Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 0.0e+00 1362.8 701 100.0
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 0.0e+00 1093.2 702 82.1
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.4e-309 1065.8 702 80.9
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 2.6e-300 1035.0 703 79.9
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 4.2e-274 948.0 702 75.4
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 2.5e-271 938.7 703 74.8
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.5e-259 897.5 708 71.6
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 7.2e-258 894.0 701 72.2
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.3e-256 889.0 700 71.7
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.4e-253 879.0 702 71.2
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 1.3e-219 766.9 717 61.5
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 3.3e-218 762.3 716 61.6
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 2.9e-214 749.2 712 61.4
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 1.2e-209 733.8 713 59.5
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 7.5e-207 724.5 560 73.6
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 3.7e-206 722.2 709 58.7
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 9.2e-205 717.6 709 59.9
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.6e-204 716.8 722 57.8
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 2.1e-204 716.5 713 58.9
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 1.3e-203 713.8 712 58.8
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.9e-202 709.9 710 60.1
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 3.3e-202 709.1 703 59.5
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 7.3e-202 708.0 712 59.1
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 2.4e-197 693.0 703 57.5
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 9.2e-197 691.0 717 55.8
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 9.2e-197 691.0 714 56.7
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 6.0e-196 688.3 714 57.1
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 1.7e-195 686.8 714 56.7
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.7e-195 686.8 715 56.1
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.3e-195 686.4 711 56.5
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 5.6e-194 681.8 710 56.9
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 1.2e-193 680.6 714 56.3
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 1.4e-192 677.2 638 60.7
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 8.9e-192 674.5 708 57.3
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 7.6e-191 671.4 737 55.5
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.7e-190 670.2 722 56.8
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 2.2e-190 669.8 764 54.3
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 7.1e-189 664.8 701 55.9
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 4.6e-188 662.1 706 55.8
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.3e-187 659.8 695 56.4
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 5.1e-187 658.7 695 56.4
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 8.7e-187 657.9 709 55.3
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 1.3e-185 654.1 706 55.1
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.8e-185 652.1 695 56.0
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 6.9e-184 648.3 715 55.2
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 4.4e-183 645.6 707 55.7
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 1.7e-182 643.7 711 55.0
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 2.4e-181 639.8 705 55.2
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 5.4e-181 638.6 721 56.4
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 3.5e-180 636.0 713 54.1
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 6.6e-179 631.7 710 54.1
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 6.6e-179 631.7 717 54.0
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 9.6e-178 627.9 718 53.8
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 9.6e-178 627.9 718 53.6
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 9.9e-175 617.8 715 53.1
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 3.8e-174 615.9 704 54.1
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 1.1e-173 614.4 825 48.8
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 7.9e-172 608.2 730 53.0
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 5.1e-171 605.5 779 49.9
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 5.6e-170 602.1 726 53.9
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 1.7e-166 590.5 722 51.7
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 1.9e-165 587.0 637 57.3
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 4.2e-165 585.9 620 56.8
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 7.1e-165 585.1 726 51.4
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 1.0e-163 581.3 708 51.8
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 1.1e-162 577.8 712 50.0
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 4.8e-161 572.4 715 49.5
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 1.8e-160 570.5 645 54.7
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 5.3e-160 568.9 723 50.3
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 1.9e-157 560.5 708 50.7
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 4.6e-156 555.8 732 47.4
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 3.0e-155 553.1 741 46.8
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 2.5e-154 550.1 811 46.1
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 1.6e-153 547.4 725 50.5
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 3.4e-151 539.7 719 47.7
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 3.4e-151 539.7 705 49.4
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 4.5e-151 539.3 777 46.8
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 1.0e-150 538.1 711 49.5
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 1.9e-149 533.9 720 47.2
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 3.6e-148 529.6 717 47.0
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 5.1e-147 525.8 705 47.9
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 2.5e-146 523.5 710 46.8
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 6.3e-145 518.8 523 58.7
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.4e-144 516.9 711 47.4
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.5e-143 512.7 708 46.5
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 5.9e-143 512.3 710 46.2
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 5.0e-142 509.2 712 48.7
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 1.9e-141 507.3 704 46.6
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 5.5e-141 505.8 635 50.1
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 1.6e-140 504.2 712 47.6
