Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G279000 Prunus persica HOM05D000292 ORTHO05D000172 9.2e-41 169.9 90 100.0
Prupe.2G228500 Prunus persica HOM05D000292 ORTHO05D000172 1.3e-15 86.3 50 92.0
Prupe.6G291300 Prunus persica HOM05D000292 ORTHO05D000172 1.7e-15 85.9 50 92.0
Prupe.6G261800 Prunus persica HOM05D000292 ORTHO05D000172 3.4e-11 71.6 45 82.2
MD07G1190300 Malus domestica HOM05D000292 ORTHO05D000172 4.4e-11 71.2 53 73.6
TWI38G0035 Tripterygium wilfordii HOM05D000292 ORTHO05D000172 8.4e-10 67.0 45 77.8
Prupe.2G228400 Prunus persica HOM05D000292 ORTHO05D000172 4.2e-09 64.7 50 70.0
FAN10G0604 Fragaria x ananassa HOM05D000292 ORTHO05D000172 5.4e-09 64.3 46 73.9
FvH4_7g21270 Fragaria vesca HOM05D000292 ORTHO05D000172 7.1e-09 63.9 45 75.6
FvH4_7g22750 Fragaria vesca HOM05D000292 ORTHO05D000172 9.3e-09 63.5 46 71.7
FAN01G1249 Fragaria x ananassa HOM05D000292 ORTHO05D000172 1.2e-08 63.2 46 69.6
FAN01G2320 Fragaria x ananassa HOM05D000292 ORTHO05D000172 1.2e-08 63.2 46 69.6
arahy.Tifrunner.gnm1.ann1.9W2H9Q Arachis hypogaea HOM05D000292 ORTHO05D000172 1.6e-08 62.8 47 68.1
FvH4_7g22740 Fragaria vesca HOM05D000292 ORTHO05D000172 1.6e-08 62.8 46 69.6
FAN06G2100 Fragaria x ananassa HOM05D000292 ORTHO05D000172 1.6e-08 62.8 46 69.6
FAN06G4894 Fragaria x ananassa HOM05D000292 ORTHO05D000172 1.6e-08 62.8 46 69.6
FAN03G0351 Fragaria x ananassa HOM05D000292 ORTHO05D000172 2.1e-08 62.4 47 66.0
Cc00_g25390 Coffea canephora HOM05D000292 ORTHO05D000172 2.7e-08 62.0 50 70.0
FAN03G0479 Fragaria x ananassa HOM05D001370 ORTHO05D002518 3.5e-08 61.6 58 58.6
RcHm_v2.0_Chr1g0366041 Rosa chinensis HOM05D000292 ORTHO05D000172 3.5e-08 61.6 50 66.0
arahy.Tifrunner.gnm1.ann1.8XHA1T Arachis hypogaea HOM05D000292 ORTHO05D000172 4.6e-08 61.2 47 66.0
FAN10G0906 Fragaria x ananassa HOM05D000292 ORTHO05D000172 6.0e-08 60.8 72 55.6
arahy.Tifrunner.gnm1.ann1.HKUE12 Arachis hypogaea HOM05D000292 ORTHO05D000172 7.8e-08 60.5 56 53.6
arahy.Tifrunner.gnm1.ann1.S4KWA1 Arachis hypogaea HOM05D000292 ORTHO05D000172 7.8e-08 60.5 47 63.8
FvH4_7g21300 Fragaria vesca HOM05D000292 ORTHO05D000172 7.8e-08 60.5 50 64.0
Psat6g236960 Pisum sativum HOM05D000292 ORTHO05D000172 7.8e-08 60.5 51 60.8
Psat6g236920 Pisum sativum HOM05D000292 ORTHO05D000172 1.0e-07 60.1 50 62.0
Prupe.2G279300 Prunus persica HOM05D000292 ORTHO05D000172 1.0e-07 60.1 52 65.4
Prupe.6G198200 Prunus persica HOM05D000292 ORTHO05D000172 1.0e-07 60.1 50 66.0
