Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G292400 Prunus persica HOM05D006363 ORTHO05D007920 7.4e-110 400.6 207 100.0
RcHm_v2.0_Chr1g0376991 Rosa chinensis HOM05D006363 ORTHO05D007920 1.1e-92 343.6 207 87.0
FAN06G3284 Fragaria x ananassa HOM05D006363 ORTHO05D007920 4.1e-92 341.7 207 87.0
FAN06G3928 Fragaria x ananassa HOM05D006363 ORTHO05D007920 4.1e-92 341.7 207 87.0
FvH4_7g29240 Fragaria vesca HOM05D006363 ORTHO05D007920 5.3e-92 341.3 207 87.0
FAN10G0438 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.0e-91 339.3 207 86.0
FAN03G1027 Fragaria x ananassa HOM05D006363 ORTHO05D007920 2.5e-89 332.4 207 85.0
MD07G1266800 Malus domestica HOM05D006363 ORTHO05D007920 1.0e-87 327.0 197 84.8
MD01G1199000 Malus domestica HOM05D006363 ORTHO05D007920 3.0e-87 325.5 198 84.8
Cfa008303 Carpinus fangiana HOM05D006363 ORTHO05D007920 2.5e-86 322.4 200 81.0
FAN03G1282 Fragaria x ananassa HOM05D006363 ORTHO05D007920 5.7e-86 321.2 207 83.6
Haze_13734 Corylus avellana HOM05D006363 ORTHO05D007920 2.8e-85 318.9 200 81.0
Psat6g200600 Pisum sativum HOM05D006363 ORTHO05D007920 1.8e-84 316.2 205 80.5
QL09p014582 Quercus lobata HOM05D006363 ORTHO05D007920 3.1e-84 315.5 202 79.7
Sabra15G0151200 Salix brachista HOM05D006363 ORTHO05D007920 2.0e-83 312.8 203 78.8
TPR.G14326 Trifolium pratense HOM05D006363 ORTHO05D007920 2.0e-83 312.8 205 79.5
CiPaw.03G104700 Carya illinoinensis HOM05D006363 ORTHO05D007920 1.0e-82 310.5 198 79.8
TWI39G0139 Tripterygium wilfordii HOM05D006363 ORTHO05D007920 1.0e-82 310.5 203 77.8
Medtr1g100753 Medicago truncatula HOM05D006363 ORTHO05D007920 5.0e-82 308.1 205 77.6
Ciclev10007013m.g Citrus clementina HOM05D006363 ORTHO05D007920 6.5e-82 307.8 205 77.6
Phvul.007G068100 Phaseolus vulgaris HOM05D006363 ORTHO05D007920 7.2e-81 304.3 195 78.5
Potri.015G140600 Populus trichocarpa HOM05D006363 ORTHO05D007920 9.4e-81 303.9 200 78.5
Ca_10782_v3 Cicer arietinum L. HOM05D006363 ORTHO05D007920 1.2e-80 303.5 201 77.1
VMungo0720G1872 Vigna mungo HOM05D006363 ORTHO05D007920 4.7e-80 301.6 208 76.0
Glyma.20G157100 Glycine max HOM05D006363 ORTHO05D007920 1.0e-79 300.4 200 77.5
Thecc.03G174500 Theobroma cacao HOM05D006363 ORTHO05D007920 1.0e-79 300.4 201 79.6
Manes.07G111200 Manihot esculenta HOM05D006363 ORTHO05D007920 5.1e-79 298.1 203 76.8
Duzib205G1779 Durio zibethinus HOM05D006363 ORTHO05D007920 6.7e-79 297.7 203 77.8
Glyma.10G237500 Glycine max HOM05D006363 ORTHO05D007920 6.7e-79 297.7 201 77.1
Gorai.008G278600 Gossypium raimondii HOM05D006363 ORTHO05D007920 2.0e-78 296.2 201 79.1
LjContig00238g0019616 Lotus japonicus HOM05D006363 ORTHO05D007920 2.0e-78 296.2 206 75.2
