Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G297100 Prunus persica HOM05D008240 ORTHO05D010333 4.9e-28 127.1 64 100.0
RcHm_v2.0_Chr1g0377781 Rosa chinensis HOM05D008240 ORTHO05D010333 9.5e-24 112.8 64 84.4
FvH4_7g29780 Fragaria vesca HOM05D008240 ORTHO05D010333 6.4e-20 100.1 58 81.0
VMungo1127G0785 Vigna mungo HOM05D008240 ORTHO05D010333 1.6e-18 95.5 61 77.0
Lalb_Chr21g0305111 Lupinus albus HOM05D008240 ORTHO05D010333 2.0e-18 95.1 58 77.6
Haze_00010 Corylus avellana HOM05D008240 ORTHO05D010333 3.5e-18 94.4 63 77.8
Phvul.011G006600 Phaseolus vulgaris HOM05D008240 ORTHO05D010333 3.5e-18 94.4 61 75.4
Glyma.12G005800 Glycine max HOM05D008240 ORTHO05D010333 7.8e-18 93.2 61 77.0
Medtr1g100890 Medicago truncatula HOM05D008240 ORTHO05D010333 1.7e-17 92.0 57 78.9
Psat6g197280 Pisum sativum HOM05D008240 ORTHO05D010333 1.7e-17 92.0 63 73.0
Atru.chr1.425 Acer truncatum HOM05D008240 ORTHO05D010333 3.9e-17 90.9 57 84.2
TPR.G27012 Trifolium pratense HOM05D008240 ORTHO05D010333 5.0e-17 90.5 50 86.0
Manes.06G149600 Manihot esculenta HOM05D008240 ORTHO05D010333 1.5e-16 89.0 48 87.5
Manes.14G024900 Manihot esculenta HOM05D008240 ORTHO05D010333 1.9e-16 88.6 58 75.9
COL.COLO4_03572 Corchorus olitorius HOM05D008240 ORTHO05D010333 2.5e-16 88.2 48 85.4
COL.COLO4_28004 Corchorus olitorius HOM05D008240 ORTHO05D010333 2.5e-16 88.2 48 85.4
Gorai.008G276000 Gossypium raimondii HOM05D008240 ORTHO05D010333 2.5e-16 88.2 48 85.4
arahy.Tifrunner.gnm1.ann1.ES0TVM Arachis hypogaea HOM05D008240 ORTHO05D010333 3.3e-16 87.8 61 68.9
CiPaw.06G002300 Carya illinoinensis HOM05D008240 ORTHO05D010333 3.3e-16 87.8 63 73.0
Dinv28418 Davidia involucrata HOM05D008240 ORTHO05D002863 4.3e-16 87.4 63 73.0
Gohir.A12G256400 Gossypium hirsutum HOM05D008240 ORTHO05D010333 7.3e-16 86.7 48 85.4
Gohir.D12G257700 Gossypium hirsutum HOM05D008240 ORTHO05D010333 7.3e-16 86.7 48 85.4
Thecc.03G179600 Theobroma cacao HOM05D008240 ORTHO05D010333 7.3e-16 86.7 48 85.4
Ciclev10006392m.g Citrus clementina HOM05D008240 ORTHO05D010333 9.5e-16 86.3 48 87.5
arahy.Tifrunner.gnm1.ann1.MUHC0Z Arachis hypogaea HOM05D002671 ORTHO05D010333 1.2e-15 85.9 61 67.2
Sc13g0008860 Simmondsia chinensis HOM05D008240 ORTHO05D010333 1.2e-15 85.9 55 76.4
Potri.001G178400 Populus trichocarpa HOM05D008240 ORTHO05D010333 2.1e-15 85.1 49 81.6
Glyma.09G230900 Glycine max HOM05D008240 ORTHO05D010333 2.8e-15 84.7 61 70.5
Cpa.g.sc107.72 Carica papaya HOM05D008240 ORTHO05D010333 6.2e-15 83.6 58 72.4
AUR62021162 Chenopodium quinoa HOM05D008240 ORTHO05D010333 6.2e-15 83.6 51 76.5
CSS0023725 Camellia sinensis var. sinensis HOM05D008240 ORTHO05D010333 1.0e-14 82.8 61 72.1
Hma1.2p1_0227F.1_g095850 Hydrangea macrophylla HOM05D008240 ORTHO05D010333 1.4e-14 82.4 45 86.7
Lsat_1_v5_gn_9_55121 Lactuca sativa HOM05D008240 ORTHO05D010333 1.4e-14 82.4 46 80.4
Actinidia34129 Actinidia chinensis HOM05D000206 ORTHO05D002863 4.0e-14 80.9 62 67.7
Sabra01G0148200 Salix brachista HOM05D008240 ORTHO05D010333 4.0e-14 80.9 61 65.6
