Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G282100 Prunus persica HOM05D008269 ORTHO05D010153 8.6e-76 287.0 150 100.0
FvH4_7g28161 Fragaria vesca HOM05D008269 ORTHO05D010153 8.1e-34 147.5 150 63.3
RcHm_v2.0_Chr1g0375111 Rosa chinensis HOM05D008269 ORTHO05D010153 1.5e-32 143.3 150 60.7
FAN03G1144 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.1e-27 127.1 134 61.9
FAN06G4038 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.6e-27 124.0 134 61.9
FAN01G0440 Fragaria x ananassa HOM05D003921 ORTHO05D004394 1.1e-22 110.5 127 56.7
FAN03G3435 Fragaria x ananassa HOM05D003921 ORTHO05D004394 4.2e-22 108.6 127 56.7
FAN10G0634 Fragaria x ananassa HOM05D003921 ORTHO05D004394 9.3e-22 107.5 127 54.3
Potri.015G131300 Populus trichocarpa HOM05D008269 ORTHO05D010153 1.4e-17 93.6 145 42.1
Manes.06G137900 Manihot esculenta HOM05D008269 ORTHO05D010153 2.4e-17 92.8 144 43.8
Prupe.2G282200 Prunus persica HOM05D008269 ORTHO05D010153 2.0e-16 89.7 151 43.7
Rhsim03G0171400 Rhododendron simsii HOM05D008269 ORTHO05D010153 2.2e-15 86.3 151 39.7
Thecc.03G161400 Theobroma cacao HOM05D008269 ORTHO05D010153 5.0e-15 85.1 144 41.7
Ciclev10006184m.g Citrus clementina HOM05D008269 ORTHO05D010153 1.1e-14 84.0 161 39.8
QL02p008773 Quercus lobata HOM05D008269 ORTHO05D010153 1.1e-14 84.0 150 39.3
VMungo0464G1635 Vigna mungo HOM05D008269 ORTHO05D010153 2.5e-14 82.8 163 37.4
Sabra12G0097300 Salix brachista HOM05D008269 ORTHO05D010153 3.2e-14 82.4 148 41.9
FAN10G2987 Fragaria x ananassa HOM05D008269 ORTHO05D010153 1.2e-13 80.5 144 41.0
Potri.012G129400 Populus trichocarpa HOM05D008269 ORTHO05D010153 1.2e-13 80.5 145 41.4
Haze_17962 Corylus avellana HOM05D008269 ORTHO05D010153 1.6e-13 80.1 145 40.0
Cfa018156 Carpinus fangiana HOM05D008269 ORTHO05D010153 6.1e-13 78.2 147 39.5
RcHm_v2.0_Chr1g0375121 Rosa chinensis HOM05D008269 ORTHO05D010153 1.0e-12 77.4 148 37.8
Phvul.004G127400 Phaseolus vulgaris HOM05D008269 ORTHO05D010153 1.4e-12 77.0 156 35.9
Atru.chr1.635 Acer truncatum HOM05D008269 ORTHO05D010153 3.0e-12 75.9 151 37.7
Cpa.g.sc3.272 Carica papaya HOM05D008269 ORTHO05D010153 3.9e-12 75.5 148 37.8
CiPaw.03G096800 Carya illinoinensis HOM05D008269 ORTHO05D010153 3.9e-12 75.5 149 36.9
Duzib084G0789 Durio zibethinus HOM05D008269 ORTHO05D010153 3.9e-12 75.5 144 39.6
Manes.02G153600 Manihot esculenta HOM05D008269 ORTHO05D010153 5.1e-12 75.1 142 37.3
Nn1g01219 Nelumbo nucifera HOM05D008269 ORTHO05D010153 6.7e-12 74.7 147 39.5