Rhsim09G0158900 Rhododendron simsii HOM05D000292 ORTHO05D000172 1.0e-07 60.1 50 62.0
ECA238G1794 Erigeron canadensis HOM05D000292 ORTHO05D000172 1.3e-07 59.7 46 71.7
Psat6g237400 Pisum sativum HOM05D000292 ORTHO05D000172 1.3e-07 59.7 50 60.0
Rhsim09G0159500 Rhododendron simsii HOM05D000292 ORTHO05D000172 1.3e-07 59.7 50 62.0
TWI63G1189 Tripterygium wilfordii HOM05D000292 ORTHO05D000172 1.3e-07 59.7 45 66.7
GSVIVG01016636001 Vitis vinifera HOM05D000292 ORTHO05D000172 1.3e-07 59.7 45 68.9
Lsat_1_v5_gn_2_115780 Lactuca sativa HOM05D000292 ORTHO05D000172 1.7e-07 59.3 47 68.1
arahy.Tifrunner.gnm1.ann1.AVR3JD Arachis hypogaea HOM05D000292 ORTHO05D000172 2.3e-07 58.9 47 61.7
Lj5g0022453 Lotus japonicus HOM05D000292 ORTHO05D000172 2.3e-07 58.9 50 60.0
MD07G1190600 Malus domestica HOM05D000292 ORTHO05D000172 2.3e-07 58.9 45 66.7
Rhsim09G0159000 Rhododendron simsii HOM05D000292 ORTHO05D000172 2.3e-07 58.9 60 56.7
arahy.Tifrunner.gnm1.ann1.Y48MES Arachis hypogaea HOM05D000292 ORTHO05D000172 3.0e-07 58.5 47 63.8
EL10Ac2g04767 Beta vulgaris HOM05D000292 ORTHO05D000172 3.0e-07 58.5 48 62.5
Psat0s4423g0040 Pisum sativum HOM05D000292 ORTHO05D000172 3.0e-07 58.5 50 58.0
Rhsim09G0162900 Rhododendron simsii HOM05D000292 ORTHO05D000172 3.0e-07 58.5 50 64.0
MD07G1190400 Malus domestica HOM05D000292 ORTHO05D000172 3.9e-07 58.2 46 63.0
Rhsim09G0163000 Rhododendron simsii HOM05D000292 ORTHO05D000172 3.9e-07 58.2 52 59.6
RcHm_v2.0_Chr1g0365711 Rosa chinensis HOM05D000292 ORTHO05D000172 3.9e-07 58.2 47 61.7
Sc11g0007410 Simmondsia chinensis HOM05D000292 ORTHO05D000172 3.9e-07 58.2 45 62.2
TWI38G1749 Tripterygium wilfordii HOM05D000292 ORTHO05D000172 3.9e-07 58.2 51 66.7
Cc00_g34330 Coffea canephora HOM05D000292 ORTHO05D000172 5.1e-07 57.8 45 71.1
Cc02_g08420 Coffea canephora HOM05D000292 ORTHO05D000172 5.1e-07 57.8 45 71.1
Rhsim09G0162700 Rhododendron simsii HOM05D000292 ORTHO05D000172 5.1e-07 57.8 47 61.7
Sed0025277 Sechium edule HOM05D000292 ORTHO05D000172 5.1e-07 57.8 50 60.0
arahy.Tifrunner.gnm1.ann1.A62LL4 Arachis hypogaea HOM05D000292 ORTHO05D000172 6.6e-07 57.4 48 56.2
MSTRG.12340 Avicennia marina HOM05D000292 ORTHO05D000172 6.6e-07 57.4 44 68.2
MSTRG.12341 Avicennia marina HOM05D000292 ORTHO05D000172 6.6e-07 57.4 44 68.2
CSS0020135 Camellia sinensis var. sinensis HOM05D000292 ORTHO05D000172 6.6e-07 57.4 48 62.5
FvH4_7g21260 Fragaria vesca HOM05D000292 ORTHO05D000172 6.6e-07 57.4 43 67.4
Medtr1g115450 Medicago truncatula HOM05D000292 ORTHO05D000172 6.6e-07 57.4 47 61.7