Gohir.A12G258900 Gossypium hirsutum HOM05D006363 ORTHO05D007920 2.6e-78 295.8 201 79.1
Gohir.D12G260100 Gossypium hirsutum HOM05D006363 ORTHO05D007920 4.4e-78 295.0 201 78.6
Cpa.g.sc107.33 Carica papaya HOM05D006363 ORTHO05D007920 2.8e-77 292.4 203 72.4
PGR042G3170 Punica granatum HOM05D006363 ORTHO05D007920 6.3e-77 291.2 207 74.4
COL.COLO4_14288 Corchorus olitorius HOM05D006363 ORTHO05D007920 1.1e-76 290.4 204 76.5
Atru.chr1.482 Acer truncatum HOM05D006363 ORTHO05D007920 1.4e-76 290.0 199 75.4
Rhsim09G0197500 Rhododendron simsii HOM05D006363 ORTHO05D007920 4.1e-76 288.5 198 78.8
vmacro09843 Vaccinium macrocarpon HOM05D006363 ORTHO05D007920 1.2e-75 287.0 198 76.8
CsaV3_3G016980 Cucumis sativus L. HOM05D006363 ORTHO05D007920 2.6e-75 285.8 201 73.6
CANSAT21G2254 Cannabis sativa HOM05D006363 ORTHO05D007920 3.4e-75 285.4 204 76.5
MELO3C006895.2 Cucumis melo HOM05D006363 ORTHO05D007920 3.4e-75 285.4 201 74.1
THA.LOC104811988 Tarenaya hassleriana HOM05D006363 ORTHO05D007920 2.2e-74 282.7 205 71.7
EL10Ac3g05667 Beta vulgaris HOM05D006363 ORTHO05D007920 5.0e-74 281.6 196 75.0
CANSAT21G0627 Cannabis sativa HOM05D006363 ORTHO05D007920 5.0e-74 281.6 204 76.5
Thhalv10015742m.g Eutrema salsugineum HOM05D006363 ORTHO05D007920 8.5e-74 280.8 205 71.2
AUR62021214 Chenopodium quinoa HOM05D006363 ORTHO05D007920 1.4e-73 280.0 202 72.8
Sed0019375 Sechium edule HOM05D006363 ORTHO05D007920 2.5e-73 279.3 201 74.6
Carub.0008s1228 Capsella rubella HOM05D006363 ORTHO05D007920 3.2e-73 278.9 206 70.9
Aa31LG3G8570 Aethionema arabicum HOM05D006363 ORTHO05D007920 4.2e-73 278.5 198 73.7
AUR62016007 Chenopodium quinoa HOM05D006363 ORTHO05D007920 5.5e-73 278.1 195 74.4
AL8G26570 Arabidopsis lyrata HOM05D006363 ORTHO05D007920 9.4e-73 277.3 202 72.3
BcaC01g06171 Brassica carinata HOM05D006363 ORTHO05D007920 9.4e-73 277.3 198 72.2
CARHR265110 Cardamine hirsuta HOM05D006363 ORTHO05D007920 2.1e-72 276.2 208 69.2
BraA03t10870Z Brassica rapa HOM05D006363 ORTHO05D007920 3.6e-72 275.4 198 71.7
Peaxi162Scf00915g00018 Petunia axillaris HOM05D006363 ORTHO05D007920 3.6e-72 275.4 205 71.7
BolC3t14244H Brassica oleracea HOM05D006363 ORTHO05D007920 4.7e-72 275.0 198 71.2
C03p18470 Brassica napus HOM05D006363 ORTHO05D007920 1.0e-71 273.9 198 71.2
Dinv28459 Davidia involucrata HOM05D006363 ORTHO05D007920 1.4e-71 273.5 210 68.6
Eucgr.A02801 Eucalyptus grandis HOM05D006363 ORTHO05D007920 1.4e-71 273.5 210 69.5
BcaB01g04190 Brassica carinata HOM05D006363 ORTHO05D007920 2.3e-71 272.7 198 70.7
Lalb_Chr02g0140961 Lupinus albus HOM05D006363 ORTHO05D007920 2.3e-71 272.7 203 69.5
