Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G280700 Prunus persica HOM05D007220 ORTHO05D009058 2.9e-94 348.6 179 100.0
MD01G1184500 Malus domestica HOM05D007220 ORTHO05D009058 6.7e-43 177.9 134 78.4
Cfa008220 Carpinus fangiana HOM05D007220 ORTHO05D009058 2.9e-30 136.0 144 54.9
Haze_13838 Corylus avellana HOM05D007220 ORTHO05D009058 1.5e-29 133.7 144 54.2
RcHm_v2.0_Chr1g0374911 Rosa chinensis HOM05D007220 ORTHO05D009058 5.7e-26 121.7 124 59.7
FAN06G4318 Fragaria x ananassa HOM05D007220 ORTHO05D009058 2.2e-25 119.8 125 59.2
FAN03G0488 Fragaria x ananassa HOM05D007220 ORTHO05D009058 3.7e-25 119.0 126 57.9
FAN03G2818 Fragaria x ananassa HOM05D007220 ORTHO05D009058 3.7e-25 119.0 126 57.9
TWI39G1186 Tripterygium wilfordii HOM05D007220 ORTHO05D009058 1.1e-24 117.5 146 53.4
FvH4_7g27960 Fragaria vesca HOM05D007220 ORTHO05D009058 1.4e-24 117.1 125 58.4
FAN10G3220 Fragaria x ananassa HOM05D007220 ORTHO05D009058 1.8e-24 116.7 126 57.9
Manes.14G034000 Manihot esculenta HOM05D007220 ORTHO05D009058 3.1e-24 115.9 154 48.7
MELO3C006826.2 Cucumis melo HOM05D007220 ORTHO05D009058 1.6e-23 113.6 152 53.3
CsaV3_3G016270 Cucumis sativus L. HOM05D007220 ORTHO05D009058 2.0e-23 113.2 147 53.7
BcaC01g06128 Brassica carinata HOM05D007220 ORTHO05D009058 2.6e-23 112.8 141 53.2
C03p18980 Brassica napus HOM05D007220 ORTHO05D009058 2.6e-23 112.8 141 53.2
BolC3t14287H Brassica oleracea HOM05D007220 ORTHO05D009058 2.6e-23 112.8 141 53.2
BraA03t10902Z Brassica rapa HOM05D007220 ORTHO05D009058 5.9e-23 111.7 140 50.7
FAN01G2832 Fragaria x ananassa HOM05D007220 ORTHO05D009058 7.7e-23 111.3 126 55.6
ClCG05G007450 Citrullus lanatus HOM05D007220 ORTHO05D009058 1.7e-22 110.2 152 52.0
FAN06G0674 Fragaria x ananassa HOM05D007220 ORTHO05D009058 5.0e-22 108.6 126 54.8
CiPaw.04G061800 Carya illinoinensis HOM05D007220 ORTHO05D009058 1.5e-21 107.1 154 44.2
Duzib205G1715 Durio zibethinus HOM05D007220 ORTHO05D009058 4.2e-21 105.5 151 46.4
BcaB01g04168 Brassica carinata HOM05D007220 ORTHO05D009058 7.2e-21 104.8 140 49.3
Thecc.03G158900 Theobroma cacao HOM05D007220 ORTHO05D009058 9.4e-21 104.4 150 49.3
Sp6g13740 Schrenkiella parvula HOM05D007220 ORTHO05D009058 3.0e-19 99.4 140 46.4
AL8G25850 Arabidopsis lyrata HOM05D007220 ORTHO05D009058 4.0e-19 99.0 147 44.9
Sed0003033 Sechium edule HOM05D007220 ORTHO05D009058 2.0e-18 96.7 157 45.9
COL.COLO4_14153 Corchorus olitorius HOM05D007220 ORTHO05D009058 4.4e-18 95.5 150 46.0
QL09p019051 Quercus lobata HOM05D007220 ORTHO05D009058 5.7e-18 95.1 156 41.0
TAR629G2293 Trochodendron aralioides HOM05D007220 ORTHO05D009058 9.8e-18 94.4 180 39.4
