Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G300400 Prunus persica HOM05D002831 ORTHO05D004341 6.5e-101 370.9 214 100.0
MD07G1278500 Malus domestica HOM05D002831 ORTHO05D004341 3.0e-82 308.9 215 87.0
FAN03G0781 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.4e-79 299.3 215 83.3
FAN03G0359 Fragaria x ananassa HOM05D002831 ORTHO05D004341 2.0e-78 296.2 215 82.8
FAN01G0089 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.5e-78 295.0 215 81.9
FAN10G3196 Fragaria x ananassa HOM05D002831 ORTHO05D004341 1.0e-77 293.9 215 81.9
FvH4_7g30190 Fragaria vesca HOM05D002831 ORTHO05D004341 6.5e-77 291.2 215 81.9
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 6.5e-77 291.2 215 81.9
MD01G1207900 Malus domestica HOM05D002831 ORTHO05D004341 1.9e-76 289.7 215 82.8
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 9.7e-73 277.3 203 82.3
CANSAT11G0421 Cannabis sativa HOM05D002831 ORTHO05D004341 5.5e-68 261.5 215 76.7
FAN10G0429 Fragaria x ananassa HOM05D002831 ORTHO05D004341 8.8e-66 254.2 215 73.5
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 4.4e-65 251.9 211 75.8
CiPaw.06G003300 Carya illinoinensis HOM05D002831 ORTHO05D004341 5.7e-65 251.5 212 74.5
CiPaw.06G003100 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.8e-63 246.5 212 74.1
QL09p012962 Quercus lobata HOM05D002831 ORTHO05D004341 5.3e-63 245.0 212 74.1
Ciclev10005857m.g Citrus clementina HOM05D002831 ORTHO05D004341 4.2e-60 235.3 212 61.3
Cpa.g.sc107.104 Carica papaya HOM05D002831 ORTHO05D004341 5.5e-60 235.0 212 63.7
Thecc.03G183700 Theobroma cacao HOM05D002831 ORTHO05D004341 1.2e-59 233.8 212 63.7
Dinv28390 Davidia involucrata HOM05D002831 ORTHO05D004341 1.6e-59 233.4 209 63.2
COL.COLO4_10060 Corchorus olitorius HOM05D002831 ORTHO05D004341 1.4e-58 230.3 213 62.4
Potri.017G143215 Populus trichocarpa HOM05D002831 ORTHO05D004341 2.0e-57 226.5 214 61.2
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 9.8e-57 224.2 199 63.8
Atru.chr1.379 Acer truncatum HOM05D002831 ORTHO05D004341 1.7e-56 223.4 213 61.5
Atru.ctg97_1.16 Acer truncatum HOM05D002831 ORTHO05D004341 1.7e-56 223.4 213 61.5
Manes.14G023000 Manihot esculenta HOM05D002831 ORTHO05D004341 2.2e-56 223.0 214 66.8
Duzib068G1050 Durio zibethinus HOM05D002831 ORTHO05D004341 2.4e-55 219.5 212 60.8
Duzib084G1013 Durio zibethinus HOM05D002831 ORTHO05D004341 4.1e-55 218.8 212 61.3
TWI23G0387 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.0e-54 216.5 212 54.7
Duzib205G1365 Durio zibethinus HOM05D002831 ORTHO05D004341 1.7e-53 213.4 211 60.2
Manes.06G152100 Manihot esculenta HOM05D002831 ORTHO05D004341 2.9e-53 212.6 211 64.5
Actinidia34155 Actinidia chinensis HOM05D002831 ORTHO05D004341 6.5e-53 211.5 209 60.8
Haze_00039 Corylus avellana HOM05D002831 ORTHO05D004341 8.5e-53 211.1 145 72.4
Sabra17G0120100 Salix brachista HOM05D002831 ORTHO05D004341 2.5e-52 209.5 212 57.5
Potri.004G079900 Populus trichocarpa HOM05D002831 ORTHO05D004341 3.2e-52 209.1 212 57.5
CiPaw.12G018300 Carya illinoinensis HOM05D002831 ORTHO05D004341 1.2e-51 207.2 147 70.1
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 2.7e-51 206.1 212 56.1