Atru.chr1.636 Acer truncatum HOM05D008269 ORTHO05D010153 1.1e-11 73.9 153 37.9
FvH4_7g28170 Fragaria vesca HOM05D008269 ORTHO05D010153 1.5e-11 73.6 148 39.2
CiPaw.04G062800 Carya illinoinensis HOM05D008269 ORTHO05D010153 1.9e-11 73.2 146 34.2
PGR047G0001 Punica granatum HOM05D008269 ORTHO05D010153 1.9e-11 73.2 144 39.6
TPR.G10665 Trifolium pratense HOM05D008269 ORTHO05D010153 3.1e-09 65.9 157 33.1
Nitab4.5_0002786g0070 Nicotiana tabacum HOM05D012743 ORTHO05D010153 4.1e-09 65.5 152 36.8
COL.COLO4_14179 Corchorus olitorius HOM05D003921 ORTHO05D004394 6.9e-09 64.7 150 35.3
Nn4g26411 Nelumbo nucifera HOM05D008269 ORTHO05D010153 3.4e-08 62.4 161 30.4
Peaxi162Scf00032g00022 Petunia axillaris HOM05D012743 ORTHO05D017764 3.4e-08 62.4 164 36.0
THA.LOC104821569 Tarenaya hassleriana HOM05D023982 ORTHO05D010153 5.9e-08 61.6 162 35.2
Eucgr.K03334 Eucalyptus grandis HOM05D008269 ORTHO05D010153 1.0e-07 60.8 149 35.6
FAN03G2753 Fragaria x ananassa HOM05D008269 ORTHO05D010153 1.0e-07 60.8 138 34.8
Glyma.16G204500 Glycine max HOM05D008269 ORTHO05D010153 1.3e-07 60.5 150 30.0
CANSAT21G0510 Cannabis sativa HOM05D008269 ORTHO05D010153 2.2e-07 59.7 153 33.3
Oeu021725.1 Olea europaea HOM05D012743 ORTHO05D010153 2.2e-07 59.7 161 34.2
Lalb_Chr19g0131321 Lupinus albus HOM05D008269 ORTHO05D010153 5.0e-07 58.5 162 31.5
Phvul.007G111700 Phaseolus vulgaris HOM05D008269 ORTHO05D010153 5.0e-07 58.5 153 34.0
Aqoxy7G00619 Aquilegia oxysepala HOM05D008269 ORTHO05D010153 6.5e-07 58.2 147 29.9
Glyma.20G212300 Glycine max HOM05D008269 ORTHO05D010153 6.5e-07 58.2 154 31.8
Dinv28535 Davidia involucrata HOM05D008269 ORTHO05D010153 8.5e-07 57.8 125 35.2
Migut.F00432 Erythranthe guttata HOM05D008269 ORTHO05D010153 1.1e-06 57.4 150 32.0
MSTRG.8421 Avicennia marina HOM05D008269 ORTHO05D010153 1.4e-06 57.0 146 34.9
Carub.0006s0609 Capsella rubella HOM05D023982 ORTHO05D010153 1.9e-06 56.6 160 33.8
Oeu022504.1 Olea europaea HOM05D008269 ORTHO05D010153 1.9e-06 56.6 144 34.0
C03p03500 Brassica napus HOM05D023982 ORTHO05D010153 2.5e-06 56.2 168 33.9
BolC3t12892H Brassica oleracea HOM05D023982 ORTHO05D010153 2.5e-06 56.2 168 33.9
MELO3C005418.2 Cucumis melo HOM05D032672 ORTHO05D010153 5.5e-06 55.1 148 31.8
Eucgr.K03333 Eucalyptus grandis HOM05D008269 ORTHO05D010153 5.5e-06 55.1 148 31.8
FAN06G2146 Fragaria x ananassa HOM05D003921 ORTHO05D004394 5.5e-06 55.1 201 30.8
Glyma.10G177800 Glycine max HOM05D008269 ORTHO05D010153 5.5e-06 55.1 157 34.4


User provided reference genes

Program Settings