Rhsim09G0161800 Rhododendron simsii HOM05D000292 ORTHO05D000172 6.6e-07 57.4 50 64.0
COL.COLO4_14888 Corchorus olitorius HOM05D000292 ORTHO05D000172 8.7e-07 57.0 50 64.0
FvH4_7g21340 Fragaria vesca HOM05D000292 ORTHO05D000172 8.7e-07 57.0 45 62.2
Medtr1g115455 Medicago truncatula HOM05D000292 ORTHO05D000172 8.7e-07 57.0 47 59.6
Medtr8g445860 Medicago truncatula HOM05D000292 ORTHO05D000172 8.7e-07 57.0 55 54.5
Prupe.2G228600 Prunus persica HOM05D000292 ORTHO05D000172 8.7e-07 57.0 43 69.8
RcHm_v2.0_Chr5g0044511 Rosa chinensis HOM05D000292 ORTHO05D000172 8.7e-07 57.0 46 65.2
Sc11g0007510 Simmondsia chinensis HOM05D000292 ORTHO05D000172 8.7e-07 57.0 45 62.2
SGA_v2.0_scaffold357G49809 Striga asiatica HOM05D000292 ORTHO05D000172 8.7e-07 57.0 53 60.4
arahy.Tifrunner.gnm1.ann1.4JF4QJ Arachis hypogaea HOM05D000292 ORTHO05D000172 1.1e-06 56.6 50 60.0
arahy.Tifrunner.gnm1.ann1.DM6910 Arachis hypogaea HOM05D000292 ORTHO05D000172 1.1e-06 56.6 50 56.0
Ca_11298_v3 Cicer arietinum L. HOM05D000292 ORTHO05D000172 1.1e-06 56.6 49 59.2
Ca_11299_v3 Cicer arietinum L. HOM05D000292 ORTHO05D000172 1.1e-06 56.6 47 59.6
COL.COLO4_10926 Corchorus olitorius HOM05D000292 ORTHO05D000172 1.1e-06 56.6 44 65.9
FAN21G2576 Fragaria x ananassa HOM05D000292 ORTHO05D000172 1.1e-06 56.6 44 65.9
Psat6g237440 Pisum sativum HOM05D000292 ORTHO05D000172 1.1e-06 56.6 50 56.0
QL08p058030 Quercus lobata HOM05D000292 ORTHO05D000172 1.1e-06 56.6 45 66.7
Rhsim09G0162000 Rhododendron simsii HOM05D000292 ORTHO05D000172 1.1e-06 56.6 50 60.0
Rhsim09G0162100 Rhododendron simsii HOM05D000292 ORTHO05D000172 1.1e-06 56.6 52 57.7
Rhsim09G0162600 Rhododendron simsii HOM05D000292 ORTHO05D000172 1.1e-06 56.6 47 61.7
TPR.G13997 Trifolium pratense HOM05D000292 ORTHO05D000172 1.1e-06 56.6 47 59.6
TPR.G39650 Trifolium pratense HOM05D000292 ORTHO05D000172 1.1e-06 56.6 47 59.6
arahy.Tifrunner.gnm1.ann1.E67C5B Arachis hypogaea HOM05D000292 ORTHO05D000172 1.5e-06 56.2 50 60.0
CANSAT64G2087 Cannabis sativa HOM05D000292 ORTHO05D000172 1.5e-06 56.2 46 63.0
AUR62012185 Chenopodium quinoa HOM05D000292 ORTHO05D000172 1.5e-06 56.2 46 60.9
Haze_17004 Corylus avellana HOM05D000292 ORTHO05D000172 1.5e-06 56.2 42 69.0
Lj5g0015149 Lotus japonicus HOM05D000292 ORTHO05D000172 1.5e-06 56.2 50 58.0
TPR.G14010 Trifolium pratense HOM05D000292 ORTHO05D000172 1.5e-06 56.2 52 53.8
COL.COLO4_14887 Corchorus olitorius HOM05D000292 ORTHO05D000172 1.9e-06 55.8 50 64.0