TAR374G0609 Trochodendron aralioides HOM05D002831 ORTHO05D004341 8.0e-51 204.5 211 59.2
Phvul.004G109000 Phaseolus vulgaris HOM05D002831 ORTHO05D004341 1.2e-49 200.7 202 66.3
Glyma.16G179300 Glycine max HOM05D002831 ORTHO05D004341 2.0e-49 199.9 202 66.8
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 2.0e-49 199.9 202 66.3
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 1.3e-48 197.2 204 66.2
Eucgr.A02748 Eucalyptus grandis HOM05D002831 ORTHO05D004341 8.3e-48 194.5 213 54.9
Actinidia08576 Actinidia chinensis HOM05D002831 ORTHO05D004341 1.8e-47 193.4 209 57.4
CSS0004722 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.8e-47 193.4 209 52.6
CSS0021117 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 1.8e-47 193.4 209 52.6
CSS0012099 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.4e-47 193.0 209 53.6
CSS0034926 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D004341 2.4e-47 193.0 209 53.6
Gohir.D09G177200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.1e-47 192.6 213 57.3
Gorai.006G199200 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.1e-47 192.6 213 56.8
Cc02_g02420 Coffea canephora HOM05D002831 ORTHO05D004341 9.2e-47 191.0 209 56.5
Lj1P1004T73 Lonicera japonica HOM05D002831 ORTHO05D004341 1.2e-46 190.7 206 52.4
PGR042G3073 Punica granatum HOM05D002831 ORTHO05D004341 1.6e-46 190.3 212 57.5
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 1.6e-46 190.3 198 59.6
Gohir.D12G256900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 3.5e-46 189.1 213 57.3
Gorai.008G275100 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.5e-46 189.1 213 57.3
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.0e-45 187.6 211 59.7
TAR375G0840 Trochodendron aralioides HOM05D002831 ORTHO05D004341 1.7e-45 186.8 212 64.2
TWI14G0525 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 2.9e-45 186.0 214 53.7
Gohir.A12G255500 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.6e-45 184.9 213 56.3
SalBow4G1512 Salvia bowleyana HOM05D002831 ORTHO05D004341 6.6e-45 184.9 210 57.6
Glyma.09G132500 Glycine max HOM05D002831 ORTHO05D004341 8.6e-45 184.5 203 60.1
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.1e-44 184.1 198 58.6
Peaxi162Scf00618g00748 Petunia axillaris HOM05D001680 ORTHO05D004341 1.6e-43 180.3 209 53.1
Gohir.A09G182600 Gossypium hirsutum HOM05D002831 ORTHO05D004341 2.1e-43 179.9 210 56.7
Oeu036905.1 Olea europaea HOM05D002831 ORTHO05D004341 4.7e-43 178.7 213 53.5
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 1.0e-42 177.6 212 62.3
Lalb_Chr03g0034811 Lupinus albus HOM05D002831 ORTHO05D004341 1.4e-42 177.2 206 63.6
PGSC0003DMG400028898 Solanum tuberosum HOM05D002831 ORTHO05D004341 1.4e-42 177.2 209 53.6
TWI39G0102 Tripterygium wilfordii HOM05D002831 ORTHO05D004341 6.8e-42 174.9 213 50.2
Sopen06g012030 Solanum pennellii HOM05D002831 ORTHO05D004341 1.2e-41 174.1 209 52.6
Oeu060465.1 Olea europaea HOM05D002831 ORTHO05D004341 2.6e-41 172.9 201 49.8
Gorai.007G012600 Gossypium raimondii HOM05D002831 ORTHO05D004341 3.4e-41 172.6 214 55.1