AT5G51545 Arabidopsis thaliana HOM05D007220 ORTHO05D009058 1.3e-17 94.0 148 45.3
GSVIVG01018558001 Vitis vinifera HOM05D007220 ORTHO05D009058 1.7e-17 93.6 130 45.4
A03p16110 Brassica napus HOM05D007220 ORTHO05D009058 2.2e-17 93.2 138 46.4
Eucgr.A02878 Eucalyptus grandis HOM05D007220 ORTHO05D009058 2.2e-17 93.2 152 41.4
Cpa.g.sc3.292 Carica papaya HOM05D007220 ORTHO05D009058 4.8e-17 92.0 151 44.4
Carub.0008s1158 Capsella rubella HOM05D007220 ORTHO05D009058 1.1e-16 90.9 142 45.1
DCAR_009422 Daucus carota HOM05D007220 ORTHO05D009058 1.1e-16 90.9 146 41.1
DCAR_009423 Daucus carota HOM05D007220 ORTHO05D009058 1.1e-16 90.9 146 41.1
Dinv28549 Davidia involucrata HOM05D007220 ORTHO05D009058 3.1e-16 89.4 157 47.1
Ciclev10005924m.g Citrus clementina HOM05D007220 ORTHO05D009058 2.0e-15 86.7 154 41.6
Atru.chr1.664 Acer truncatum HOM05D007220 ORTHO05D009058 3.5e-15 85.9 150 41.3
THA.LOC104811513 Tarenaya hassleriana HOM05D007220 ORTHO05D009058 7.7e-15 84.7 144 46.5
Sabra15G0142900 Salix brachista HOM05D007220 ORTHO05D009058 2.2e-14 83.2 154 42.2
Potri.015G129600 Populus trichocarpa HOM05D007220 ORTHO05D009058 3.8e-14 82.4 152 42.1
Dinv22967 Davidia involucrata HOM05D007220 ORTHO05D009058 8.5e-14 81.3 160 43.8
CARHR264320 Cardamine hirsuta HOM05D007220 ORTHO05D009058 9.4e-13 77.8 142 39.4
PGR042G1708 Punica granatum HOM05D007220 ORTHO05D009058 1.2e-12 77.4 148 38.5
Cc02_g04040 Coffea canephora HOM05D007220 ORTHO05D009058 6.1e-12 75.1 168 36.3
Gohir.D07G043100 Gossypium hirsutum HOM05D007220 ORTHO05D009058 8.0e-12 74.7 56 64.3
Gorai.001G046100 Gossypium raimondii HOM05D007220 ORTHO05D009058 8.0e-12 74.7 56 64.3
Nn4g26358 Nelumbo nucifera HOM05D007220 ORTHO05D009058 1.0e-11 74.3 157 38.9
unitig_46.g18768 Utricularia gibba HOM05D007220 ORTHO05D009058 1.0e-11 74.3 126 41.3
Sc19g0001910 Simmondsia chinensis HOM05D007220 ORTHO05D009058 1.4e-11 73.9 142 43.0
vmacro09892 Vaccinium macrocarpon HOM05D007220 ORTHO05D009058 2.3e-11 73.2 150 38.7
MSTRG.27183 Avicennia marina HOM05D007220 ORTHO05D009058 4.0e-11 72.4 147 36.7
Thhalv10015015m.g Eutrema salsugineum HOM05D007220 ORTHO05D009058 5.2e-11 72.0 125 43.2
Glyma.09G232600 Glycine max HOM05D007220 ORTHO05D009058 5.2e-11 72.0 95 44.2
Actinidia25024 Actinidia chinensis HOM05D007220 ORTHO05D009058 8.8e-11 71.2 147 37.4
SalBow4G2286 Salvia bowleyana HOM05D007220 ORTHO05D009058 1.2e-10 70.9 149 38.9
Psat7g150000 Pisum sativum HOM05D007220 ORTHO05D009058 1.5e-10 70.5 144 40.3
SGA_v2.0_scaffold2G01175 Striga asiatica HOM05D007220 ORTHO05D009058 2.0e-10 70.1 148 39.2
Solyc03g083570.3 Solanum lycopersicum HOM05D007220 ORTHO05D009058 2.6e-10 69.7 140 37.1
