Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 2.8e-64 248.4 125 100.0
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 4.4e-33 144.8 122 66.4
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 6.1e-27 124.4 125 56.8
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-24 116.3 119 55.5
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.4e-23 112.5 119 54.6
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.6e-22 109.8 119 55.5
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 5.0e-21 104.8 114 55.3
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-20 103.2 114 54.4
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.5e-20 103.2 114 54.4
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 1.1e-15 87.0 114 49.1
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 7.0e-15 84.3 117 46.2
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 9.2e-15 84.0 119 44.5
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 2.3e-13 79.3 123 43.1
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 5.1e-13 78.2 119 45.4
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 1.5e-12 76.6 126 39.7
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 1.9e-12 76.3 115 40.9
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 4.3e-12 75.1 126 38.1
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 9.5e-12 73.9 119 42.0
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 1.2e-11 73.6 112 44.6
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.6e-11 73.2 118 40.7
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 2.1e-11 72.8 114 39.5
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.1e-11 72.8 127 40.9
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 2.8e-11 72.4 125 40.8
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.6e-11 72.0 115 41.7
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 3.6e-11 72.0 125 40.8
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 3.6e-11 72.0 118 44.1
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 3.6e-11 72.0 122 39.3
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 4.7e-11 71.6 119 34.5
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 4.7e-11 71.6 118 43.2
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 4.7e-11 71.6 116 42.2
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 6.2e-11 71.2 122 33.6
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 8.1e-11 70.9 117 41.0
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 8.1e-11 70.9 47 66.0
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 1.1e-10 70.5 66 51.5
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 1.4e-10 70.1 114 40.4
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 1.8e-10 69.7 133 36.8
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 1.8e-10 69.7 118 37.3
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 1.8e-10 69.7 120 40.8
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 1.8e-10 69.7 118 40.7
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 2.3e-10 69.3 86 47.7
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 2.3e-10 69.3 86 47.7
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 2.3e-10 69.3 119 35.3
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 2.3e-10 69.3 119 37.8
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 2.3e-10 69.3 119 37.8
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 2.3e-10 69.3 115 38.3
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.1e-10 68.9 118 39.8
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 3.1e-10 68.9 134 35.1
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 4.0e-10 68.6 118 38.1
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 4.0e-10 68.6 115 40.0
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 4.0e-10 68.6 115 39.1
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.0e-10 68.6 115 42.6
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 6.8e-10 67.8 130 37.7
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 6.8e-10 67.8 113 42.5
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 8.9e-10 67.4 115 40.9
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 8.9e-10 67.4 118 37.3
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 8.9e-10 67.4 84 45.2
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 8.9e-10 67.4 122 35.2
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 1.5e-09 66.6 122 36.1
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 1.5e-09 66.6 119 40.3
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.5e-09 66.6 119 37.0
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 2.0e-09 66.2 110 36.4
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 2.0e-09 66.2 120 35.8
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 3.4e-09 65.5 122 34.4
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 5.8e-09 64.7 40 67.5
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 5.8e-09 64.7 122 32.8
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 5.8e-09 64.7 114 36.8
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.8e-09 64.7 114 36.8
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.8e-09 64.7 114 36.8
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 5.8e-09 64.7 121 41.3
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 5.8e-09 64.7 116 36.2
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 7.5e-09 64.3 49 57.1
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 9.9e-09 63.9 82 43.9
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 9.9e-09 63.9 112 35.7
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 1.3e-08 63.5 42 61.9
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.3e-08 63.5 118 38.1
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-08 63.2 114 36.0
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 1.7e-08 63.2 98 35.7
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 1.7e-08 63.2 123 34.1
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.2e-08 62.8 114 36.0
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 2.9e-08 62.4 114 37.7
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 3.7e-08 62.0 125 34.4
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 3.7e-08 62.0 70 47.1
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 3.7e-08 62.0 115 35.7
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 3.7e-08 62.0 114 36.0
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 3.7e-08 62.0 114 37.7
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 3.7e-08 62.0 37 70.3
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 3.7e-08 62.0 114 40.4
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.9e-08 61.6 114 36.0
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 4.9e-08 61.6 56 50.0
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 4.9e-08 61.6 125 37.6
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 6.4e-08 61.2 113 30.1
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 6.4e-08 61.2 42 61.9
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 8.3e-08 60.8 82 43.9
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 8.3e-08 60.8 117 35.9
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 8.3e-08 60.8 114 36.8
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 8.3e-08 60.8 63 50.8
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.1e-07 60.5 83 44.6
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 1.4e-07 60.1 114 35.1
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 1.9e-07 59.7 118 38.1
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 2.4e-07 59.3 119 35.3
CDE08G1175 Ceratophyllum demersum HOM05D005367 ORTHO05D006328 5.4e-07 58.2 91 35.2
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 5.4e-07 58.2 113 33.6
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 7.1e-07 57.8 124 33.1
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 7.1e-07 57.8 116 37.1
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 7.1e-07 57.8 122 36.9
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 9.2e-07 57.4 115 34.8
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 9.2e-07 57.4 118 36.4
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 1.6e-06 56.6 116 36.2
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 1.6e-06 56.6 119 34.5
Zm00001eb429400 Zea mays HOM05D005367 ORTHO05D006328 2.1e-06 56.2 52 42.3
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.7e-06 55.8 116 37.9
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 2.7e-06 55.8 41 58.5
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 2.7e-06 55.8 42 54.8
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 4.6e-06 55.1 115 33.9
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 4.6e-06 55.1 119 38.7
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 4.6e-06 55.1 115 28.7
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 6.0e-06 54.7 115 28.7
CARHR000590 Cardamine hirsuta HOM05D005367 ORTHO05D006328 7.8e-06 54.3 31 64.5
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 7.8e-06 54.3 116 34.5


User provided reference genes

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