Nitab4.5_0003825g0080 Nicotiana tabacum HOM05D002831 ORTHO05D004341 9.8e-41 171.0 211 54.0
Gohir.D11G011100 Gossypium hirsutum HOM05D002831 ORTHO05D004341 1.3e-40 170.6 214 54.7
Gohir.A11G011900 Gossypium hirsutum HOM05D002831 ORTHO05D004341 6.4e-40 168.3 214 54.7
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 1.1e-39 167.5 211 52.6
Peaxi162Scf00444g00016 Petunia axillaris HOM05D002831 ORTHO05D004341 2.4e-39 166.4 211 53.1
CsaV3_3G017430 Cucumis sativus L. HOM05D002831 ORTHO05D004341 2.0e-38 163.3 206 59.2
DCAR_020268 Daucus carota HOM05D002831 ORTHO05D004341 2.0e-38 163.3 209 45.0
Rhsim09G0200400 Rhododendron simsii HOM05D002831 ORTHO05D004341 2.0e-38 163.3 209 51.7
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 2.7e-38 162.9 200 56.5
MELO3C006940.2 Cucumis melo HOM05D002831 ORTHO05D004341 4.6e-38 162.2 206 59.7
Actinidia31838 Actinidia chinensis HOM05D002831 ORTHO05D004341 7.8e-38 161.4 212 51.9
MSTRG.27090 Avicennia marina HOM05D002831 ORTHO05D004341 7.8e-38 161.4 209 54.1
ClCG05G008340 Citrullus lanatus HOM05D002831 ORTHO05D004341 1.0e-37 161.0 206 60.2
DCAR_009393 Daucus carota HOM05D002831 ORTHO05D004341 1.0e-37 161.0 209 48.8
Hma1.2p1_0327F.1_g126410 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.0e-37 161.0 208 55.3
Aqoxy7G00243 Aquilegia oxysepala HOM05D002831 ORTHO05D004341 1.3e-37 160.6 214 50.5
Nitab4.5_0000572g0140 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.9e-37 159.1 211 49.8
Gohir.A08G098200 Gossypium hirsutum HOM05D002831 ORTHO05D004341 5.0e-37 158.7 200 54.5
Lalb_Chr02g0141231 Lupinus albus HOM05D002831 ORTHO05D004341 5.0e-37 158.7 207 53.1
Nitab4.5_0000084g0400 Nicotiana tabacum HOM05D002831 ORTHO05D004341 5.0e-37 158.7 211 49.8
Lj5g0008853 Lotus japonicus HOM05D002831 ORTHO05D004341 6.6e-37 158.3 204 60.3
Gohir.D08G109800 Gossypium hirsutum HOM05D002831 ORTHO05D004341 8.6e-37 157.9 200 56.0
EL10Ac3g05428 Beta vulgaris HOM05D002831 ORTHO05D004341 1.1e-36 157.5 191 52.4
Glyma.10G231300 Glycine max HOM05D002831 ORTHO05D004341 1.5e-36 157.1 206 59.7
AUR62021127 Chenopodium quinoa HOM05D002831 ORTHO05D004341 3.3e-36 156.0 191 47.6
THA.LOC104800271 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 5.6e-36 155.2 195 46.7
PGSC0003DMG400010167 Solanum tuberosum HOM05D002831 ORTHO05D004341 9.5e-36 154.5 198 52.5
CAN.G126.12 Capsicum annuum HOM05D002831 ORTHO05D004341 1.2e-35 154.1 212 50.0
AUR62031417 Chenopodium quinoa HOM05D002831 ORTHO05D004341 2.8e-35 152.9 191 46.6
Glyma.20G162500 Glycine max HOM05D002831 ORTHO05D004341 8.0e-35 151.4 206 58.3
Sopen03g003930 Solanum pennellii HOM05D002831 ORTHO05D004341 8.0e-35 151.4 199 52.8
MSTRG.74 Avicennia marina HOM05D002831 ORTHO05D004341 4.0e-34 149.1 209 49.3
PSO478G4817 Papaver somniferum HOM05D002831 ORTHO05D004341 6.8e-34 148.3 214 47.2
Sed0001656 Sechium edule HOM05D002831 ORTHO05D004341 1.2e-33 147.5 205 59.0
Sed0011382 Sechium edule HOM05D002831 ORTHO05D004341 3.4e-33 146.0 206 55.8
Solyc06g036250.2 Solanum lycopersicum HOM05D002831 ORTHO05D004341 5.8e-33 145.2 184 50.0
PSO782G2858 Papaver somniferum HOM05D002831 ORTHO05D004341 7.5e-33 144.8 215 46.5