AT5G52190 Arabidopsis thaliana HOM05D006363 ORTHO05D007920 2.0e-70 269.6 209 67.9
Oeu062762.2 Olea europaea HOM05D006363 ORTHO05D007920 4.4e-70 268.5 207 69.1
Sp6g14440 Schrenkiella parvula HOM05D006363 ORTHO05D007920 1.7e-69 266.5 208 68.3
CSS0028509 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 2.2e-69 266.2 205 68.3
CSS0002932 Camellia sinensis var. sinensis HOM05D006363 ORTHO05D007920 2.4e-68 262.7 205 68.3
Cc03_g13850 Coffea canephora HOM05D006363 ORTHO05D007920 3.1e-68 262.3 203 68.5
Nitab4.5_0001508g0030 Nicotiana tabacum HOM05D006363 ORTHO05D007920 9.1e-68 260.8 205 68.3
PGSC0003DMG400014325 Solanum tuberosum HOM05D006363 ORTHO05D007920 9.1e-68 260.8 205 68.8
ECA238G0548 Erigeron canadensis HOM05D006363 ORTHO05D007920 2.6e-67 259.2 204 70.1
Migut.F01133 Erythranthe guttata HOM05D006363 ORTHO05D007920 3.5e-67 258.8 206 65.5
Lj8C25T12 Lonicera japonica HOM05D006363 ORTHO05D007920 5.9e-67 258.1 198 68.7
Solyc03g025990.1 Solanum lycopersicum HOM05D006363 ORTHO05D007920 5.9e-67 258.1 207 68.1
Lsat_1_v5_gn_2_133820 Lactuca sativa HOM05D006363 ORTHO05D007920 1.0e-66 257.3 206 66.5
Sopen03g004810 Solanum pennellii HOM05D006363 ORTHO05D007920 1.3e-66 256.9 207 67.6
Nn6g34197 Nelumbo nucifera HOM05D006363 ORTHO05D007920 2.2e-66 256.1 205 66.3
MSTRG.8448 Avicennia marina HOM05D006363 ORTHO05D007920 3.8e-66 255.4 205 66.3
GSVIVG01010552001 Vitis vinifera HOM05D006363 ORTHO05D007920 5.0e-66 255.0 204 66.2
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 8.5e-66 254.2 186 72.6
FAN01G1422 Fragaria x ananassa HOM05D006363 ORTHO05D007920 1.1e-65 253.8 207 69.1
Nitab4.5_0000716g0210 Nicotiana tabacum HOM05D006363 ORTHO05D007920 5.5e-65 251.5 205 66.8
HanXRQChr14g0462221 Helianthus annuus HOM05D006363 ORTHO05D007920 1.8e-63 246.5 205 65.4
PSO782G5704 Papaver somniferum HOM05D006363 ORTHO05D007920 3.0e-63 245.7 222 59.9
DCAR_018188 Daucus carota HOM05D006363 ORTHO05D007920 2.0e-62 243.0 205 63.9
Aqoxy7G00395 Aquilegia oxysepala HOM05D006363 ORTHO05D007920 4.4e-62 241.9 206 63.6
unitig_60.g25545 Utricularia gibba HOM05D006363 ORTHO05D007920 5.7e-62 241.5 202 66.3
CAN.G947.11 Capsicum annuum HOM05D006363 ORTHO05D007920 4.8e-61 238.4 195 67.7
PSO478G1739 Papaver somniferum HOM05D006363 ORTHO05D007920 1.1e-60 237.3 226 58.8
MBI04_g04731_MAGBIO Magnolia biondii HOM05D006363 ORTHO05D007920 1.6e-59 233.4 204 61.8
TAR375G0304 Trochodendron aralioides HOM05D006363 ORTHO05D007920 3.5e-59 232.3 191 63.9
CDE04G1845 Ceratophyllum demersum HOM05D006363 ORTHO05D007920 1.3e-53 213.8 185 62.2
