Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G274000 Prunus persica HOM05D002866 ORTHO05D008706 2.0e-175 619.0 322 100.0
MD01G1178200 Malus domestica HOM05D002866 ORTHO05D008706 6.2e-164 580.9 322 90.1
MD07G1250400 Malus domestica HOM05D002866 ORTHO05D008706 4.4e-162 574.7 322 91.9
RcHm_v2.0_Chr1g0373901 Rosa chinensis HOM05D002866 ORTHO05D008706 3.2e-160 568.5 322 88.2
FvH4_7g27080 Fragaria vesca HOM05D002866 ORTHO05D008706 2.3e-158 562.4 322 89.1
FAN10G3812 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.3e-153 546.6 322 87.0
FAN06G0893 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.9e-152 542.7 334 82.6
CiPaw.07G185900 Carya illinoinensis HOM05D002866 ORTHO05D008706 4.3e-149 531.6 324 83.0
FAN06G0035 Fragaria x ananassa HOM05D002866 ORTHO05D008706 1.2e-143 513.5 322 82.9
QL09p028565 Quercus lobata HOM05D002866 ORTHO05D008706 1.2e-143 513.5 323 80.2
FAN01G3021 Fragaria x ananassa HOM05D002866 ORTHO05D008706 6.6e-142 507.7 355 75.2
Cfa013555 Carpinus fangiana HOM05D002866 ORTHO05D008706 3.3e-141 505.4 322 78.9
CANSAT56G0863 Cannabis sativa HOM05D002866 ORTHO05D008706 9.6e-141 503.8 324 77.8
Atru.chr1.857 Acer truncatum HOM05D002866 ORTHO05D008706 1.6e-140 503.1 322 77.6
Potri.004G233400 Populus trichocarpa HOM05D002866 ORTHO05D008706 5.3e-139 498.0 322 77.0
CiPaw.08G040800 Carya illinoinensis HOM05D002866 ORTHO05D008706 1.5e-138 496.5 331 77.0
TAR629G0107 Trochodendron aralioides HOM05D002866 ORTHO05D008706 2.6e-138 495.7 328 75.3
Haze_22176 Corylus avellana HOM05D002866 ORTHO05D008706 6.4e-137 491.1 322 78.0
FAN03G0071 Fragaria x ananassa HOM05D002866 ORTHO05D008706 2.4e-136 489.2 322 81.1
Duzib205G1859 Durio zibethinus HOM05D002866 ORTHO05D008706 5.4e-136 488.0 324 75.3
Eucgr.K00134 Eucalyptus grandis HOM05D002866 ORTHO05D008706 7.1e-136 487.6 322 74.8
COL.COLO4_14065 Corchorus olitorius HOM05D002866 ORTHO05D008706 9.3e-136 487.3 322 75.8
TWI39G0340 Tripterygium wilfordii HOM05D002866 ORTHO05D008706 1.2e-135 486.9 322 74.8
Gohir.D12G199800 Gossypium hirsutum HOM05D002866 ORTHO05D008706 3.5e-135 485.3 324 75.3
Gohir.A12G197200 Gossypium hirsutum HOM05D002866 ORTHO05D008706 6.0e-135 484.6 324 75.0
CsaV3_4G004120 Cucumis sativus L. HOM05D002866 ORTHO05D008706 7.9e-135 484.2 325 74.5
Dinv16857 Davidia involucrata HOM05D002866 ORTHO05D000096 3.0e-134 482.3 324 74.7
MELO3C017654.2 Cucumis melo HOM05D002866 ORTHO05D008706 1.5e-133 479.9 325 73.2
Sed0026429 Sechium edule HOM05D002866 ORTHO05D008706 1.5e-133 479.9 325 73.8
Thecc.03G150500 Theobroma cacao HOM05D002866 ORTHO05D008706 1.9e-133 479.6 322 74.5
ClCG07G016890 Citrullus lanatus HOM05D002866 ORTHO05D008706 2.5e-133 479.2 344 71.2
