO05D011897 3.0e-39 167.5 742 28.3
Atru.chr1.351 Acer truncatum HOM05D003611 ORTHO05D004281 1.8e-36 158.3 637 30.5
FAN10G3254 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.9e-33 148.3 622 28.0
Duzib205G1157 Durio zibethinus HOM05D003611 ORTHO05D011897 5.2e-31 140.2 740 27.7
FAN06G0857 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.1e-28 132.5 615 27.5
Gohir.A11G012500 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.1e-25 122.5 248 37.9
Thecc.03G184800 Theobroma cacao HOM05D003611 ORTHO05D011897 4.2e-25 120.6 727 26.7
Cfa003881 Carpinus fangiana HOM05D003611 ORTHO05D004281 1.2e-24 119.0 275 35.3
Haze_00050 Corylus avellana HOM05D003611 ORTHO05D004281 1.8e-23 115.2 350 32.6
FAN03G3377 Fragaria x ananassa HOM05D010729 ORTHO05D011897 4.0e-23 114.0 660 27.9
Dinv43856 Davidia involucrata HOM05D003611 ORTHO05D004281 1.2e-22 112.5 363 32.2
Gohir.D11G011700 Gossypium hirsutum HOM05D003611 ORTHO05D011897 1.5e-22 112.1 259 36.3
TAR375G0370 Trochodendron aralioides HOM05D003611 ORTHO05D004281 5.7e-22 110.2 379 30.3
FAN03G0819 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.3e-21 109.0 667 27.9
FAN01G0074 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.7e-21 108.6 281 35.2
Haze_15553 Corylus avellana HOM05D003611 ORTHO05D004281 4.8e-21 107.1 291 32.3
Ciclev10006595m.g Citrus clementina HOM05D003611 ORTHO05D004281 6.3e-21 106.7 686 27.3
Gorai.007G013100 Gossypium raimondii HOM05D003611 ORTHO05D011897 8.2e-21 106.3 223 36.8
TWI23G0357 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.1e-20 105.9 190 42.1
Dinv32512 Davidia involucrata HOM05D003611 ORTHO05D004281 1.8e-20 105.1 332 32.2
PGR042G1491 Punica granatum HOM05D003611 ORTHO05D004281 7.0e-20 103.2 319 29.2
CSS0009973 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 4.5e-19 100.5 297 32.3
CSS0038908 Camellia sinensis var. sinensis HOM05D003611 ORTHO05D004281 4.5e-19 100.5 236 33.1
Manes.05G030300 Manihot esculenta HOM05D003611 ORTHO05D004281 2.2e-18 98.2 333 30.9
Actinidia10062 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.9e-18 97.8 272 31.2
CiPaw.02G033900 Carya illinoinensis HOM05D003611 ORTHO05D004281 3.8e-18 97.4 313 30.4
Actinidia20152 Actinidia chinensis HOM05D003611 ORTHO05D004281 6.5e-18 96.7 267 31.5
GSVIVG01026955001 Vitis vinifera HOM05D003611 ORTHO05D004281 6.5e-18 96.7 256 33.6
Nitab4.5_0000915g0210 Nicotiana tabacum HOM05D003611 ORTHO05D004281 1.9e-17 95.1 263 33.1
Manes.01G253100 Manihot esculenta HOM05D003611 ORTHO05D004281 2.5e-17 94.7 312 33.3
Nitab4.5_0010703g0040 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.5e-17 94.7 272 32.4
Duzib138G0252 Durio zibethinus HOM05D003611 ORTHO05D004281 3.2e-17 94.4 314 31.2
FAN03G1353 Fragaria x ananassa HOM05D003611 ORTHO05D004281 3.2e-17 94.4 267 31.1
FAN06G0771 Fragaria x ananassa HOM05D003611 ORTHO05D004281 3.2e-17 94.4 267 31.1
Gohir.D11G096500 Gossypium hirsutum HOM05D003611 ORTHO05D004281 3.2e-17 94.4 291 32.3
Prupe.2G176000 Prunus persica HOM05D003611 ORTHO05D004281 3.2e-17 94.4 325 29.8
RcHm_v2.0_Chr1g0357311 Rosa chinensis HOM05D003611 ORTHO05D004281 3.2e-17 94.4 266 31.2
Hund16671 Selenicereus undatus HOM05D003611 ORTHO05D004281 3.2e-17 94.4 298 29.9
FvH4_7g15120 Fragaria vesca HOM05D003611 ORTHO05D004281 4.2e-17 94.0 267 31.1
