Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 1.2e-101 373.2 203 100.0
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 1.1e-86 323.6 206 83.5
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.5e-83 313.2 211 76.8
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 1.5e-83 313.2 201 78.1
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 3.4e-83 312.0 208 78.4
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.7e-82 309.7 210 75.7
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.4e-81 304.7 202 77.2
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.3e-79 300.1 206 79.1
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.6e-77 293.1 208 73.6
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 6.2e-77 291.2 196 79.1
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 2.3e-76 289.3 198 77.3
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 4.0e-76 288.5 209 76.6
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 2.0e-75 286.2 202 76.2
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 3.4e-75 285.4 197 77.2
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 7.5e-75 284.3 201 70.6
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 9.8e-75 283.9 198 76.3
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 9.8e-75 283.9 202 73.3
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 1.7e-74 283.1 199 70.9
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 1.7e-74 283.1 202 70.3
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 4.9e-74 281.6 198 70.2
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 6.4e-74 281.2 198 72.2
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 8.3e-74 280.8 205 70.7
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 1.4e-73 280.0 202 69.8
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 1.9e-73 279.6 203 70.0
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 3.2e-73 278.9 202 69.8
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 3.2e-73 278.9 206 71.8
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 3.2e-73 278.9 198 69.7
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 3.2e-73 278.9 207 72.5
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 4.1e-73 278.5 209 75.1
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 7.1e-73 277.7 199 72.9
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 7.1e-73 277.7 202 71.3
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 3.5e-72 275.4 205 75.6
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 4.6e-72 275.0 205 71.7
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 6.0e-72 274.6 198 70.2
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 7.8e-72 274.2 192 75.5
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 7.8e-72 274.2 192 69.8
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 7.8e-72 274.2 205 71.2
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 3.9e-71 271.9 206 77.7
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 3.9e-71 271.9 204 77.9
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 5.1e-71 271.6 204 71.1
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 5.1e-71 271.6 207 69.1
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 6.6e-71 271.2 198 70.7
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 6.6e-71 271.2 198 69.2
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 8.6e-71 270.8 205 75.6
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 1.5e-70 270.0 201 68.7
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 1.5e-70 270.0 205 73.7
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 1.5e-70 270.0 198 74.2
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 1.9e-70 269.6 202 69.3
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 1.9e-70 269.6 201 70.1
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 1.9e-70 269.6 204 71.1
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 5.6e-70 268.1 202 69.3
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 2.1e-69 266.2 204 70.6
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 3.6e-69 265.4 206 70.4
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 4.7e-69 265.0 179 76.0
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 6.2e-69 264.6 201 72.6
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 8.1e-69 264.2 196 71.9
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 1.1e-68 263.8 202 74.8
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 1.4e-68 263.5 201 73.6
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 2.3e-68 262.7 208 64.9
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 3.1e-68 262.3 192 68.8
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 4.0e-68 261.9 202 66.3
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 8.9e-68 260.8 200 70.5
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 8.9e-68 260.8 200 70.5
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 1.2e-67 260.4 201 69.2
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 1.2e-67 260.4 193 73.6
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 1.2e-67 260.4 142 88.0
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.2e-67 260.4 142 88.0
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 4.4e-67 258.5 208 63.0
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 4.4e-67 258.5 213 72.3
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 4.4e-67 258.5 196 66.3
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 7.6e-67 257.7 194 74.2
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 7.6e-67 257.7 199 71.9
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 9.9e-67 257.3 201 72.1
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.3e-66 256.9 200 72.5
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.3e-66 256.9 142 87.3
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 1.7e-66 256.5 200 70.0
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 1.7e-66 256.5 212 70.8
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 2.9e-66 255.8 180 77.8
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 3.7e-66 255.4 201 70.1
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 6.4e-66 254.6 203 70.9
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 1.1e-65 253.8 206 74.8
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.1e-65 253.8 197 71.6
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 1.1e-65 253.8 199 72.4
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.4e-65 253.4 200 72.0
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 1.9e-65 253.1 190 75.8
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 1.9e-65 253.1 212 68.4
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 1.9e-65 253.1 203 72.4
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 2.4e-65 252.7 193 69.4
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.4e-65 251.5 142 85.2
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 2.1e-64 249.6 133 87.2
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 3.5e-64 248.8 192 69.8
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 1.1e-62 243.8 202 65.3
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 1.9e-62 243.0 187 72.2
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 2.5e-62 242.7 179 78.8
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 7.3e-62 241.1 200 70.0
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 7.3e-62 241.1 201 68.7
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.6e-61 240.0 192 65.1
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 1.1e-60 237.3 200 69.0
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 1.1e-60 237.3 197 68.5
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 2.0e-59 233.0 202 66.8
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 2.6e-59 232.6 201 63.7
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 6.4e-58 228.0 206 67.0
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.1e-57 227.3 204 62.7
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 2.1e-56 223.0 191 66.5
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 2.7e-56 222.6 121 82.6
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 2.7e-56 222.6 131 78.6
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 3.5e-56 222.2 195 60.5
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 7.8e-56 221.1 128 80.5
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 3.3e-54 215.7 191 68.1
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 3.3e-54 215.7 138 73.2
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 9.6e-54 214.2 150 76.0
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 2.1e-53 213.0 192 60.9
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 2.0e-51 206.5 201 59.7
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 5.8e-51 204.9 112 83.0
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 2.3e-47 193.0 160 71.9
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 2.5e-46 189.5 107 82.2
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 7.3e-46 188.0 163 62.0
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 2.8e-45 186.0 95 89.5
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 1.5e-43 180.3 88 93.2
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 3.1e-36 156.0 209 49.3
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 2.9e-34 149.4 82 81.7
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 1.0e-31 141.0 125 70.4
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.1e-28 131.0 101 55.4
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 7.6e-27 124.8 121 55.4
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 6.5e-26 121.7 206 47.6
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 2.7e-24 116.3 59 89.8
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 1.3e-23 114.0 93 54.8
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 5.1e-23 112.1 106 50.0
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 1.9e-17 93.6 83 56.6
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.7e-15 85.1 47 80.9
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 3.7e-13 79.3 113 38.1
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.4e-12 77.4 106 50.9
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 5.0e-10 68.9 82 46.3
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.1e-09 67.8 35 82.9
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.6e-08 62.8 84 60.7
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 1.5e-06 57.4 88 40.9


User provided reference genes

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