Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 6.3e-137 490.7 242 100.0
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 1.6e-116 422.9 245 89.0
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 7.5e-114 414.1 244 84.8
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.2e-113 412.5 244 84.8
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 1.1e-112 410.2 244 84.4
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.9e-112 409.5 244 84.4
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 4.1e-112 408.3 244 84.8
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.0e-110 403.7 244 83.6
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 1.3e-110 403.3 238 83.6
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 3.0e-110 402.1 248 83.1
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 3.9e-110 401.7 237 84.0
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 5.0e-110 401.4 244 82.4
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.1e-109 400.2 248 82.7
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 1.9e-109 399.4 238 83.2
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 1.9e-109 399.4 248 80.6
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 9.5e-109 397.1 241 80.1
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 3.6e-108 395.2 242 81.4
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 5.2e-107 391.3 243 79.8
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 1.7e-105 386.3 243 80.2
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 4.9e-105 384.8 244 78.7
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 6.4e-105 384.4 237 80.2
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 8.3e-105 384.0 241 79.3
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 1.1e-104 383.6 240 78.8
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 9.2e-104 380.6 243 79.0
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 2.1e-103 379.4 245 77.1
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 2.7e-103 379.0 237 79.3
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 4.6e-103 378.3 244 77.9
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 6.0e-103 377.9 235 79.1
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 1.0e-102 377.1 244 77.9
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 1.7e-102 376.3 228 80.7
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 3.0e-102 375.6 245 76.3
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 1.5e-101 373.2 241 76.8
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 1.2e-100 370.2 230 78.3
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 1.6e-100 369.8 245 75.9
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 2.8e-100 369.0 239 77.0
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 2.8e-100 369.0 245 75.9
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 8.1e-100 367.5 238 76.5
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 1.1e-99 367.1 234 76.1
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 1.8e-99 366.3 245 74.3
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 8.9e-99 364.0 242 76.0
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 2.0e-98 362.8 236 74.6
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 2.6e-98 362.5 234 76.1
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 3.4e-98 362.1 236 76.7
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 4.4e-98 361.7 233 77.3
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 4.4e-98 361.7 242 74.8
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 5.8e-98 361.3 234 76.1
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 5.8e-98 361.3 243 74.5
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 1.7e-97 359.8 304 62.5
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 4.9e-97 358.2 247 73.7
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 8.3e-97 357.5 237 75.1
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 8.3e-97 357.5 247 73.3
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 8.3e-97 357.5 247 73.7
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 2.4e-96 355.9 237 74.7
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 3.2e-96 355.5 246 73.2
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 5.4e-96 354.8 237 74.3
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 7.1e-96 354.4 235 74.5
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 1.6e-95 353.2 234 74.4
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 2.1e-95 352.8 239 73.2
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 6.0e-95 351.3 230 76.5
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 1.0e-94 350.5 240 72.9
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 1.0e-94 350.5 237 74.3
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 2.3e-94 349.4 243 72.0
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 3.9e-94 348.6 241 73.0
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 6.6e-94 347.8 236 72.5
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 2.5e-93 345.9 233 73.0
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 9.6e-93 344.0 242 71.1
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 1.6e-92 343.2 233 72.5
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 2.1e-92 342.8 231 72.7
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 1.1e-91 340.5 240 72.9
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 5.2e-91 338.2 208 78.4
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 6.8e-91 337.8 236 70.8
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 6.8e-91 337.8 241 70.1
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 1.5e-90 336.7 218 76.6
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 2.0e-90 336.3 218 76.6
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 4.4e-90 335.1 199 81.9
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 5.8e-90 334.7 218 75.2
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 2.9e-89 332.4 236 70.3
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 2.9e-89 332.4 240 71.2
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 4.9e-89 331.6 211 76.8
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 4.9e-89 331.6 200 80.0
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 2.4e-88 329.3 234 71.4
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 1.2e-87 327.0 236 68.6
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 1.6e-87 326.6 237 69.6
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 1.6e-87 326.6 237 69.6
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 2.1e-87 326.2 234 68.8
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 4.6e-87 325.1 236 69.5
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 6.0e-87 324.7 235 71.1
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 7.8e-87 324.3 239 68.2
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 7.8e-87 324.3 239 68.2
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 5.1e-86 321.6 234 70.5
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 5.1e-86 321.6 229 71.2
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 6.6e-86 321.2 195 80.0
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 1.5e-85 320.1 206 75.2
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 2.5e-85 319.3 195 80.0
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 3.3e-85 318.9 238 68.1
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 2.4e-83 312.8 221 66.5
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 1.5e-82 310.1 233 67.4
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 1.4e-80 303.5 242 64.5
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 5.4e-80 301.6 218 68.3
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 2.7e-79 299.3 233 61.8
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 8.7e-78 294.3 183 78.7
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 7.3e-77 291.2 201 73.1
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 5.3e-75 285.0 238 62.2
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 3.4e-74 282.3 205 69.8
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 3.4e-74 282.3 196 70.9
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 1.3e-73 280.4 203 71.4
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 2.4e-72 276.2 194 67.5
Potri.012G133100 Populus trichocarpa HOM05D006286 ORTHO05D007741 1.5e-69 266.9 267 57.7
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 7.1e-64 248.1 227 54.6
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 2.3e-62 243.0 220 53.6
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 3.0e-62 242.7 144 80.6
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 9.6e-61 237.7 141 82.3
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 3.4e-58 229.2 186 59.7
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 2.5e-56 223.0 242 49.2
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 3.2e-56 222.6 225 52.9
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.2e-55 220.7 128 82.0
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 3.9e-54 215.7 193 57.5
SHI13825 Sapria himalayana HOM05D000350 ORTHO05D000228 7.0e-35 151.8 184 44.6
Actinidia13543 Actinidia chinensis HOM05D006286 ORTHO05D007741 2.6e-29 133.3 117 59.8
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 9.1e-27 124.8 206 37.9
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 3.8e-25 119.4 274 32.1
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 1.8e-22 110.5 202 34.2
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 3.4e-21 106.3 184 39.1
RcHm_v2.0_Chr1g0376261 Rosa chinensis HOM05D006286 ORTHO05D007741 7.2e-16 88.6 48 83.3
FvH4_2g14060 Fragaria vesca HOM05D006286 ORTHO05D007741 1.6e-15 87.4 61 67.2
Ah.14g078790 Amaranthus hybridus HOM05D006286 ORTHO05D007741 2.6e-13 80.1 49 75.5
SEGI_15131 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 9.5e-08 61.6 34 73.5
MCO03G036 Micromonas commoda HOM05D037152 ORTHO05D034124 1.6e-07 60.8 168 31.5


User provided reference genes

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