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 1.8e-139 500.7 712 45.8
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 4.4e-138 496.1 708 46.0
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 4.4e-138 496.1 707 45.8
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 5.7e-138 495.7 712 46.3
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 7.4e-138 495.4 703 45.7
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 2.2e-134 483.8 708 46.8
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 4.2e-133 479.6 718 44.3
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 7.2e-133 478.8 708 45.5
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 8.8e-131 471.9 710 47.0
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 2.0e-130 470.7 655 46.7
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 1.4e-128 464.5 774 42.0
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 3.5e-127 459.9 569 49.6
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 1.7e-126 457.6 788 41.1
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 2.2e-126 457.2 653 44.9
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 4.7e-124 449.5 734 41.7
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.0e-122 444.1 783 39.0
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 7.0e-120 435.6 695 42.4
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 5.9e-119 432.6 633 44.4
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 2.9e-118 430.3 710 42.3
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.2e-114 418.3 639 44.1
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 7.0e-112 409.1 653 44.1
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.6e-111 407.9 638 42.9
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 6.6e-110 402.5 721 41.1
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 3.3e-109 400.2 685 42.8
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 4.4e-106 389.8 910 36.7
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 5.7e-106 389.4 692 41.5
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 1.7e-105 387.9 683 41.6
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.9e-105 387.1 710 40.0
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 8.3e-105 385.6 714 38.8
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 1.1e-104 385.2 705 41.6
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 9.2e-104 382.1 298 67.1
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 1.2e-103 381.7 690 40.0
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 2.0e-103 380.9 691 40.7
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 3.5e-103 380.2 685 40.6
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 1.3e-102 378.3 685 40.9
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 3.9e-102 376.7 683 40.0
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 1.9e-101 374.4 684 39.6
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 7.3e-101 372.5 581 44.8
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 2.0e-98 364.4 688 39.5
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 4.4e-98 363.2 686 39.2
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 2.2e-97 360.9 684 39.6
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 2.9e-97 360.5 700 38.6
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 2.4e-96 357.5 684 37.3
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 2.3e-94 350.9 686 38.6
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.1e-93 348.6 712 37.2
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 9.5e-93 345.5 350 60.0
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 2.8e-92 344.0 869 34.1
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 4.4e-90 336.7 682 37.4
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 2.5e-85 320.9 356 54.8
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 5.6e-85 319.7 719 37.0
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 7.3e-85 319.3 298 59.4
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 1.2e-84 318.5 578 41.2
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 8.9e-83 312.4 578 40.1
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.2e-79 302.0 266 62.4
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 1.9e-77 294.7 713 34.9
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 7.3e-77 292.7 438 46.3
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 3.1e-75 287.3 320 51.2
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 3.4e-74 283.9 621 38.0
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 5.6e-69 266.5 498 41.8
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 2.8e-68 264.2 279 53.4
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 4.8e-68 263.5 329 51.1
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 1.1e-67 262.3 459 40.1
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 2.2e-65 254.6 642 34.4
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 4.8e-60 236.9 590 32.5
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 3.4e-50 204.1 142 75.4
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 6.7e-46 189.9 139 67.6
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 4.3e-45 187.2 461 36.4
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 2.6e-42 177.9 473 35.7
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 1.3e-38 165.6 261 45.6
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 3.7e-36 157.5 404 35.6
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 1.4e-35 155.6 302 37.7
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 5.3e-35 153.7 474 33.8
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 1.2e-31 142.5 207 42.5
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.6e-31 141.0 117 62.4
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 4.3e-29 134.0 467 32.8
FAN06G0571 Fragaria x ananassa HOM05D003626 ORTHO05D004255 6.3e-28 130.2 92 75.0
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 6.9e-27 126.7 139 54.7
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 1.3e-25 122.5 207 44.9
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 3.8e-25 120.9 526 27.6
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.4e-22 112.5 111 55.0
Rhsim05G0045800 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.3e-20 105.9 349 33.8
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 2.2e-12 78.6 67 59.7
BraA01t01640Z Brassica rapa HOM05D002456 ORTHO05D002994 8.2e-12 76.6 206 36.9
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 8.2e-12 76.6 67 64.2
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.1e-11 74.7 70 51.4
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 1.6e-10 72.4 194 34.0
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.5e-10 71.2 55 70.9
HPP92_028446 Vanilla planifolia HOM05D003626 ORTHO05D004255 4.5e-10 70.9 96 44.8
SHI13766 Sapria himalayana HOM05D003626 ORTHO05D004255 6.5e-09 67.0 203 31.5
HPP92_001477 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.5e-09 67.0 56 58.9


User provided reference genes

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