Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 6.0e-129 464.2 229 100.0
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 4.3e-111 404.8 231 90.5
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 3.4e-108 395.2 231 86.1
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 4.3e-103 378.3 230 83.9
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 6.2e-102 374.4 230 83.5
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 3.5e-97 358.6 231 78.4
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 4.3e-95 351.7 229 76.4
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 5.3e-93 344.7 227 76.2
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 2.0e-92 342.8 227 77.5
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 5.9e-92 341.3 234 75.6
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 5.9e-92 341.3 235 75.3
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.3e-91 340.1 233 75.5
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 1.4e-90 336.7 233 74.2
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.9e-90 336.3 233 73.8
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 1.9e-90 336.3 233 74.7
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 5.5e-90 334.7 233 75.1
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.2e-89 333.6 227 74.0
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 1.2e-89 333.6 232 72.4
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 1.2e-89 333.6 229 75.5
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 2.1e-89 332.8 240 71.2
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 2.1e-89 332.8 234 73.1
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 4.6e-89 331.6 223 75.3
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 6.1e-89 331.3 234 72.6
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 1.4e-88 330.1 232 72.4
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 3.9e-88 328.6 232 72.8
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 3.9e-88 328.6 233 74.2
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 6.7e-88 327.8 232 72.8
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 1.5e-87 326.6 232 72.8
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 1.3e-86 323.6 231 72.3
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 4.8e-86 321.6 228 71.5
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 6.3e-86 321.2 229 72.9
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 8.2e-86 320.9 234 71.4
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 2.4e-85 319.3 232 71.6
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 1.2e-84 317.0 233 71.7
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 3.4e-84 315.5 233 72.1
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 4.5e-84 315.1 233 69.1
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.0e-83 313.9 229 69.4
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 1.0e-83 313.9 229 71.2
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 6.5e-83 311.2 209 76.6
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 6.5e-83 311.2 229 66.8
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.9e-82 309.7 229 66.4
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 2.5e-82 309.3 230 69.6
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 4.2e-82 308.5 231 68.4
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 2.3e-80 302.8 229 69.4
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 3.0e-80 302.4 227 66.1
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 8.8e-80 300.8 234 67.1
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 8.8e-80 300.8 231 67.5
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.5e-79 300.1 233 67.8
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 2.0e-79 299.7 211 73.0
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 2.0e-79 299.7 232 67.2
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 2.6e-79 299.3 233 67.0
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 3.3e-79 298.9 230 67.8
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 7.4e-79 297.7 234 66.7
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 2.8e-78 295.8 238 66.8
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 2.8e-78 295.8 231 67.1
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 2.8e-78 295.8 228 66.7
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 3.7e-78 295.4 228 65.4
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 6.3e-78 294.7 235 66.0
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 1.8e-77 293.1 234 65.0
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 2.4e-77 292.7 214 69.6
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 7.0e-77 291.2 228 66.2
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 1.5e-76 290.0 232 65.9
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 7.7e-76 287.7 231 64.5
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 7.7e-76 287.7 235 67.7
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 1.3e-75 287.0 232 67.2
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 2.2e-75 286.2 245 61.2
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 2.2e-75 286.2 227 66.1
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 8.5e-75 284.3 232 65.1
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 1.9e-74 283.1 228 64.5
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 1.9e-74 283.1 233 65.2
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 3.2e-74 282.3 239 64.0
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 4.2e-74 282.0 227 65.2
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.2e-74 282.0 227 65.2
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 5.5e-74 281.6 228 65.4
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 5.5e-74 281.6 235 66.0
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 7.2e-74 281.2 237 64.6
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 7.2e-74 281.2 232 65.5
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 7.2e-74 281.2 232 65.5
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 1.2e-73 280.4 234 65.0
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.7e-73 279.3 226 65.5
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 4.7e-73 278.5 245 60.8
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 1.4e-72 276.9 239 61.1
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 1.8e-72 276.6 237 62.0
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 3.0e-72 275.8 215 65.6
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 1.1e-71 273.9 209 65.1
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 2.6e-71 272.7 232 62.5
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 3.3e-71 272.3 228 63.2
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 9.7e-71 270.8 251 59.8
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 1.7e-70 270.0 239 62.8
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 2.2e-70 269.6 227 62.1
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 1.1e-69 267.3 228 62.3
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 1.6e-68 263.5 230 61.7
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 2.6e-68 262.7 275 54.9
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 4.2e-66 255.4 284 51.8
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 1.2e-65 253.8 211 62.6
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 1.6e-65 253.4 224 58.9
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 2.7e-65 252.7 225 61.3
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 8.0e-65 251.1 213 63.8
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 8.8e-64 247.7 179 70.4
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 1.7e-62 243.4 230 56.1
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 1.4e-61 240.4 214 62.1
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 2.2e-59 233.0 169 72.2
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.9e-58 229.9 220 57.7
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 1.6e-57 226.9 229 55.0
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 4.0e-56 222.2 235 51.5
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 2.2e-54 216.5 233 52.4
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 5.4e-53 211.8 153 67.3
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 1.5e-50 203.8 230 53.5
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 6.1e-49 198.4 265 45.7
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 1.1e-45 187.6 210 49.0
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.6e-44 183.7 228 49.1
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 3.5e-44 182.6 178 55.6
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 5.6e-42 175.3 232 44.0
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 9.5e-42 174.5 134 64.2
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 1.4e-40 170.6 222 45.0
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 4.0e-40 169.1 221 45.2
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 8.9e-40 167.9 141 64.5
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 1.1e-37 161.0 134 63.4
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 1.9e-37 160.2 213 46.9
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 3.5e-36 156.0 237 42.6
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 1.5e-34 150.6 94 75.5
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 3.1e-32 142.9 96 70.8
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 1.2e-31 141.0 123 62.6
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 4.1e-29 132.5 143 51.7
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 7.8e-28 128.3 95 69.5
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 2.5e-26 123.2 136 53.7
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 4.7e-25 119.0 98 64.3
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 2.2e-22 110.2 214 36.4
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 1.1e-21 107.8 134 52.2
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 2.1e-20 103.6 109 49.5
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 6.6e-19 98.6 112 54.5
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 2.5e-18 96.7 216 31.9
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.6e-17 94.0 78 62.8
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 1.6e-17 94.0 83 61.4
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.8e-17 93.2 136 42.6
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 3.4e-15 86.3 185 32.4
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 3.2e-13 79.7 91 52.7
DCAR_026119 Daucus carota HOM05D000323 ORTHO05D000201 5.4e-13 79.0 103 46.6
arahy.Tifrunner.gnm1.ann1.8PDC51 Arachis hypogaea HOM05D005662 ORTHO05D007004 3.0e-11 73.2 94 47.9
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 5.1e-11 72.4 56 60.7


User provided reference genes

Program Settings