FAN11G1025 Fragaria x ananassa HOM05D000292 ORTHO05D000172 1.9e-06 55.8 44 63.6
Nitab4.5_0001048g0020 Nicotiana tabacum HOM05D000292 ORTHO05D000172 1.9e-06 55.8 50 58.0
Peaxi162Scf00013g00229 Petunia axillaris HOM05D000292 ORTHO05D000172 1.9e-06 55.8 47 59.6
Prupe.7G048700 Prunus persica HOM05D000292 ORTHO05D000172 1.9e-06 55.8 40 75.0
CANSAT78G0101 Cannabis sativa HOM05D000292 ORTHO05D000172 2.5e-06 55.5 51 64.7
Haze_03087 Corylus avellana HOM05D000292 ORTHO05D000172 2.5e-06 55.5 43 67.4
Haze_17009 Corylus avellana HOM05D000292 ORTHO05D000172 2.5e-06 55.5 42 69.0
Dinv31415 Davidia involucrata HOM05D000292 ORTHO05D000172 2.5e-06 55.5 45 64.4
Gohir.D10G220600 Gossypium hirsutum HOM05D000292 ORTHO05D000172 2.5e-06 55.5 45 64.4
Gorai.011G248900 Gossypium raimondii HOM05D000292 ORTHO05D000172 2.5e-06 55.5 45 64.4
Nitab4.5_0001048g0040 Nicotiana tabacum HOM05D000292 ORTHO05D000172 2.5e-06 55.5 50 58.0
Nitab4.5_0001048g0050 Nicotiana tabacum HOM05D000292 ORTHO05D000172 2.5e-06 55.5 50 58.0
Phvul.007G010400 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 2.5e-06 55.5 50 56.0
TPR.G14009 Trifolium pratense HOM05D000292 ORTHO05D000172 2.5e-06 55.5 47 57.4
arahy.Tifrunner.gnm1.ann1.QI34GE Arachis hypogaea HOM05D000292 ORTHO05D000172 3.3e-06 55.1 42 66.7
Dinv31413 Davidia involucrata HOM05D000292 ORTHO05D000172 3.3e-06 55.1 45 64.4
FvH4_3g24890 Fragaria vesca HOM05D000292 ORTHO05D000172 3.3e-06 55.1 45 64.4
Lj5g0007863 Lotus japonicus HOM05D000292 ORTHO05D000172 3.3e-06 55.1 47 57.4
Medtr1g115440 Medicago truncatula HOM05D000292 ORTHO05D000172 3.3e-06 55.1 53 60.4
Rhsim09G0161000 Rhododendron simsii HOM05D000292 ORTHO05D000172 3.3e-06 55.1 51 58.8
Rhsim09G0162800 Rhododendron simsii HOM05D000292 ORTHO05D000172 3.3e-06 55.1 50 60.0
TPR.G13987 Trifolium pratense HOM05D000292 ORTHO05D000172 3.3e-06 55.1 47 59.6
TPR.G26525 Trifolium pratense HOM05D000292 ORTHO05D000172 3.3e-06 55.1 47 59.6
TPR.G29163 Trifolium pratense HOM05D000292 ORTHO05D000172 3.3e-06 55.1 47 57.4
Atru.chr12.559 Acer truncatum HOM05D000292 ORTHO05D000172 4.3e-06 54.7 45 62.2
AUR62022821 Chenopodium quinoa HOM05D000292 ORTHO05D000172 4.3e-06 54.7 42 69.0
Haze_17003 Corylus avellana HOM05D000292 ORTHO05D000172 4.3e-06 54.7 45 64.4
Haze_17008 Corylus avellana HOM05D000292 ORTHO05D000172 4.3e-06 54.7 45 64.4
Dinv25965 Davidia involucrata HOM05D000292 ORTHO05D000172 4.3e-06 54.7 44 63.6
Dinv31412 Davidia involucrata HOM05D000292 ORTHO05D000172 4.3e-06 54.7 45 64.4