Glyma.12G241300 Glycine max HOM05D002866 ORTHO05D008706 3.3e-133 478.8 325 74.5
TAR636G1476 Trochodendron aralioides HOM05D002866 ORTHO05D008706 9.6e-133 477.2 326 73.9
TPR.G4977 Trifolium pratense HOM05D002866 ORTHO05D008706 1.6e-132 476.5 321 74.5
Manes.06G132500 Manihot esculenta HOM05D002866 ORTHO05D008706 2.8e-132 475.7 328 72.9
arahy.Tifrunner.gnm1.ann1.J95VX3 Arachis hypogaea HOM05D002866 ORTHO05D008706 3.7e-132 475.3 348 69.8
Ca_19791_v3 Cicer arietinum L. HOM05D002866 ORTHO05D008706 4.8e-132 474.9 324 73.5
Ciclev10005197m.g Citrus clementina HOM05D002866 ORTHO05D008706 1.4e-131 473.4 322 73.6
VMungo1127G0600 Vigna mungo HOM05D002866 ORTHO05D008706 3.1e-131 472.2 325 73.5
Aqoxy3G02809 Aquilegia oxysepala HOM05D002866 ORTHO05D008706 5.3e-131 471.5 328 71.3
CSS0019630 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 6.9e-131 471.1 326 72.4
arahy.Tifrunner.gnm1.ann1.E5894Z Arachis hypogaea HOM05D002866 ORTHO05D008706 9.0e-131 470.7 354 68.6
CSS0049284 Camellia sinensis var. sinensis HOM05D002866 ORTHO05D008706 1.2e-130 470.3 325 72.3
Gorai.008G215000 Gossypium raimondii HOM05D002866 ORTHO05D008706 1.2e-130 470.3 352 69.3
Medtr4g029530 Medicago truncatula HOM05D002866 ORTHO05D008706 1.2e-130 470.3 322 72.7
Oeu021695.1 Olea europaea HOM05D002866 ORTHO05D008706 1.2e-130 470.3 322 71.7
Psat7g229240 Pisum sativum HOM05D002866 ORTHO05D008706 1.5e-130 469.9 322 72.4
Glyma.09G001400 Glycine max HOM05D002866 ORTHO05D008706 3.4e-130 468.8 325 73.8
PGR142G0955 Punica granatum HOM05D002866 ORTHO05D008706 5.8e-130 468.0 320 72.8
AL8G38230 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 1.7e-129 466.5 324 73.5
Lalb_Chr03g0033851 Lupinus albus HOM05D002866 ORTHO05D008706 2.9e-129 465.7 323 73.1
PGSC0003DMG400018852 Solanum tuberosum HOM05D002866 ORTHO05D008706 3.8e-129 465.3 322 70.5
Lalb_Chr01g0008171 Lupinus albus HOM05D002866 ORTHO05D008706 6.5e-129 464.5 325 72.3
THA.LOC104819416 Tarenaya hassleriana HOM05D002866 ORTHO05D008706 1.1e-128 463.8 324 72.2
BraA03t13839Z Brassica rapa HOM05D002866 ORTHO05D008706 1.9e-128 463.0 324 72.2
Sp2g24730 Schrenkiella parvula HOM05D002866 ORTHO05D008706 1.9e-128 463.0 324 72.2
Thhalv10005440m.g Eutrema salsugineum HOM05D002866 ORTHO05D008706 3.2e-128 462.2 324 71.9
A09p07320 Brassica napus HOM05D002866 ORTHO05D008706 4.2e-128 461.8 325 72.9
Solyc03g093430.3 Solanum lycopersicum HOM05D002866 ORTHO05D008706 4.2e-128 461.8 322 70.8
A03p47120 Brassica napus HOM05D002866 ORTHO05D008929 7.1e-128 461.1 322 72.0
MSTRG.135 Avicennia marina HOM05D002866 ORTHO05D008706 9.3e-128 460.7 322 69.9
BraA09t36387Z Brassica rapa HOM05D002866 ORTHO05D008706 2.1e-127 459.5 325 72.6