Lalb_Chr06g0161301 Lupinus albus HOM05D002831 ORTHO05D004341 1.3e-32 144.1 206 56.8
MBI11_g04751_MAGBIO Magnolia biondii HOM05D002831 ORTHO05D004341 1.1e-31 141.0 214 58.4
Ca_10728_v3 Cicer arietinum L. HOM05D002831 ORTHO05D004341 2.4e-31 139.8 206 56.8
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 4.1e-31 139.0 200 46.0
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 1.2e-30 137.5 149 51.0
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 3.5e-30 136.0 130 50.0
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 7.8e-30 134.8 203 55.2
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 1.3e-29 134.0 206 55.8
THA.LOC104811959 Tarenaya hassleriana HOM05D002831 ORTHO05D004341 1.7e-29 133.7 266 37.2
Psat6g196360 Pisum sativum HOM05D002831 ORTHO05D004341 6.6e-29 131.7 203 58.1
Sp7g23710 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.5e-28 130.6 212 42.0
MSTRG.8713 Avicennia marina HOM05D002831 ORTHO05D004341 1.9e-28 130.2 204 54.4
CAN.G204.16 Capsicum annuum HOM05D002831 ORTHO05D004341 2.5e-28 129.8 206 47.6
AL7G27410 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 4.3e-28 129.0 212 42.5
Carub.0007s1530 Capsella rubella HOM05D002831 ORTHO05D004341 9.5e-28 127.9 212 42.9
CARHR233110 Cardamine hirsuta HOM05D002831 ORTHO05D004341 9.5e-28 127.9 212 42.0
Aa31LG3G8920 Aethionema arabicum HOM05D002831 ORTHO05D004341 1.2e-27 127.5 198 41.4
Ah.13g069150 Amaranthus hybridus HOM05D002831 ORTHO05D004341 1.2e-27 127.5 189 45.5
AT4G25670 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.2e-27 127.5 213 41.8
ATR0661G020 Amborella trichopoda HOM05D002831 ORTHO05D004341 3.6e-27 125.9 224 42.9
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 4.7e-27 125.6 211 46.9
Thhalv10027473m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 1.1e-26 124.4 212 40.6
Sc19g0001290 Simmondsia chinensis HOM05D002831 ORTHO05D004341 1.2e-25 120.9 209 45.5
unitig_37.g11969 Utricularia gibba HOM05D002831 ORTHO05D004341 1.2e-25 120.9 197 46.2
BraA01t01645Z Brassica rapa HOM05D002831 ORTHO05D004341 1.5e-25 120.6 213 41.8
BNapus_Darmor_BZH_scaffold_232p00070 Brassica napus HOM05D002831 ORTHO05D004341 3.4e-25 119.4 200 41.5
AL7G27390 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 7.5e-25 118.2 213 41.3
SGA_v2.0_scaffold113G31691 Striga asiatica HOM05D002831 ORTHO05D008967 7.5e-25 118.2 203 46.3
BraA02t06237Z Brassica rapa HOM05D002831 ORTHO05D004341 9.8e-25 117.9 198 40.9
A02p11720 Brassica napus HOM05D002831 ORTHO05D004341 2.9e-24 116.3 198 40.4
AT4G25690 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 6.4e-24 115.2 211 41.2
BolC1t02046H Brassica oleracea HOM05D002831 ORTHO05D004341 2.4e-23 113.2 214 40.7
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 7.1e-23 111.7 197 46.7
TPR.G21560 Trifolium pratense HOM05D002831 ORTHO05D004341 1.6e-22 110.5 204 49.5
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 2.1e-22 110.2 141 54.6
A01p16930 Brassica napus HOM05D002831 ORTHO05D004341 4.6e-22 109.0 196 41.3
Sp7g23730 Schrenkiella parvula HOM05D002831 ORTHO05D004341 1.3e-21 107.5 201 43.8
Lalb_Chr21g0305221 Lupinus albus HOM05D002831 ORTHO05D004341 2.3e-21 106.7 174 54.6