Lj5g0028199 Lotus japonicus HOM05D000292 ORTHO05D000172 4.3e-06 54.7 50 54.0
Medtr7g063690 Medicago truncatula HOM05D000292 ORTHO05D000172 4.3e-06 54.7 47 63.8
Phvul.007G010300 Phaseolus vulgaris HOM05D000292 ORTHO05D000172 4.3e-06 54.7 51 54.9
Psat6g236800 Pisum sativum HOM05D000292 ORTHO05D000172 4.3e-06 54.7 47 57.4
Psat6g237360 Pisum sativum HOM05D000292 ORTHO05D000172 4.3e-06 54.7 45 60.0
Rhsim09G0159200 Rhododendron simsii HOM05D000292 ORTHO05D000172 4.3e-06 54.7 50 58.0
Rhsim09G0162300 Rhododendron simsii HOM05D000292 ORTHO05D000172 4.3e-06 54.7 50 58.0
RcHm_v2.0_Chr1g0365721 Rosa chinensis HOM05D000292 ORTHO05D000172 4.3e-06 54.7 51 54.9
Sopen06g027100 Solanum pennellii HOM05D000292 ORTHO05D000172 4.3e-06 54.7 47 61.7
TWI15G1166 Tripterygium wilfordii HOM05D000292 ORTHO05D000172 4.3e-06 54.7 42 61.9
arahy.Tifrunner.gnm1.ann1.B7YI93 Arachis hypogaea HOM05D000292 ORTHO05D000172 5.6e-06 54.3 40 67.5
arahy.Tifrunner.gnm1.ann1.CL29KC Arachis hypogaea HOM05D000292 ORTHO05D000172 5.6e-06 54.3 40 67.5
CAN.G628.11 Capsicum annuum HOM05D000292 ORTHO05D000172 5.6e-06 54.3 58 55.2
CiPaw.02G180400 Carya illinoinensis HOM05D000292 ORTHO05D000172 5.6e-06 54.3 45 62.2
CiPaw.02G180500 Carya illinoinensis HOM05D000292 ORTHO05D000172 5.6e-06 54.3 45 62.2
AUR62012188 Chenopodium quinoa HOM05D000292 ORTHO05D000172 5.6e-06 54.3 48 58.3
COL.COLO4_10924 Corchorus olitorius HOM05D000292 ORTHO05D000172 5.6e-06 54.3 47 59.6
COL.COLO4_14884 Corchorus olitorius HOM05D000292 ORTHO05D000172 5.6e-06 54.3 47 59.6
DCAR_015216 Daucus carota HOM05D000292 ORTHO05D000172 5.6e-06 54.3 50 54.0
FvH4_3g24870 Fragaria vesca HOM05D000292 ORTHO05D000172 5.6e-06 54.3 44 63.6
FvH4_7g21610 Fragaria vesca HOM05D000292 ORTHO05D000172 5.6e-06 54.3 50 52.0
FAN01G3044 Fragaria x ananassa HOM05D000292 ORTHO05D000172 5.6e-06 54.3 56 51.8
Gohir.D10G220060 Gossypium hirsutum HOM05D000292 ORTHO05D000172 5.6e-06 54.3 50 58.0
Gorai.011G247300 Gossypium raimondii HOM05D000292 ORTHO05D000172 5.6e-06 54.3 50 58.0
Lj8A90T50 Lonicera japonica HOM05D000292 ORTHO05D000172 5.6e-06 54.3 50 60.0
Manes.10G038000 Manihot esculenta HOM05D000292 ORTHO05D000172 5.6e-06 54.3 51 56.9
Medtr7g100420 Medicago truncatula HOM05D000292 ORTHO05D000172 5.6e-06 54.3 50 54.0
Nitab4.5_0002352g0120 Nicotiana tabacum HOM05D000292 ORTHO05D000172 5.6e-06 54.3 50 56.0
Os01g0154100 Oryza sativa ssp. japonica HOM05D000292 ORTHO05D000172 5.6e-06 54.3 47 53.2
Psat6g236840 Pisum sativum HOM05D000292 ORTHO05D000172 5.6e-06 54.3 47 57.4