Peaxi162Scf00241g00624 Petunia axillaris HOM05D007220 ORTHO05D009058 4.4e-10 68.9 143 39.2
arahy.Tifrunner.gnm1.ann1.0IXC5E Arachis hypogaea HOM05D007220 ORTHO05D009058 7.5e-10 68.2 56 58.9
arahy.Tifrunner.gnm1.ann1.83G6QR Arachis hypogaea HOM05D007220 ORTHO05D009058 7.5e-10 68.2 56 58.9
SGA_v2.0_scaffold486G52391 Striga asiatica HOM05D007220 ORTHO05D009058 1.3e-09 67.4 140 36.4
Gohir.A07G038900 Gossypium hirsutum HOM05D007220 ORTHO05D009058 1.7e-09 67.0 139 35.3
Lsat_1_v5_gn_8_9340 Lactuca sativa HOM05D007220 ORTHO05D009058 1.7e-09 67.0 137 39.4
Medtr4g035825 Medicago truncatula HOM05D007220 ORTHO05D009058 2.2e-09 66.6 140 36.4
Rhsim09G0192800 Rhododendron simsii HOM05D007220 ORTHO05D009058 2.8e-09 66.2 153 39.9
AUR62016183 Chenopodium quinoa HOM05D007220 ORTHO05D009058 3.7e-09 65.9 149 36.9
FAN17G2597 Fragaria x ananassa HOM05D007220 ORTHO05D009058 3.7e-09 65.9 114 41.2
Migut.F00451 Erythranthe guttata HOM05D007220 ORTHO05D009058 4.9e-09 65.5 56 57.1
Nitab4.5_0001548g0050 Nicotiana tabacum HOM05D007220 ORTHO05D009058 4.9e-09 65.5 132 40.9
EL10Ac3g05813 Beta vulgaris HOM05D007220 ORTHO05D009058 8.3e-09 64.7 158 38.6
PGSC0003DMG400023001 Solanum tuberosum HOM05D007220 ORTHO05D009058 1.1e-08 64.3 62 53.2
Aa31LG3G7960 Aethionema arabicum HOM05D007220 ORTHO05D009058 1.8e-08 63.5 140 37.9
Potri.012G128000 Populus trichocarpa HOM05D007220 ORTHO05D009058 2.4e-08 63.2 153 36.6
Lj3g0016008 Lotus japonicus HOM05D007220 ORTHO05D009058 5.4e-08 62.0 89 42.7
Ca_20051_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 9.1e-08 61.2 139 36.7
Ca_30916_v3 Cicer arietinum L. HOM05D007220 ORTHO05D009058 9.1e-08 61.2 139 36.7
HanXRQChr08g0223851 Helianthus annuus HOM05D007220 ORTHO05D009058 2.0e-07 60.1 132 34.8
CAN.G152.17 Capsicum annuum HOM05D007220 ORTHO05D009058 2.7e-07 59.7 56 51.8
Aqoxy7G00673 Aquilegia oxysepala HOM05D007220 ORTHO05D009058 3.5e-07 59.3 139 33.1
CDE09G0763 Ceratophyllum demersum HOM05D007220 ORTHO05D009058 3.5e-07 59.3 149 36.2
VMungo1127G0384 Vigna mungo HOM05D007220 ORTHO05D009058 1.3e-06 57.4 120 37.5
MBI12_g14970_MAGBIO Magnolia biondii HOM05D007220 ORTHO05D009058 1.7e-06 57.0 61 49.2
HanXRQChr04g0107801 Helianthus annuus HOM05D000901 ORTHO05D001160 2.3e-06 56.6 147 34.0
CSS0026352 Camellia sinensis var. sinensis HOM05D007220 ORTHO05D009058 3.8e-06 55.8 55 56.4
Phvul.011G004500 Phaseolus vulgaris HOM05D007220 ORTHO05D009058 5.0e-06 55.5 85 44.7
Ah.07g208070 Amaranthus hybridus HOM05D000130 ORTHO05D009058 6.6e-06 55.1 143 34.3


User provided reference genes

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