Carub.0008s2222 Capsella rubella HOM05D002866 ORTHO05D008706 2.1e-127 459.5 324 72.2
CAN.G485.11 Capsicum annuum HOM05D002866 ORTHO05D008706 3.5e-127 458.8 323 69.7
Nitab4.5_0002346g0030 Nicotiana tabacum HOM05D002866 ORTHO05D008706 3.5e-127 458.8 322 70.5
BcaNung01432 Brassica carinata HOM05D002866 ORTHO05D008706 4.6e-127 458.4 324 71.6
HanXRQChr05g0139511 Helianthus annuus HOM05D002866 ORTHO05D008706 7.9e-127 457.6 323 70.3
Lj3g0011743 Lotus japonicus HOM05D002866 ORTHO05D008706 7.9e-127 457.6 323 72.8
BcaC04g23445 Brassica carinata HOM05D002866 ORTHO05D008706 3.0e-126 455.7 325 71.4
C07p45230 Brassica napus HOM05D002866 ORTHO05D008929 3.0e-126 455.7 320 71.9
C09p08260 Brassica napus HOM05D002866 ORTHO05D008706 5.1e-126 454.9 325 71.1
BolC9t53736H Brassica oleracea HOM05D002866 ORTHO05D008706 5.1e-126 454.9 325 71.1
CARHR275300 Cardamine hirsuta HOM05D002866 ORTHO05D008706 5.1e-126 454.9 324 71.3
Nn6g33864 Nelumbo nucifera HOM05D002866 ORTHO05D008706 1.9e-125 453.0 328 70.1
Sabra01G0178500 Salix brachista HOM05D002866 ORTHO05D008706 3.3e-125 452.2 377 63.9
Dinv06581 Davidia involucrata HOM05D002866 ORTHO05D008706 9.6e-125 450.7 335 69.6
Lsat_1_v5_gn_8_9940 Lactuca sativa HOM05D002866 ORTHO05D008706 1.3e-124 450.3 322 68.9
BolC7t45046H Brassica oleracea HOM05D002866 ORTHO05D008929 1.6e-124 449.9 325 70.8
Rhsim03G0163000 Rhododendron simsii HOM05D002866 ORTHO05D008706 4.8e-124 448.4 375 63.5
Cc02_g04580 Coffea canephora HOM05D002866 ORTHO05D008706 6.3e-124 448.0 323 70.0
Nitab4.5_0001267g0040 Nicotiana tabacum HOM05D002866 ORTHO05D008706 1.1e-123 447.2 322 69.3
vmacro22347 Vaccinium macrocarpon HOM05D002866 ORTHO05D008706 1.4e-123 446.8 320 71.2
Lj1A977T67 Lonicera japonica HOM05D002866 ORTHO05D008706 9.0e-123 444.1 375 63.2
Peaxi162Scf00271g00837 Petunia axillaris HOM05D002866 ORTHO05D008706 4.5e-122 441.8 322 68.9
Migut.F00510 Erythranthe guttata HOM05D002866 ORTHO05D008706 2.2e-121 439.5 320 67.8
EL10Ac3g05867 Beta vulgaris HOM05D002866 ORTHO05D008706 2.9e-121 439.1 326 67.5
Cpa.g.sc13.273 Carica papaya HOM05D002866 ORTHO05D008706 5.0e-121 438.3 301 74.1
Ah.07g207580 Amaranthus hybridus HOM05D002866 ORTHO05D008706 5.5e-120 434.9 332 65.7
Aa31LG11G1890 Aethionema arabicum HOM05D002866 ORTHO05D008706 9.3e-120 434.1 341 66.9
SGA_v2.0_scaffold60G20804 Striga asiatica HOM05D006112 ORTHO05D000096 7.9e-119 431.0 346 63.6
PSO063G2361 Papaver somniferum HOM05D002866 ORTHO05D008706 3.9e-118 428.7 335 64.8
MBI04_g34101_MAGBIO Magnolia biondii HOM05D002866 ORTHO05D008706 9.7e-117 424.1 333 67.0
unitig_0.g267 Utricularia gibba HOM05D002866 ORTHO05D008706 1.5e-114 416.8 323 64.1
Sopen03g024260 Solanum pennellii HOM05D002866 ORTHO05D008706 2.9e-113 412.5 274 73.0