Rhsim09G0162400 Rhododendron simsii HOM05D000292 ORTHO05D000172 5.6e-06 54.3 64 48.4
PGSC0003DMG400033081 Solanum tuberosum HOM05D000292 ORTHO05D000172 5.6e-06 54.3 50 58.0
TPR.G16319 Trifolium pratense HOM05D000292 ORTHO05D000172 5.6e-06 54.3 72 43.1
TWI38G2330 Tripterygium wilfordii HOM05D000292 ORTHO05D000172 5.6e-06 54.3 45 64.4
vmacro03082 Vaccinium macrocarpon HOM05D000292 ORTHO05D000172 5.6e-06 54.3 47 53.2
VMungo0720G0702 Vigna mungo HOM05D000292 ORTHO05D000172 5.6e-06 54.3 47 57.4
arahy.Tifrunner.gnm1.ann1.3JRE7Y Arachis hypogaea HOM05D000292 ORTHO05D000172 7.3e-06 53.9 40 67.5
Cc02_g08430 Coffea canephora HOM05D000292 ORTHO05D000172 7.3e-06 53.9 41 70.7
Gohir.D10G219948 Gossypium hirsutum HOM05D000292 ORTHO05D000172 7.3e-06 53.9 50 56.0
Gorai.011G246900 Gossypium raimondii HOM05D000292 ORTHO05D000172 7.3e-06 53.9 50 56.0
Hma1.2p1_0402F.1_g145010 Hydrangea macrophylla HOM05D000292 ORTHO05D000172 7.3e-06 53.9 45 62.2
Prupe.2G228300 Prunus persica HOM05D000292 ORTHO05D000172 7.3e-06 53.9 37 70.3
Rhsim09G0161700 Rhododendron simsii HOM05D000292 ORTHO05D000172 7.3e-06 53.9 47 59.6
Rhsim09G0163200 Rhododendron simsii HOM05D000292 ORTHO05D000172 7.3e-06 53.9 47 57.4
SalBow3G3088 Salvia bowleyana HOM05D000292 ORTHO05D000172 7.3e-06 53.9 46 58.7
CANSAT78G0068 Cannabis sativa HOM05D000292 ORTHO05D000172 9.6e-06 53.5 46 58.7
CANSAT78G2067 Cannabis sativa HOM05D000292 ORTHO05D000172 9.6e-06 53.5 50 56.0
AUR62012186 Chenopodium quinoa HOM05D000292 ORTHO05D000172 9.6e-06 53.5 51 58.8
AUR62022822 Chenopodium quinoa HOM05D000292 ORTHO05D000172 9.6e-06 53.5 48 56.2
Dinv25967 Davidia involucrata HOM05D000292 ORTHO05D000172 9.6e-06 53.5 45 62.2
FvH4_7g21290 Fragaria vesca HOM05D000292 ORTHO05D000172 9.6e-06 53.5 50 60.0
FvH4_7g21330 Fragaria vesca HOM05D000292 ORTHO05D000172 9.6e-06 53.5 44 61.4
Os01g0153500 Oryza sativa ssp. japonica HOM05D000292 ORTHO05D000172 9.6e-06 53.5 46 56.5
Peaxi162Scf00013g00337 Petunia axillaris HOM05D000292 ORTHO05D000172 9.6e-06 53.5 45 62.2
Solyc06g069810.1 Solanum lycopersicum HOM05D000292 ORTHO05D000172 9.6e-06 53.5 47 61.7
TAR623G1106 Trochodendron aralioides HOM05D000292 ORTHO05D000172 9.6e-06 53.5 41 65.9
TAR623G1376 Trochodendron aralioides HOM05D000292 ORTHO05D000172 9.6e-06 53.5 41 65.9
VMungo0720G0032 Vigna mungo HOM05D000292 ORTHO05D000172 9.6e-06 53.5 47 55.3


User provided reference genes

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