FAN06G4234 Fragaria x ananassa HOM05D003611 ORTHO05D004281 4.2e-17 94.0 267 31.1
Sc23g0002620 Simmondsia chinensis HOM05D003611 ORTHO05D004281 4.2e-17 94.0 518 26.4
Gohir.A11G091600 Gossypium hirsutum HOM05D003611 ORTHO05D004281 5.5e-17 93.6 268 33.6
Thecc.01G353800 Theobroma cacao HOM05D003611 ORTHO05D004281 5.5e-17 93.6 260 33.1
GSVIVG01028853001 Vitis vinifera HOM05D003611 ORTHO05D004281 7.2e-17 93.2 732 25.8
MD07G1132600 Malus domestica HOM05D003611 ORTHO05D004281 9.4e-17 92.8 282 31.6
CiPaw.01G065700 Carya illinoinensis HOM05D003611 ORTHO05D004281 1.2e-16 92.4 325 30.8
FAN10G4104 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.2e-16 92.4 263 31.2
Nn1g01656 Nelumbo nucifera HOM05D003611 ORTHO05D004281 1.2e-16 92.4 335 29.3
TWI14G0836 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.6e-16 92.0 263 33.1
Ciclev10018621m.g Citrus clementina HOM05D003611 ORTHO05D004281 2.1e-16 91.7 265 31.7
FAN10G1370 Fragaria x ananassa HOM05D003611 ORTHO05D004281 2.1e-16 91.7 263 31.2
ECA234G2210 Erigeron canadensis HOM05D003611 ORTHO05D004281 2.7e-16 91.3 258 30.6
Lj7A508G38 Lonicera japonica HOM05D003611 ORTHO05D004281 3.6e-16 90.9 248 31.5
Gohir.A11G091700 Gossypium hirsutum HOM05D003611 ORTHO05D004281 4.7e-16 90.5 330 31.2
COL.COLO4_12765 Corchorus olitorius HOM05D003611 ORTHO05D004281 6.1e-16 90.1 330 31.2
Gohir.D11G096300 Gossypium hirsutum HOM05D003611 ORTHO05D004281 8.0e-16 89.7 519 27.0
FAN01G0094 Fragaria x ananassa HOM05D003611 ORTHO05D004281 1.0e-15 89.4 267 30.3
Gorai.007G102600 Gossypium raimondii HOM05D003611 ORTHO05D004281 1.0e-15 89.4 519 27.0
Lj1g0014988 Lotus japonicus HOM05D003611 ORTHO05D004281 1.4e-15 89.0 294 29.6
Aqoxy7G00231 Aquilegia oxysepala HOM05D003611 ORTHO05D004281 1.8e-15 88.6 361 30.7
Peaxi162Scf00020g01228 Petunia axillaris HOM05D003611 ORTHO05D004281 1.8e-15 88.6 267 32.2
Solyc01g095020.3 Solanum lycopersicum HOM05D003611 ORTHO05D004281 1.8e-15 88.6 290 31.0
VMungo1383G2804 Vigna mungo HOM05D003611 ORTHO05D004281 2.3e-15 88.2 270 31.1
arahy.Tifrunner.gnm1.ann1.9C73IW Arachis hypogaea HOM05D003611 ORTHO05D004281 3.0e-15 87.8 278 30.9
Gorai.007G102800 Gossypium raimondii HOM05D003611 ORTHO05D004281 3.0e-15 87.8 291 31.3
MBI11_g13553_MAGBIO Magnolia biondii HOM05D003611 ORTHO05D004281 3.0e-15 87.8 329 29.8
arahy.Tifrunner.gnm1.ann1.I9FVBP Arachis hypogaea HOM05D003611 ORTHO05D004281 4.0e-15 87.4 278 30.9
MSTRG.20858 Avicennia marina HOM05D003611 ORTHO05D004281 5.2e-15 87.0 360 28.1
EL10Ac1g00365 Beta vulgaris HOM05D003611 ORTHO05D004281 6.8e-15 86.7 252 30.2
Atru.chr5.552 Acer truncatum HOM05D003611 ORTHO05D004281 8.8e-15 86.3 351 29.1
Sc01g0003270 Simmondsia chinensis HOM05D003611 ORTHO05D004281 8.8e-15 86.3 146 41.1
vmacro13239 Vaccinium macrocarpon HOM05D003611 ORTHO05D004281 8.8e-15 86.3 149 39.6
Glyma.18G237600 Glycine max HOM05D003611 ORTHO05D004281 1.2e-14 85.9 254 32.7
Potri.014G089200 Populus trichocarpa HOM05D003611 ORTHO05D004281 1.2e-14 85.9 250 32.0
Lsat_1_v5_gn_4_35681 Lactuca sativa HOM05D003611 ORTHO05D004281 1.5e-14 85.5 265 30.9
Cc02_g38450 Coffea canephora HOM05D003611 ORTHO05D004281 2.0e-14 85.1 252 31.0
Potri.004G073400 Populus trichocarpa HOM05D003611 ORTHO05D004281 2.0e-14 85.1 643 24.7