Zm00001eb428810 Zea mays HOM05D006363 ORTHO05D007920 2.8e-53 212.6 215 58.1
Os04g0568600 Oryza sativa ssp. japonica HOM05D006363 ORTHO05D007920 1.6e-51 206.8 197 60.9
ATR0757G111 Amborella trichopoda HOM05D006363 ORTHO05D007920 1.0e-50 204.1 208 57.2
A03p15800 Brassica napus HOM05D006363 ORTHO05D007920 1.3e-50 203.8 144 74.3
HPP92_021110 Vanilla planifolia HOM05D006363 ORTHO05D007920 1.7e-50 203.4 184 61.4
SalBow2G2214 Salvia bowleyana HOM05D006363 ORTHO05D007920 1.2e-43 180.6 158 61.4
Sc25g0000440 Simmondsia chinensis HOM05D006363 ORTHO05D007920 4.5e-43 178.7 158 63.3
SEGI_31787 Sequoiadendron giganteum HOM05D006363 ORTHO05D007920 1.4e-39 167.2 202 50.0
Pp3c6_24270 Physcomitrium patens HOM05D006363 ORTHO05D007920 4.4e-38 162.2 214 45.8
A08p37210 Brassica napus HOM05D006363 ORTHO05D007920 1.3e-37 160.6 127 66.9
SMO367G0077 Selaginella moellendorffii HOM05D006363 ORTHO05D007920 4.1e-36 155.6 171 56.1
BcaC01g06168 Brassica carinata HOM05D006363 ORTHO05D007920 1.9e-28 130.2 92 69.6
BcaC06g36545 Brassica carinata HOM05D006363 ORTHO05D007920 1.8e-23 113.6 86 67.4
Mapoly0047s0087 Marchantia polymorpha HOM05D006363 ORTHO05D007920 1.1e-20 104.4 117 53.0
TPR.G33086 Trifolium pratense HOM05D006363 ORTHO05D007920 1.7e-18 97.1 61 85.2
Pp3c17_12800 Physcomitrium patens HOM05D006363 ORTHO05D007920 1.5e-17 94.0 314 27.4
BolC5t32613H Brassica oleracea HOM05D006363 ORTHO05D007920 2.1e-16 90.1 66 68.2
C05p38730 Brassica napus HOM05D006363 ORTHO05D007920 8.1e-16 88.2 66 66.7
Actinidia03116 Actinidia chinensis HOM05D006363 ORTHO05D007920 1.4e-15 87.4 106 51.9
TAR633G0106 Trochodendron aralioides HOM05D006363 ORTHO05D007920 2.6e-14 83.2 71 59.2
TAR633G1276 Trochodendron aralioides HOM05D006363 ORTHO05D007920 6.4e-13 78.6 64 62.5
TAR291G0005 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.4e-13 78.2 70 58.6
TAR375G0495 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.4e-13 78.2 70 58.6
TAR614G0003 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.4e-13 78.2 70 60.0
TAR624G1193 Trochodendron aralioides HOM05D006363 ORTHO05D007920 8.4e-13 78.2 70 58.6
BcaC01g06167 Brassica carinata HOM05D006363 ORTHO05D007920 1.9e-12 77.0 46 84.8
TAR629G0450 Trochodendron aralioides HOM05D006363 ORTHO05D007920 7.1e-12 75.1 70 57.1
TAR383G0849 Trochodendron aralioides HOM05D003653 ORTHO05D004249 1.2e-11 74.3 70 55.7
BcaC05g27871 Brassica carinata HOM05D006363 ORTHO05D007920 8.7e-10 68.2 103 46.6
A01p23910 Brassica napus HOM05D006363 ORTHO05D007920 5.8e-06 55.5 48 58.3
BraA01t02298Z Brassica rapa HOM05D006363 ORTHO05D007920 5.8e-06 55.5 48 58.3


User provided reference genes

Program Settings