Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1596.6 840 100.0
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1463.7 840 90.7
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1457.6 840 90.4
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1457.2 840 90.2
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1451.0 840 90.0
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1437.9 860 87.9
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1411.7 839 87.8
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1401.3 840 86.5
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1396.3 841 86.3
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1394.8 840 86.1
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1384.8 840 86.2
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1382.1 840 85.8
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1378.6 841 85.3
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1376.3 840 85.5
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1374.4 841 85.4
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1374.0 841 85.6
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1370.1 841 85.0
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1367.4 841 85.1
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1366.7 842 84.0
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1363.2 841 84.5
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1360.5 840 83.2
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1360.5 840 84.2
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1355.9 840 83.3
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1352.4 841 83.8
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1343.9 840 83.9
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1343.6 840 82.4
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1342.8 841 82.9
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1342.4 840 84.0
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1342.4 841 83.1
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1328.2 840 82.7
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1326.6 840 81.2
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1326.2 840 81.8
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1325.8 840 81.8
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1324.7 840 82.1
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1322.8 843 82.4
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1322.0 840 83.1
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1321.6 840 83.2
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1321.6 840 81.7
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1320.1 840 82.5
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1317.8 833 82.5
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1317.4 840 82.5
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1315.4 840 83.1
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1313.9 841 80.6
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1311.6 933 75.5
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1306.6 724 94.5
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1304.7 840 79.8
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1301.2 841 80.4
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1288.1 841 79.2
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1285.8 841 79.2
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1285.4 848 78.3
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1284.6 841 79.2
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1284.6 841 79.1
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1284.2 841 79.2
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1282.7 840 81.1
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1280.0 841 78.7
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1279.2 840 80.2
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1277.3 839 78.3
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1276.9 840 79.2
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1275.8 841 78.4
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1270.0 841 78.6
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1269.2 841 78.4
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1268.4 839 79.4
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1266.1 842 78.1
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1265.8 842 78.4
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1264.6 842 78.3
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1263.8 841 77.4
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1263.1 842 78.0
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1262.3 842 78.1
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1258.8 842 77.7
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1257.3 841 77.2
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1255.0 841 77.2
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1253.0 840 77.9
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1248.8 854 77.6
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1247.6 841 76.3
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1245.0 843 76.7
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1244.2 854 77.5
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1244.2 845 77.2
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1243.4 840 76.4
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1239.6 841 77.1
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1239.2 840 77.0
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1234.9 840 76.7
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1233.8 841 75.5
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1231.5 858 74.5
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1231.1 858 74.6
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1225.3 841 76.6
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1216.1 842 76.8
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1206.0 841 74.2
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1193.7 842 73.3
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1193.7 808 76.7
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1192.6 745 82.4
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1191.8 840 73.2
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1174.8 862 74.1
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1162.1 1001 63.8
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1156.4 858 71.1
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1146.0 840 71.8
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 0.0e+00 1113.2 842 68.9
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1085.5 838 70.9
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 4.0e-311 1071.2 685 81.3
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 4.1e-300 1034.6 724 73.9
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.6e-256 889.8 858 56.1
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 1.5e-254 883.2 857 56.4
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 2.4e-239 832.8 523 80.9
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 3.8e-237 825.5 546 77.3
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.5e-233 813.5 609 70.1
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 9.6e-233 810.8 512 85.0
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.2e-230 803.9 545 75.8
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 2.0e-230 803.1 842 52.4
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 2.5e-225 786.2 749 56.9
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.2e-219 767.3 617 68.2
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 1.3e-210 737.3 446 89.5
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 7.2e-204 714.9 428 88.1
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 2.2e-192 676.8 564 65.8
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 2.0e-190 670.2 903 44.6
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 5.9e-190 668.7 441 81.6
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 1.9e-156 557.4 397 72.5
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 5.6e-156 555.8 344 82.6
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 1.7e-149 534.3 397 72.8
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 7.8e-126 455.7 389 64.8
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 1.7e-117 427.9 342 65.8
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 1.1e-116 425.2 427 57.1
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 1.6e-115 421.4 294 76.5
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 5.1e-109 399.8 235 83.8
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 1.1e-106 392.1 235 81.7
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.3e-101 375.2 258 77.1
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 2.8e-99 367.5 866 31.8
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 5.9e-81 306.6 211 73.0
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 2.5e-71 274.6 861 27.4
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.4e-66 258.8 230 64.3
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 7.0e-66 256.5 278 55.8
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 4.0e-61 240.7 211 61.1
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 2.6e-60 238.0 289 48.8
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 7.7e-57 226.5 179 67.6
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 9.4e-55 219.5 210 64.3
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.4e-53 215.7 183 63.9
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 2.0e-49 201.8 122 79.5
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 1.7e-43 182.2 105 93.3
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 5.4e-42 177.2 104 82.7
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 7.0e-42 176.8 128 71.1
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 3.5e-41 174.5 104 81.7
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 1.8e-37 162.2 96 79.2
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 2.3e-37 161.8 96 81.2
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 5.0e-32 144.1 97 72.2
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 1.1e-31 142.9 233 39.9
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 1.5e-31 142.5 95 74.7
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 9.5e-31 139.8 95 73.7
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 4.7e-30 137.5 140 52.1
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 2.2e-27 128.6 87 83.9
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 4.9e-27 127.5 95 69.5
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 7.0e-26 123.6 142 50.0
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 8.6e-24 116.7 216 36.6
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 3.3e-23 114.8 215 38.1
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 4.7e-22 110.9 230 36.5
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 2.0e-20 105.5 82 68.3
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.0e-20 105.5 72 81.9
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 7.5e-20 103.6 90 63.3
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.9e-19 101.7 99 48.5
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 1.6e-14 85.9 133 48.1
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 4.4e-12 77.8 158 36.1
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 6.4e-11 73.9 97 47.4
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 6.0e-09 67.4 61 57.4
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 9.6e-07 60.1 67 46.3


User provided reference genes

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