Sed0009698 Sechium edule HOM05D003611 ORTHO05D004281 2.0e-14 85.1 265 28.7
Sopen01g038800 Solanum pennellii HOM05D003611 ORTHO05D004281 2.0e-14 85.1 290 30.7
Glyma.09G255400 Glycine max HOM05D003611 ORTHO05D004281 2.6e-14 84.7 272 29.8
Oeu018963.2 Olea europaea HOM05D003611 ORTHO05D004281 2.6e-14 84.7 370 27.0
Sabra14G0064800 Salix brachista HOM05D003611 ORTHO05D004281 3.4e-14 84.3 267 30.7
Hund27250 Selenicereus undatus HOM05D003611 ORTHO05D004281 3.4e-14 84.3 229 31.4
HanXRQChr17g0562341 Helianthus annuus HOM05D003611 ORTHO05D004281 7.5e-14 83.2 262 30.2
SGA_v2.0_scaffold4G02289 Striga asiatica HOM05D003611 ORTHO05D004281 7.5e-14 83.2 376 28.7
TWI23G0144 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 7.5e-14 83.2 262 30.5
Duzib133G0517 Durio zibethinus HOM05D003611 ORTHO05D004281 9.8e-14 82.8 310 28.7
QL04p055101 Quercus lobata HOM05D003611 ORTHO05D004281 1.7e-13 82.0 281 29.5
ClCG05G001310 Citrullus lanatus HOM05D003611 ORTHO05D004281 2.8e-13 81.3 263 28.9
CANSAT56G4470 Cannabis sativa HOM05D003611 ORTHO05D004281 4.8e-13 80.5 310 28.4
DCAR_006945 Daucus carota HOM05D003611 ORTHO05D004281 4.8e-13 80.5 260 30.4
FAN09G1963 Fragaria x ananassa HOM05D010729 ORTHO05D011897 4.8e-13 80.5 185 35.1
Rhsim07G0011300 Rhododendron simsii HOM05D003611 ORTHO05D004281 8.3e-13 79.7 329 27.7
unitig_8.g3336 Utricularia gibba HOM05D003611 ORTHO05D004281 8.3e-13 79.7 231 33.8
MELO3C006087.2 Cucumis melo HOM05D003611 ORTHO05D004281 1.1e-12 79.3 261 29.1
Sabra02G0147500 Salix brachista HOM05D003611 ORTHO05D004281 1.8e-12 78.6 267 30.3
TWI59G0398 Tripterygium wilfordii HOM05D003611 ORTHO05D004281 1.8e-12 78.6 265 30.2
HPP92_002731 Vanilla planifolia HOM05D003611 ORTHO05D004281 2.4e-12 78.2 321 28.3
FAN08G2853 Fragaria x ananassa HOM05D010729 ORTHO05D011897 4.1e-12 77.4 185 34.6
Lalb_Chr17g0339131 Lupinus albus HOM05D003611 ORTHO05D004281 4.1e-12 77.4 310 27.4
Peaxi162Scf00585g00319 Petunia axillaris HOM05D003611 ORTHO05D004281 4.1e-12 77.4 259 29.0
Lalb_Chr10g0096711 Lupinus albus HOM05D003611 ORTHO05D004281 5.4e-12 77.0 251 29.1
MD01G1069900 Malus domestica HOM05D003611 ORTHO05D004281 5.4e-12 77.0 271 29.5
PSO782G0890 Papaver somniferum HOM05D003611 ORTHO05D004281 5.4e-12 77.0 263 28.5
Phvul.008G059100 Phaseolus vulgaris HOM05D003611 ORTHO05D004281 5.4e-12 77.0 259 31.7
AUR62004403 Chenopodium quinoa HOM05D003611 ORTHO05D004281 7.0e-12 76.6 313 27.8
Potri.002G163000 Populus trichocarpa HOM05D003611 ORTHO05D004281 7.0e-12 76.6 268 30.2
AUR62022609 Chenopodium quinoa HOM05D003611 ORTHO05D004281 9.1e-12 76.3 273 28.6
Lalb_Chr17g0339111 Lupinus albus HOM05D003611 ORTHO05D004281 9.1e-12 76.3 310 27.1
Migut.B01791 Erythranthe guttata HOM05D003611 ORTHO05D004281 1.2e-11 75.9 250 29.6
Eucgr.E00101 Eucalyptus grandis HOM05D003611 ORTHO05D004281 1.2e-11 75.9 292 28.4
PSO478G2290 Papaver somniferum HOM05D003611 ORTHO05D004281 1.2e-11 75.9 255 30.6
Sabra04G0048100 Salix brachista HOM05D003611 ORTHO05D011897 1.2e-11 75.9 635 25.4
CsaV3_3G008680 Cucumis sativus L. HOM05D003611 ORTHO05D004281 2.0e-11 75.1 263 27.8
Sed0010511 Sechium edule HOM05D003611 ORTHO05D004281 2.0e-11 75.1 263 28.5
AL6G52100 Arabidopsis lyrata HOM05D003611 ORTHO05D004281 3.5e-11 74.3 268 28.7