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 5.1e-21 105.5 203 46.8
Carub.0008s1268 Capsella rubella HOM05D002831 ORTHO05D004341 1.5e-20 104.0 197 38.6
C01p21210 Brassica napus HOM05D002831 ORTHO05D004341 2.5e-20 103.2 196 40.8
CARHR233150 Cardamine hirsuta HOM05D002831 ORTHO05D004341 2.5e-20 103.2 213 40.4
Medtr1g100090 Medicago truncatula HOM05D002831 ORTHO05D004341 2.5e-20 103.2 131 67.9
Thhalv10026278m.g Eutrema salsugineum HOM05D002831 ORTHO05D004341 4.3e-20 102.4 205 36.6
AL8G27020 Arabidopsis lyrata HOM05D002831 ORTHO05D004341 7.3e-20 101.7 198 38.4
AT5G52550 Arabidopsis thaliana HOM05D002831 ORTHO05D004341 1.2e-19 100.9 202 37.6
BcaC06g32789 Brassica carinata HOM05D002831 ORTHO05D004341 1.2e-19 100.9 216 38.4
BolC1t02049H Brassica oleracea HOM05D002831 ORTHO05D004341 1.6e-19 100.5 214 43.5
HPP92_022210 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.1e-19 100.1 199 40.2
HPP92_022228 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.8e-19 99.8 199 40.2
BcaC03g14518 Brassica carinata HOM05D002831 ORTHO05D004341 8.1e-19 98.2 120 43.3
BcaNung07307 Brassica carinata HOM05D002831 ORTHO05D004341 1.1e-18 97.8 213 37.6
Os02g0104200 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.1e-18 97.8 211 48.8
Zm00001eb229390 Zea mays HOM05D002831 ORTHO05D004341 3.1e-18 96.3 213 50.2
BcaB05g21966 Brassica carinata HOM05D002831 ORTHO05D004341 4.0e-18 95.9 193 42.0
Nn1g08525 Nelumbo nucifera HOM05D002831 ORTHO05D004341 5.2e-18 95.5 106 49.1
BraA01t01648Z Brassica rapa HOM05D002831 ORTHO05D004341 6.8e-18 95.1 217 38.2
SGA_v2.0_scaffold10G05296 Striga asiatica HOM05D002831 ORTHO05D004341 7.6e-17 91.7 209 35.4
ECA232G1618 Erigeron canadensis HOM05D002831 ORTHO05D004341 1.3e-16 90.9 211 45.5
SEGI_15574 Sequoiadendron giganteum HOM05D002831 ORTHO05D004341 2.9e-16 89.7 232 38.8
unitig_0.g2470 Utricularia gibba HOM05D002831 ORTHO05D004341 4.9e-16 89.0 194 36.1
HPP92_022231 Vanilla planifolia HOM05D002831 ORTHO05D004341 7.1e-15 85.1 149 40.9
HPP92_008924 Vanilla planifolia HOM05D002831 ORTHO05D004341 2.1e-14 83.6 189 40.7
BraA03t14689Z Brassica rapa HOM05D000048 ORTHO05D000445 1.0e-13 81.3 102 60.8
Lsat_1_v5_gn_2_131301 Lactuca sativa HOM05D002831 ORTHO05D004341 1.0e-13 81.3 214 49.5
HanXRQChr14g0462531 Helianthus annuus HOM05D002831 ORTHO05D004341 3.0e-13 79.7 226 45.6
C07p54490 Brassica napus HOM05D000048 ORTHO05D000445 1.2e-11 74.3 103 47.6
BolC7t45934H Brassica oleracea HOM05D000048 ORTHO05D000445 1.2e-11 74.3 103 47.6
Os06g0106900 Oryza sativa ssp. japonica HOM05D002831 ORTHO05D004341 1.2e-11 74.3 174 50.6
ECA238G2131 Erigeron canadensis HOM05D002831 ORTHO05D004341 8.1e-11 71.6 208 46.6
VMungo0251G0932 Vigna mungo HOM05D002831 ORTHO05D004341 1.1e-10 71.2 117 35.0
Lsat_1_v5_gn_9_56481 Lactuca sativa HOM05D002831 ORTHO05D004341 3.4e-09 66.2 210 41.9
CARHR265540 Cardamine hirsuta HOM05D002831 ORTHO05D004341 5.8e-09 65.5 101 45.5
Carub.0007s1527 Capsella rubella HOM05D002831 ORTHO05D004341 4.9e-08 62.4 77 50.6


User provided reference genes

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