Eucgr.A02912 Eucalyptus grandis HOM05D002866 ORTHO05D008706 1.1e-112 410.6 320 65.0
CDE02G3129 Ceratophyllum demersum HOM05D002866 ORTHO05D008706 2.2e-108 396.4 324 63.9
Os07g0486500 Oryza sativa ssp. japonica HOM05D002866 ORTHO05D008706 4.8e-108 395.2 325 61.5
Hund27168 Selenicereus undatus HOM05D002866 ORTHO05D008706 1.8e-107 393.3 403 52.9
ATR0057G110 Amborella trichopoda HOM05D002866 ORTHO05D008706 4.1e-99 365.5 355 57.5
HPP92_007440 Vanilla planifolia HOM05D002866 ORTHO05D008706 4.5e-98 362.1 337 57.3
AUR62015444 Chenopodium quinoa HOM05D002866 ORTHO05D008706 2.5e-96 356.3 327 58.7
Actinidia13600 Actinidia chinensis HOM05D000164 ORTHO05D000096 3.2e-96 355.9 219 83.1
AUR62002232 Chenopodium quinoa HOM05D002866 ORTHO05D008706 7.2e-96 354.8 325 57.2
AT5G61530 Arabidopsis thaliana HOM05D002866 ORTHO05D008706 1.2e-95 354.0 222 80.6
Zm00001eb321610 Zea mays HOM05D002866 ORTHO05D008706 6.3e-92 341.7 329 55.0
AL6G41360 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 2.4e-67 260.0 158 81.0
AL4G20970 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 5.9e-66 255.4 158 80.4
Zm00001eb105130 Zea mays HOM05D002866 ORTHO05D008706 1.3e-65 254.2 157 76.4
AL7G45270 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 6.6e-65 251.9 161 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2292 Anthoceros agrestis HOM05D002866 ORTHO05D008706 1.9e-59 233.8 366 40.2
AL9U10640 Arabidopsis lyrata HOM05D002866 ORTHO05D008706 3.1e-54 216.5 161 69.6
Mapoly0101s0019 Marchantia polymorpha HOM05D002866 ORTHO05D008706 4.4e-53 212.6 403 35.0
GSVIVG01032279001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.3e-52 211.1 148 71.6
CBR_g12377 Chara braunii HOM05D002866 ORTHO05D008706 3.7e-52 209.5 350 39.7
SEGI_37372 Sequoiadendron giganteum HOM05D002866 ORTHO05D008706 3.4e-45 186.4 140 62.9
GSVIVG01032275001 Vitis vinifera HOM05D002866 ORTHO05D008706 2.9e-44 183.3 129 66.7
GSVIVG01005702001 Vitis vinifera HOM05D002866 ORTHO05D008706 1.1e-40 171.4 126 65.9
ECA233G4879 Erigeron canadensis HOM05D000383 ORTHO05D000730 3.5e-26 123.2 102 53.9
Oeu031440.1 Olea europaea HOM05D002866 ORTHO05D008706 7.4e-24 115.5 103 51.5
GSVIVG01032273001 Vitis vinifera HOM05D002866 ORTHO05D008706 4.9e-12 76.3 58 62.1
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 3.2e-11 73.6 163 32.5
Oeu017777.1 Olea europaea HOM05D002866 ORTHO05D008706 3.5e-10 70.1 67 55.2
GSVIVG01006058001 Vitis vinifera HOM05D002866 ORTHO05D441252 7.9e-10 68.9 39 87.2
GSVIVG01005989001 Vitis vinifera HOM05D002866 ORTHO05D440186 1.8e-09 67.8 39 84.6
BcaNung07329 Brassica carinata HOM05D002866 ORTHO05D008706 1.1e-06 58.5 31 87.1


User provided reference genes

Program Settings