Ca_00818_v3 Cicer arietinum L. HOM05D003611 ORTHO05D004281 3.5e-11 74.3 261 29.5
BcaC01g06854 Brassica carinata HOM05D003611 ORTHO05D004281 5.9e-11 73.6 307 27.0
BolC3t16170H Brassica oleracea HOM05D003611 ORTHO05D004281 5.9e-11 73.6 305 27.9
Carub.0006s3636 Capsella rubella HOM05D003611 ORTHO05D004281 5.9e-11 73.6 265 28.3
C03p38980 Brassica napus HOM05D003611 ORTHO05D004281 7.7e-11 73.2 307 27.0
Thhalv10028394m.g Eutrema salsugineum HOM05D003611 ORTHO05D004281 7.7e-11 73.2 268 29.5
Sopen10g005780 Solanum pennellii HOM05D003611 ORTHO05D004281 7.7e-11 73.2 248 29.8
Psat3g107120 Pisum sativum HOM05D003611 ORTHO05D004281 1.0e-10 72.8 263 29.7
MSTRG.4840 Avicennia marina HOM05D003611 ORTHO05D004281 1.7e-10 72.0 335 27.2
TPR.G22300 Trifolium pratense HOM05D003611 ORTHO05D004281 1.7e-10 72.0 265 29.8
AT4G01290 Arabidopsis thaliana HOM05D003611 ORTHO05D004281 2.2e-10 71.6 266 27.8
Solyc10g012030.4 Solanum lycopersicum HOM05D003611 ORTHO05D004281 2.9e-10 71.2 248 29.4
A03p31960 Brassica napus HOM05D003611 ORTHO05D004281 3.8e-10 70.9 160 33.8
BraA03t12368Z Brassica rapa HOM05D003611 ORTHO05D004281 3.8e-10 70.9 160 33.8
Cpa.g.sc184.26 Carica papaya HOM05D003611 ORTHO05D004281 3.8e-10 70.9 130 39.2
SalBow3G4181 Salvia bowleyana HOM05D003611 ORTHO05D004281 1.5e-09 68.9 252 28.2
ATR0661G469 Amborella trichopoda HOM05D003611 ORTHO05D004281 1.9e-09 68.6 130 40.8
BcaB01g02151 Brassica carinata HOM05D003611 ORTHO05D004281 1.9e-09 68.6 160 33.1
Sp6g00840 Schrenkiella parvula HOM05D003611 ORTHO05D004281 1.9e-09 68.6 160 33.8
THA.LOC104801395 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 3.2e-09 67.8 266 27.4
BcaB01g02283 Brassica carinata HOM05D003611 ORTHO05D004281 7.2e-09 66.6 119 37.0
CARHR249020 Cardamine hirsuta HOM05D003611 ORTHO05D004281 7.2e-09 66.6 116 37.1
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 9.5e-09 66.2 267 27.3
Nitab4.5_0000200g0170 Nicotiana tabacum HOM05D003611 ORTHO05D004281 9.5e-09 66.2 176 33.5
THA.LOC104825859 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 9.5e-09 66.2 265 27.5
Actinidia18539 Actinidia chinensis HOM05D003611 ORTHO05D004281 2.1e-08 65.1 267 28.1
Nitab4.5_0000690g0050 Nicotiana tabacum HOM05D003611 ORTHO05D004281 2.1e-08 65.1 134 37.3
Aa31LG5G730 Aethionema arabicum HOM05D003611 ORTHO05D004281 2.8e-08 64.7 119 37.0
Dinv35257 Davidia involucrata HOM05D003611 ORTHO05D004281 3.6e-08 64.3 364 26.9
BcaC04g24140 Brassica carinata HOM05D003611 ORTHO05D004281 8.0e-08 63.2 267 27.7
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 8.0e-08 63.2 267 27.7
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 8.0e-08 63.2 267 27.7
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 8.0e-08 63.2 120 36.7
THA.LOC104817035 Tarenaya hassleriana HOM05D003611 ORTHO05D004281 8.0e-08 63.2 136 36.0
FAN03G1424 Fragaria x ananassa HOM05D010729 ORTHO05D011897 1.8e-07 62.0 49 61.2
BcaB05g23959 Brassica carinata HOM05D003611 ORTHO05D004281 4.0e-07 60.8 160 31.2
DCAR_008631 Daucus carota HOM05D003611 ORTHO05D004281 4.0e-07 60.8 120 37.5
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 2.0e-06 58.5 120 35.0
Hund11716 Selenicereus undatus HOM05D003611 ORTHO05D026482 2.0e-06 58.5 206 31.6


User provided reference genes

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