Nn6g33426 Nelumbo nucifera HOM05D008240 ORTHO05D010333 8.9e-14 79.7 54 70.4
vmacro06659 Vaccinium macrocarpon HOM05D000206 ORTHO05D002863 8.9e-14 79.7 58 72.4
BraA06t24953Z Brassica rapa HOM05D008240 ORTHO05D010333 1.2e-13 79.3 53 67.9
DCAR_020258 Daucus carota HOM05D008240 ORTHO05D010333 1.2e-13 79.3 49 75.5
EL10Ac3g05605 Beta vulgaris HOM05D008240 ORTHO05D010333 1.5e-13 79.0 48 75.0
EL10Ac3g05606 Beta vulgaris HOM05D008240 ORTHO05D010333 1.5e-13 79.0 48 75.0
ClCG10G005770 Citrullus lanatus HOM05D008240 ORTHO05D010333 1.5e-13 79.0 47 76.6
BolC8t50025H Brassica oleracea HOM05D008240 ORTHO05D010333 3.4e-13 77.8 53 67.9
Oeu045392.1 Olea europaea HOM05D008240 ORTHO05D010333 4.4e-13 77.4 45 80.0
Carub.0005s1524 Capsella rubella HOM05D008240 ORTHO05D010333 5.8e-13 77.0 54 64.8
MELO3C025428.2 Cucumis melo HOM05D008240 ORTHO05D010333 9.8e-13 76.3 44 79.5
A06p18700 Brassica napus HOM05D002671 ORTHO05D010333 1.7e-12 75.5 50 70.0
CARHR157860 Cardamine hirsuta HOM05D008240 ORTHO05D010333 1.7e-12 75.5 55 63.6
Sed0005066 Sechium edule HOM05D008240 ORTHO05D010333 1.7e-12 75.5 45 75.6
CAN.G1175.10 Capsicum annuum HOM05D008240 ORTHO05D010333 3.7e-12 74.3 45 75.6
GSVIVG01028913001 Vitis vinifera HOM05D008240 ORTHO05D010333 8.3e-12 73.2 42 81.0
Peaxi162Scf00444g00412 Petunia axillaris HOM05D008240 ORTHO05D010333 2.4e-11 71.6 48 70.8
Aqoxy7G00310 Aquilegia oxysepala HOM05D008240 ORTHO05D010333 3.2e-11 71.2 55 61.8
CsaV3_3G005460 Cucumis sativus L. HOM05D008240 ORTHO05D010333 4.1e-11 70.9 44 75.0
Solyc03g025480.4 Solanum lycopersicum HOM05D008240 ORTHO05D010333 7.0e-11 70.1 56 62.5
Sopen03g004320 Solanum pennellii HOM05D008240 ORTHO05D010333 7.0e-11 70.1 56 62.5
PGSC0003DMG400015797 Solanum tuberosum HOM05D008240 ORTHO05D010333 2.0e-10 68.6 58 56.9
Migut.F01103 Erythranthe guttata HOM05D008240 ORTHO05D010333 1.1e-08 62.8 46 63.0
QL07p048914 Quercus lobata HOM05D008240 ORTHO05D010333 1.5e-08 62.4 35 80.0
Os07g0175200 Oryza sativa ssp. japonica HOM05D008240 ORTHO05D010333 2.5e-08 61.6 44 63.6
Nitab4.5_0004439g0090 Nicotiana tabacum HOM05D008240 ORTHO05D010333 3.3e-08 61.2 34 76.5
Nitab4.5_0000084g0100 Nicotiana tabacum HOM05D008240 ORTHO05D010333 5.6e-08 60.5 40 72.5
Ah.05g180620 Amaranthus hybridus HOM05D011433 ORTHO05D013366 1.1e-06 56.2 56 50.0
Nitab4.5_0000885g0010 Nicotiana tabacum HOM05D011433 ORTHO05D010333 1.8e-06 55.5 56 50.0
Gohir.A07G142400 Gossypium hirsutum HOM05D011433 ORTHO05D013366 4.0e-06 54.3 55 47.3
Gorai.001G169500 Gossypium raimondii HOM05D011433 ORTHO05D013366 4.0e-06 54.3 55 47.3
Gohir.D07G148300 Gossypium hirsutum HOM05D011433 ORTHO05D013366 5.2e-06 53.9 50 48.0
Mapoly0108s0016 Marchantia polymorpha HOM05D008240 ORTHO05D010333 6.8e-06 53.5 52 51.9
Sabra06G0129100 Salix brachista HOM05D008240 ORTHO05D010333 6.8e-06 53.5 39 69.2
Sabra12G0001400 Salix brachista HOM05D008240 ORTHO05D010333 6.8e-06 53.5 39 69.2
Thecc.01G359100 Theobroma cacao HOM05D011433 ORTHO05D013366 6.8e-06 53.5 46 56.5


User provided reference genes

Program Settings