Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 4.3e-164 581.3 291 100.0
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 2.1e-142 509.2 289 86.5
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 3.6e-139 498.4 289 85.5
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 1.1e-122 443.7 290 77.2
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 1.4e-122 443.4 290 76.9
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 2.6e-121 439.1 280 78.2
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 9.3e-119 430.6 284 73.2
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 1.2e-118 430.3 283 74.6
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 1.6e-118 429.9 292 73.3
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 2.3e-117 426.0 284 74.6
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 3.3e-116 422.2 286 71.0
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 7.4e-116 421.0 286 71.0
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 7.4e-116 421.0 280 73.2
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 2.8e-115 419.1 284 72.9
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 1.4e-114 416.8 288 71.2
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 2.4e-114 416.0 288 71.5
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 1.5e-113 413.3 282 73.4
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 3.4e-113 412.1 281 72.2
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 1.3e-112 410.2 288 69.8
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 1.3e-112 410.2 282 73.8
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 1.3e-112 410.2 283 72.8
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 2.2e-112 409.5 280 72.1
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 6.5e-112 407.9 286 69.9
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 8.5e-112 407.5 290 69.7
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.1e-111 407.1 273 75.5
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 1.4e-111 406.8 288 69.4
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 1.9e-111 406.4 253 78.7
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 3.2e-111 405.6 288 69.4
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 1.6e-110 403.3 283 71.4
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 7.9e-110 401.0 287 70.7
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 1.8e-109 399.8 279 69.5
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 3.9e-109 398.7 269 72.1
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 6.7e-109 397.9 279 69.2
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 7.4e-108 394.4 289 69.6
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 1.3e-107 393.7 282 69.5
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 1.3e-107 393.7 282 69.1
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.3e-107 393.7 291 69.1
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 2.2e-107 392.9 287 69.7
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 3.7e-107 392.1 287 68.6
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 4.8e-107 391.7 292 67.8
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 4.8e-107 391.7 292 70.2
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.1e-106 390.6 291 68.7
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.8e-106 389.8 283 69.3
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 6.9e-106 387.9 299 64.9
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 2.0e-105 386.3 250 76.8
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 7.7e-105 384.4 287 66.9
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.1e-103 380.6 250 75.6
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.1e-103 380.6 264 72.0
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 1.9e-103 379.8 283 68.2
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 2.5e-103 379.4 223 83.0
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 4.2e-103 378.6 280 67.1
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 7.2e-103 377.9 282 65.6
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 7.2e-103 377.9 283 66.4
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.6e-102 376.7 291 66.3
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.6e-102 376.7 287 65.5
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 2.7e-102 375.9 249 73.5
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 4.7e-102 375.2 284 65.1
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 6.1e-102 374.8 291 67.7
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 6.1e-102 374.8 284 66.9
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 6.1e-102 374.8 284 61.6
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.0e-101 374.0 289 66.1
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 2.3e-101 372.9 282 66.0
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 3.0e-101 372.5 283 66.4
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 5.1e-101 371.7 282 66.3
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 6.7e-101 371.3 282 65.6
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 8.8e-101 370.9 289 64.7
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 1.5e-100 370.2 287 65.9
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 9.7e-100 367.5 280 64.6
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 1.3e-99 367.1 314 60.5
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 1.7e-99 366.7 279 64.9
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 1.4e-98 363.6 282 64.5
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 4.1e-98 362.1 288 66.0
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 1.5e-97 360.1 286 66.4
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 3.5e-97 359.0 255 69.4
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 7.7e-97 357.8 286 58.7
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 1.0e-96 357.5 272 64.3
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 1.0e-96 357.5 339 58.1
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.9e-95 353.2 249 69.5
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 5.5e-95 351.7 285 63.5
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 1.6e-94 350.1 252 70.2
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 2.7e-94 349.4 218 75.2
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 6.1e-94 348.2 228 72.8
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 2.3e-93 346.3 216 73.6
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 2.0e-92 343.2 249 67.9
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.3e-91 340.5 225 72.9
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 1.7e-91 340.1 249 66.7
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 8.2e-91 337.8 232 68.5
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 5.3e-90 335.1 262 64.5
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 9.1e-90 334.3 227 70.9
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.6e-89 333.6 224 68.3
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 3.5e-89 332.4 287 58.2
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 3.5e-89 332.4 308 57.5
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 4.2e-87 325.5 289 56.1
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 1.2e-86 323.9 223 68.2
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.2e-86 323.9 324 54.3
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.6e-86 322.4 333 52.6
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 4.0e-85 318.9 219 70.8
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 3.3e-84 315.8 249 63.9
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 3.3e-84 315.8 249 63.9
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 2.2e-83 313.2 189 78.3
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 2.8e-83 312.8 228 66.2
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 3.7e-83 312.4 292 57.9
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 6.3e-83 311.6 249 63.5
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 6.3e-83 311.6 249 63.5
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 8.3e-83 311.2 268 58.2
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 5.0e-80 302.0 251 61.0
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 4.2e-79 298.9 170 82.4
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 7.7e-73 278.1 193 71.5
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 6.6e-72 275.0 278 56.5
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 1.1e-71 274.2 166 77.7
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 1.8e-69 266.9 287 52.3
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 1.2e-62 244.2 255 47.8
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 6.8e-61 238.4 146 78.8
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 3.7e-59 232.6 208 51.0
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 8.3e-59 231.5 137 80.3
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 3.2e-58 229.6 210 49.5
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 2.5e-55 219.9 257 50.6
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 1.1e-53 214.5 212 46.7
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 3.4e-52 209.5 154 69.5
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 5.1e-48 195.7 214 46.3
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 1.8e-45 187.2 119 74.8
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 6.8e-45 185.3 105 80.0
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 6.6e-40 168.7 129 62.8
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 2.0e-28 130.6 188 34.6
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 2.1e-25 120.6 80 68.8
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 7.8e-25 118.6 137 51.1
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 1.3e-24 117.9 187 36.4
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 1.7e-24 117.5 80 66.2
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 1.6e-22 110.9 81 59.3
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 6.9e-21 105.5 95 56.8
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.5e-20 104.4 118 53.4
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 5.4e-18 95.9 70 60.0
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 9.3e-18 95.1 81 55.6
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 2.2e-11 73.9 47 72.3
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 4.9e-11 72.8 43 83.7
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 6.0e-09 65.9 40 70.0
Lj1A976T72 Lonicera japonica HOM05D005379 ORTHO05D006661 1.5e-07 61.2 83 43.4
CDE02G1103 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 2.5e-07 60.5 48 62.5
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 1.3e-06 58.2 52 48.1
Peaxi162Scf00304g01114 Petunia axillaris HOM05D005379 ORTHO05D006661 2.8e-06 57.0 32 81.2


User provided reference genes

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